{"id":"https://openalex.org/W4391248454","doi":"https://doi.org/10.1109/tcsi.2024.3351966","title":"In-Memory Acceleration of Hyperdimensional Genome Matching on Unreliable Emerging Technologies","display_name":"In-Memory Acceleration of Hyperdimensional Genome Matching on Unreliable Emerging Technologies","publication_year":2024,"publication_date":"2024-01-26","ids":{"openalex":"https://openalex.org/W4391248454","doi":"https://doi.org/10.1109/tcsi.2024.3351966"},"language":"en","primary_location":{"id":"doi:10.1109/tcsi.2024.3351966","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcsi.2024.3351966","pdf_url":null,"source":{"id":"https://openalex.org/S116977442","display_name":"IEEE Transactions on Circuits and Systems I Regular Papers","issn_l":"1549-8328","issn":["1549-8328","1558-0806"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Circuits and Systems I: Regular Papers","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023141859","display_name":"Hamza Errahmouni Barkam","orcid":"https://orcid.org/0000-0002-0500-4647"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hamza E. Barkam","raw_affiliation_strings":["Bio-Inspired Architecture and Systems Laboratory (BIASLab), UC Irvine, Irvine, CA, USA"],"raw_orcid":"https://orcid.org/0000-0002-0500-4647","affiliations":[{"raw_affiliation_string":"Bio-Inspired Architecture and Systems Laboratory (BIASLab), UC Irvine, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006363230","display_name":"Sanggeon Yun","orcid":"https://orcid.org/0000-0002-0488-9666"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sanggeon Yun","raw_affiliation_strings":["Bio-Inspired Architecture and Systems Laboratory (BIASLab), UC Irvine, Irvine, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bio-Inspired Architecture and Systems Laboratory (BIASLab), UC Irvine, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064095385","display_name":"Paul R. Gen\u00dfler","orcid":"https://orcid.org/0000-0002-7175-7284"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Paul R. Genssler","raw_affiliation_strings":["Chair of Semiconductor Test and Reliability (STAR), University of Stuttgart, Stuttgart, Germany"],"raw_orcid":"https://orcid.org/0000-0002-7175-7284","affiliations":[{"raw_affiliation_string":"Chair of Semiconductor Test and Reliability (STAR), University of Stuttgart, Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078948242","display_name":"Che-Kai Liu","orcid":"https://orcid.org/0009-0003-9604-3987"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Che-Kai Liu","raw_affiliation_strings":["Integrated Circuits and Systems Research Laboratory (ICSRL), Georgia Institute of Technology, Atlanta, GA, USA"],"raw_orcid":"https://orcid.org/0009-0003-9604-3987","affiliations":[{"raw_affiliation_string":"Integrated Circuits and Systems Research Laboratory (ICSRL), Georgia Institute of Technology, Atlanta, GA, USA","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035947458","display_name":"Zhuowen Zou","orcid":"https://orcid.org/0000-0001-9057-8815"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhuowen Zou","raw_affiliation_strings":["Bio-Inspired Architecture and Systems Laboratory (BIASLab), UC Irvine, Irvine, CA, USA"],"raw_orcid":"https://orcid.org/0000-0001-9057-8815","affiliations":[{"raw_affiliation_string":"Bio-Inspired Architecture and Systems Laboratory (BIASLab), UC Irvine, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059133190","display_name":"Hussam Amrouch","orcid":"https://orcid.org/0000-0002-5649-3102"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hussam Amrouch","raw_affiliation_strings":["Chair of Semiconductor Test and Reliability (STAR), University of Stuttgart, Stuttgart, Germany"],"raw_orcid":"https://orcid.org/0000-0002-5649-3102","affiliations":[{"raw_affiliation_string":"Chair of Semiconductor Test and Reliability (STAR), University of Stuttgart, Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033221192","display_name":"Mohsen Imani","orcid":"https://orcid.org/0000-0002-5761-0622"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohsen Imani","raw_affiliation_strings":["Bio-Inspired Architecture and Systems Laboratory (BIASLab), UC Irvine, Irvine, CA, USA"],"raw_orcid":"https://orcid.org/0000-0002-5761-0622","affiliations":[{"raw_affiliation_string":"Bio-Inspired Architecture and Systems Laboratory (BIASLab), UC Irvine, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.7425,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.68614921,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"71","issue":"4","first_page":"1794","last_page":"1807"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12808","display_name":"Ferroelectric and Negative Capacitance Devices","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12808","display_name":"Ferroelectric and Negative Capacitance Devices","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10502","display_name":"Advanced Memory and Neural Computing","score":0.9847999811172485,"subfield":{"id":"https://openalex.org/subfields/2208","display_name":"Electrical and Electronic Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10107","display_name":"Ferroelectric and Piezoelectric Materials","score":0.90420001745224,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6518690586090088},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.45223069190979004},{"id":"https://openalex.org/keywords/computer-engineering","display_name":"Computer engineering","score":0.4470064640045166},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.4192411005496979},{"id":"https://openalex.org/keywords/curse-of-dimensionality","display_name":"Curse of dimensionality","score":0.41473865509033203},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.39218929409980774},{"id":"https://openalex.org/keywords/electronic-engineering","display_name":"Electronic engineering","score":0.3471306562423706},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.321768581867218},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1660686731338501}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6518690586090088},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.45223069190979004},{"id":"https://openalex.org/C113775141","wikidata":"https://www.wikidata.org/wiki/Q428691","display_name":"Computer engineering","level":1,"score":0.4470064640045166},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.4192411005496979},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.41473865509033203},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.39218929409980774},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.3471306562423706},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.321768581867218},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1660686731338501},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tcsi.2024.3351966","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcsi.2024.3351966","pdf_url":null,"source":{"id":"https://openalex.org/S116977442","display_name":"IEEE Transactions on Circuits and Systems I Regular Papers","issn_l":"1549-8328","issn":["1549-8328","1558-0806"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Circuits and Systems I: Regular Papers","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.47999998927116394}],"awards":[{"id":"https://openalex.org/G1036738569","display_name":null,"funder_award_id":"2319198","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4560043218","display_name":null,"funder_award_id":"2321840","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5902605455","display_name":null,"funder_award_id":"2312517","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7363961228","display_name":null,"funder_award_id":"FA9550-22-1-0253","funder_id":"https://openalex.org/F4320338279","funder_display_name":"Air Force Office of Scientific Research"},{"id":"https://openalex.org/G8134046633","display_name":null,"funder_award_id":"N00014-22-1-2067","funder_id":"https://openalex.org/F4320337345","funder_display_name":"Office of Naval Research"},{"id":"https://openalex.org/G8862787963","display_name":null,"funder_award_id":"2127780","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8915565379","display_name":null,"funder_award_id":"N00014-21-1-2225","funder_id":"https://openalex.org/F4320337345","funder_display_name":"Office of Naval Research"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306087","display_name":"Semiconductor Research Corporation","ror":"https://ror.org/047z4n946"},{"id":"https://openalex.org/F4320332180","display_name":"Defense Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"},{"id":"https://openalex.org/F4320337345","display_name":"Office of Naval Research","ror":"https://ror.org/00rk2pe57"},{"id":"https://openalex.org/F4320338279","display_name":"Air Force Office of Scientific Research","ror":"https://ror.org/011e9bt93"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W1679222726","https://openalex.org/W1828154403","https://openalex.org/W1965555277","https://openalex.org/W1995875735","https://openalex.org/W2070862086","https://openalex.org/W2099617207","https://openalex.org/W2139747296","https://openalex.org/W2142228262","https://openalex.org/W2775771159","https://openalex.org/W2789843538","https://openalex.org/W2798654995","https://openalex.org/W2948661249","https://openalex.org/W2963650979","https://openalex.org/W2971433408","https://openalex.org/W2971801673","https://openalex.org/W2979874885","https://openalex.org/W2983032988","https://openalex.org/W2988640543","https://openalex.org/W2990618091","https://openalex.org/W3014426053","https://openalex.org/W3033330790","https://openalex.org/W3036478084","https://openalex.org/W3091803956","https://openalex.org/W3098780461","https://openalex.org/W3100710793","https://openalex.org/W3101272433","https://openalex.org/W3109708494","https://openalex.org/W3128687311","https://openalex.org/W3137500779","https://openalex.org/W3138860252","https://openalex.org/W3139113149","https://openalex.org/W3200367387","https://openalex.org/W3212965658","https://openalex.org/W4205807416","https://openalex.org/W4220702691","https://openalex.org/W4226199505","https://openalex.org/W4254197176","https://openalex.org/W4281961012","https://openalex.org/W4285206141","https://openalex.org/W4286571845","https://openalex.org/W4288064472","https://openalex.org/W4308885556","https://openalex.org/W4321608116","https://openalex.org/W4362700144","https://openalex.org/W4379115890","https://openalex.org/W4382355958","https://openalex.org/W6787002506","https://openalex.org/W6840010877"],"related_works":["https://openalex.org/W4296209631","https://openalex.org/W2561617217","https://openalex.org/W4294811468","https://openalex.org/W2355801475","https://openalex.org/W4206659427","https://openalex.org/W2170062176","https://openalex.org/W2148135840","https://openalex.org/W106004901","https://openalex.org/W2154044472","https://openalex.org/W4210772589"],"abstract_inverted_index":{"Novel":[0],"computer":[1],"architectures":[2],"like":[3],"Compute-in-Memory":[4],"(CiM)":[5],"merge":[6],"the":[7,13,34,57,71,108,136,143,153,212,218,225],"memory":[8],"and":[9,38,66,84,139,177,188,198],"processing":[10],"units,":[11],"mimicking":[12],"human":[14],"brain.":[15],"Simultaneously,":[16],"Hyperdimensional":[17],"Computing":[18],"(HDC)":[19],"is":[20,54,75,107],"emerging":[21,59],"as":[22],"a":[23,114,167,178,182],"brain-inspired":[24],"machine":[25],"learning":[26,161],"(ML)":[27],"approach.":[28],"Both":[29],"developments":[30],"hold":[31],"promise":[32],"for":[33,41,119,175,186],"realm":[35],"of":[36,56,73,146],"AI":[37],"computing,":[39],"especially":[40],"genome-matching":[42,97],"tasks,":[43],"where":[44],"large":[45],"data":[46],"movements":[47],"overwhelm":[48],"traditional":[49,95],"von":[50],"Neumann":[51],"architectures.":[52,69],"FeFET":[53,126,134],"one":[55,110],"up-and-coming":[58],"technologies":[60],"that":[61,94,193],"promises":[62],"to":[63,111,122,135,151],"enable":[64],"ultra-efficient":[65],"compact":[67],"CiM":[68],"However,":[70],"adoption":[72],"FeFETs":[74,90],"hindered":[76],"by":[77,181,221],"their":[78],"10":[79],"nm-thick":[80],"Ferroelectric":[81],"(FE)":[82],"layer":[83],"process":[85],"variation.":[86],"Thus,":[87],"calculations":[88],"with":[89],"have":[91],"errors":[92],"(noise)":[93],"ML":[96],"models":[98],"cannot":[99],"tolerate.":[100],"To":[101],"overcome":[102],"these":[103],"challenges,":[104],"this":[105],"work":[106],"first":[109],"i)":[112],"present":[113],"reliable":[115],"HDC":[116,137,147,160,170],"framework":[117,162],"(HDGIM)":[118],"highly-scaled":[120,194],"(down":[121],"merely":[123],"3nm),":[124],"multi-bit":[125],"technology,":[127],"ii)":[128],"introduce":[129],"temperature-thickness":[130],"modeled":[131,204],"noise":[132,205,213],"from":[133],"system,":[138],"iii)":[140],"extensively":[141],"define":[142],"memorization":[144],"capacity":[145],"hyperparameters":[148],"in":[149],"order":[150],"evaluate":[152],"performance":[154],"before":[155],"deployment":[156],"theoretically.":[157],"Our":[158,190],"novel":[159,183],"iteratively":[163],"uses":[164],"two":[165],"models:":[166],"full-precision":[168],"32-bit":[169],"model,":[171],"an":[172],"ideal":[173],"model":[174,215],"training,":[176],"reduced":[179],"bit-precision":[180],"quantization":[184],"method":[185],"validation":[187],"inference.":[189,210],"results":[191],"demonstrate":[192],"FeFET,":[195],"realizing":[196],"3-bit":[197],"even":[199],"4-bit,":[200],"can":[201],"withstand":[202],"any":[203],"given":[206],"high":[207],"dimensionality":[208],"during":[209,214],"Considering":[211],"adjustment":[216],"improves":[217],"inherent":[219],"robustness":[220],"almost":[222],"9%":[223],"on":[224],"4-bit":[226],"case.":[227]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}