{"id":"https://openalex.org/W3134631034","doi":"https://doi.org/10.1109/tcsvt.2021.3063145","title":"An Ensemble Framework for Improving the Prediction of Deleterious Synonymous Mutation","display_name":"An Ensemble Framework for Improving the Prediction of Deleterious Synonymous Mutation","publication_year":2021,"publication_date":"2021-03-02","ids":{"openalex":"https://openalex.org/W3134631034","doi":"https://doi.org/10.1109/tcsvt.2021.3063145","mag":"3134631034"},"language":"en","primary_location":{"id":"doi:10.1109/tcsvt.2021.3063145","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcsvt.2021.3063145","pdf_url":null,"source":{"id":"https://openalex.org/S115173108","display_name":"IEEE Transactions on Circuits and Systems for Video Technology","issn_l":"1051-8215","issn":["1051-8215","1558-2205"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Circuits and Systems for Video Technology","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108059952","display_name":"Na Cheng","orcid":"https://orcid.org/0000-0002-5446-0489"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Na Cheng","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institutes of Physical Science and Information Technology, Anhui University, Hefei, China","Key Laboratory of Computational Neuroscience and \\text{Brain-Inspired} Intelligence, Ministry of Education, Fudan University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institutes of Physical Science and Information Technology, Anhui University, Hefei, China","institution_ids":["https://openalex.org/I143868143"]},{"raw_affiliation_string":"Key Laboratory of Computational Neuroscience and \\text{Brain-Inspired} Intelligence, Ministry of Education, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100773078","display_name":"Huadong Wang","orcid":"https://orcid.org/0000-0001-7665-2046"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huadong Wang","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102896373","display_name":"Xi Tang","orcid":"https://orcid.org/0009-0006-7235-5099"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xi Tang","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institutes of Physical Science and Information Technology, Anhui University, Hefei, China","Key Laboratory of Computational Neuroscience and \\text{Brain-Inspired} Intelligence, Ministry of Education, Fudan University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institutes of Physical Science and Information Technology, Anhui University, Hefei, China","institution_ids":["https://openalex.org/I143868143"]},{"raw_affiliation_string":"Key Laboratory of Computational Neuroscience and \\text{Brain-Inspired} Intelligence, Ministry of Education, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100375875","display_name":"Tao Zhang","orcid":"https://orcid.org/0000-0003-0401-2300"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Zhang","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110740283","display_name":"Jie Gui","orcid":"https://orcid.org/0000-0002-9450-1759"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Gui","raw_affiliation_strings":["School of Cyber Science and Engineering, Southeast University, Nanjing, China"],"raw_orcid":"https://orcid.org/0000-0002-9450-1759","affiliations":[{"raw_affiliation_string":"School of Cyber Science and Engineering, Southeast University, Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064185915","display_name":"Chun-Hou Zheng","orcid":"https://orcid.org/0000-0002-2695-1926"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chun-Hou Zheng","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, China"],"raw_orcid":"https://orcid.org/0000-0002-2695-1926","affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5065943710","display_name":"Junfeng Xia","orcid":"https://orcid.org/0000-0003-3024-1705"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]},{"id":"https://openalex.org/I24943067","display_name":"Fudan University","ror":"https://ror.org/013q1eq08","country_code":"CN","type":"education","lineage":["https://openalex.org/I24943067"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junfeng Xia","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institutes of Physical Science and Information Technology, Anhui University, Hefei, China","Key Laboratory of Computational Neuroscience and \\text{Brain-Inspired} Intelligence, Ministry of Education, Fudan University, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0003-3024-1705","affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institutes of Physical Science and Information Technology, Anhui University, Hefei, China","institution_ids":["https://openalex.org/I143868143"]},{"raw_affiliation_string":"Key Laboratory of Computational Neuroscience and \\text{Brain-Inspired} Intelligence, Ministry of Education, Fudan University, Shanghai, China","institution_ids":["https://openalex.org/I24943067"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.5551,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.62666612,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"32","issue":"5","first_page":"2603","last_page":"2611"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6942249536514282},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6900418400764465},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.689141571521759},{"id":"https://openalex.org/keywords/ensemble-learning","display_name":"Ensemble learning","score":0.5607953071594238},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.5086275339126587},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.4923022985458374},{"id":"https://openalex.org/keywords/predictive-modelling","display_name":"Predictive modelling","score":0.45509880781173706},{"id":"https://openalex.org/keywords/ensemble-forecasting","display_name":"Ensemble forecasting","score":0.4388331174850464},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.4207283556461334},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32305967807769775}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6942249536514282},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6900418400764465},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.689141571521759},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.5607953071594238},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.5086275339126587},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.4923022985458374},{"id":"https://openalex.org/C45804977","wikidata":"https://www.wikidata.org/wiki/Q7239673","display_name":"Predictive modelling","level":2,"score":0.45509880781173706},{"id":"https://openalex.org/C119898033","wikidata":"https://www.wikidata.org/wiki/Q3433888","display_name":"Ensemble forecasting","level":2,"score":0.4388331174850464},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.4207283556461334},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32305967807769775},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tcsvt.2021.3063145","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcsvt.2021.3063145","pdf_url":null,"source":{"id":"https://openalex.org/S115173108","display_name":"IEEE Transactions on Circuits and Systems for Video Technology","issn_l":"1051-8215","issn":["1051-8215","1558-2205"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Circuits and Systems for Video Technology","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.5400000214576721,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G2483327137","display_name":"\u8f7d\u80fd\u7c92\u5b50\u5bf9\u5173\u952e\u751f\u7269\u9776\u7684\u5206\u5b50\u8c03\u63a7\u673a\u5236\u4e0e\u5e94\u7528\u57fa\u7840\u7814\u7a76","funder_award_id":"11835014","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5573161910","display_name":null,"funder_award_id":"61672037","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1814997765","https://openalex.org/W1957275269","https://openalex.org/W2002999243","https://openalex.org/W2011582941","https://openalex.org/W2018189081","https://openalex.org/W2022651039","https://openalex.org/W2038473742","https://openalex.org/W2052262960","https://openalex.org/W2077596705","https://openalex.org/W2088338354","https://openalex.org/W2097606916","https://openalex.org/W2103145565","https://openalex.org/W2107804881","https://openalex.org/W2132312350","https://openalex.org/W2135993011","https://openalex.org/W2145191876","https://openalex.org/W2145203699","https://openalex.org/W2146528527","https://openalex.org/W2148105023","https://openalex.org/W2167852161","https://openalex.org/W2174602966","https://openalex.org/W2331972180","https://openalex.org/W2417483443","https://openalex.org/W2521967673","https://openalex.org/W2604078450","https://openalex.org/W2605196967","https://openalex.org/W2612969216","https://openalex.org/W2742600815","https://openalex.org/W2751686252","https://openalex.org/W2893431377","https://openalex.org/W2905452503","https://openalex.org/W2911855146","https://openalex.org/W2911982216","https://openalex.org/W2913961829","https://openalex.org/W2948505931","https://openalex.org/W2952445740","https://openalex.org/W2957962367","https://openalex.org/W3038114454"],"related_works":["https://openalex.org/W4285741730","https://openalex.org/W4281560664","https://openalex.org/W4281703890","https://openalex.org/W3042934217","https://openalex.org/W3202701980","https://openalex.org/W3136979370","https://openalex.org/W4224047587","https://openalex.org/W3038539283","https://openalex.org/W3175454233","https://openalex.org/W3096310447"],"abstract_inverted_index":{"In":[0,52],"recent":[1],"years,":[2,42],"the":[3,27,40,43,69,119,131,141,159,189],"association":[4],"between":[5],"synonymous":[6],"mutations":[7],"(SMs)":[8],"and":[9,84,87,118,161],"human":[10],"diseases":[11],"has":[12],"been":[13],"uncovered":[14],"in":[15,26,39,102],"many":[16],"studies.":[17],"It":[18],"is":[19,49,63],"a":[20,57,174],"challenge":[21],"for":[22,97,177],"identifying":[23],"deleterious":[24,47,178],"SMs":[25,48],"field":[28],"of":[29,46,99,122,135],"medical":[30],"genomics.":[31],"Although":[32],"there":[33],"are":[34,193],"several":[35],"computational":[36],"methods":[37],"proposed":[38,56],"past":[41],"precise":[44],"prediction":[45,116],"still":[50],"challenging.":[51],"this":[53],"work,":[54],"we":[55,88],"predictor":[58,170],"named":[59],"as":[60,130],"EnDSM,":[61],"which":[62],"an":[64],"accurate":[65],"method":[66],"based":[67],"on":[68,158],"ensemble":[70,142,169],"framework.":[71],"We":[72,107,165],"explored":[73],"multimodal":[74],"features":[75],"across":[76],"four":[77,110],"groups":[78],"including":[79],"functional":[80],"score,":[81],"conservation,":[82],"splicing,":[83],"sequence":[85],"features,":[86],"then":[89],"trained":[90],"eight":[91],"conceptually":[92],"different":[93],"machine":[94],"learning":[95,143],"classifiers":[96],"each":[98],"them,":[100],"resulting":[101],"32":[103],"base":[104,111,124],"classification":[105,125],"models.":[106],"further":[108],"selected":[109],"models":[112,126],"referring":[113],"to":[114,139],"their":[115],"performance":[117,152],"predictive":[120],"probabilities":[121],"these":[123],"were":[127],"subsequently":[128],"used":[129],"input":[132],"feature":[133],"vectors":[134],"logistic":[136],"regression":[137],"classifier":[138],"construct":[140],"model.":[144],"The":[145],"results":[146],"suggested":[147],"that":[148,167],"EnDSM":[149,171,184],"achieved":[150],"better":[151],"comparing":[153],"with":[154,188],"other":[155],"state-of-the-art":[156],"predictors":[157],"training":[160],"independent":[162],"test":[163],"datasets.":[164],"anticipate":[166],"our":[168],"will":[172],"become":[173],"valuable":[175],"tool":[176],"SM":[179],"prediction.":[180],"<bold":[181],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[182],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">The":[183],"server":[185],"interface":[186],"along":[187],"benchmarking":[190],"data":[191],"sets":[192],"freely":[194],"available":[195],"at":[196],"<uri>http://bioinfo.ahu.edu.cn/EnDSM</uri>.</b>":[197]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
