{"id":"https://openalex.org/W4402259332","doi":"https://doi.org/10.1109/tcomm.2024.3455235","title":"Efficient Explicit and Pseudo-Random Constructions of Constrained Codes for DNA Storage","display_name":"Efficient Explicit and Pseudo-Random Constructions of Constrained Codes for DNA Storage","publication_year":2024,"publication_date":"2024-09-05","ids":{"openalex":"https://openalex.org/W4402259332","doi":"https://doi.org/10.1109/tcomm.2024.3455235"},"language":"en","primary_location":{"id":"doi:10.1109/tcomm.2024.3455235","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcomm.2024.3455235","pdf_url":null,"source":{"id":"https://openalex.org/S196647941","display_name":"IEEE Transactions on Communications","issn_l":"0090-6778","issn":["0090-6778","1558-0857"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310316002","host_organization_name":"IEEE Communications Society","host_organization_lineage":["https://openalex.org/P4310316002","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Communications Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Communications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062225577","display_name":"Xuan He","orcid":"https://orcid.org/0000-0002-8934-1981"},"institutions":[{"id":"https://openalex.org/I4800084","display_name":"Southwest Jiaotong University","ror":"https://ror.org/00hn7w693","country_code":"CN","type":"education","lineage":["https://openalex.org/I4800084"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuan He","raw_affiliation_strings":["Information Coding and Transmission Key Laboratory of Sichuan Province, Southwest Jiaotong University, Chengdu, China","Information Coding and Transmission Key Lab of Sichuan Province, Southwest Jiaotong University, China"],"raw_orcid":"https://orcid.org/0000-0002-8934-1981","affiliations":[{"raw_affiliation_string":"Information Coding and Transmission Key Laboratory of Sichuan Province, Southwest Jiaotong University, Chengdu, China","institution_ids":["https://openalex.org/I4800084"]},{"raw_affiliation_string":"Information Coding and Transmission Key Lab of Sichuan Province, Southwest Jiaotong University, China","institution_ids":["https://openalex.org/I4800084"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101888050","display_name":"Yajuan Liu","orcid":"https://orcid.org/0000-0003-1799-0760"},"institutions":[{"id":"https://openalex.org/I4800084","display_name":"Southwest Jiaotong University","ror":"https://ror.org/00hn7w693","country_code":"CN","type":"education","lineage":["https://openalex.org/I4800084"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yajuan Liu","raw_affiliation_strings":["Information Coding and Transmission Key Laboratory of Sichuan Province, Southwest Jiaotong University, Chengdu, China","Information Coding and Transmission Key Lab of Sichuan Province, Southwest Jiaotong University, China"],"raw_orcid":"https://orcid.org/0000-0003-1799-0760","affiliations":[{"raw_affiliation_string":"Information Coding and Transmission Key Laboratory of Sichuan Province, Southwest Jiaotong University, Chengdu, China","institution_ids":["https://openalex.org/I4800084"]},{"raw_affiliation_string":"Information Coding and Transmission Key Lab of Sichuan Province, Southwest Jiaotong University, China","institution_ids":["https://openalex.org/I4800084"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061239630","display_name":"Tong Wang","orcid":"https://orcid.org/0000-0002-7252-1695"},"institutions":[{"id":"https://openalex.org/I4800084","display_name":"Southwest Jiaotong University","ror":"https://ror.org/00hn7w693","country_code":"CN","type":"education","lineage":["https://openalex.org/I4800084"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tong Wang","raw_affiliation_strings":["Information Coding and Transmission Key Laboratory of Sichuan Province, Southwest Jiaotong University, Chengdu, China","Information Coding and Transmission Key Lab of Sichuan Province, Southwest Jiaotong University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information Coding and Transmission Key Laboratory of Sichuan Province, Southwest Jiaotong University, Chengdu, China","institution_ids":["https://openalex.org/I4800084"]},{"raw_affiliation_string":"Information Coding and Transmission Key Lab of Sichuan Province, Southwest Jiaotong University, China","institution_ids":["https://openalex.org/I4800084"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029840191","display_name":"Xiaohu Tang","orcid":"https://orcid.org/0000-0002-7938-7812"},"institutions":[{"id":"https://openalex.org/I4800084","display_name":"Southwest Jiaotong University","ror":"https://ror.org/00hn7w693","country_code":"CN","type":"education","lineage":["https://openalex.org/I4800084"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaohu Tang","raw_affiliation_strings":["Information Coding and Transmission Key Laboratory of Sichuan Province, Southwest Jiaotong University, Chengdu, China","Information Coding and Transmission Key Lab of Sichuan Province, Southwest Jiaotong University, China"],"raw_orcid":"https://orcid.org/0000-0002-7938-7812","affiliations":[{"raw_affiliation_string":"Information Coding and Transmission Key Laboratory of Sichuan Province, Southwest Jiaotong University, Chengdu, China","institution_ids":["https://openalex.org/I4800084"]},{"raw_affiliation_string":"Information Coding and Transmission Key Lab of Sichuan Province, Southwest Jiaotong University, China","institution_ids":["https://openalex.org/I4800084"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4800084"],"apc_list":null,"apc_paid":null,"fwci":0.7465,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.70287136,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"73","issue":"3","first_page":"1431","last_page":"1443"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5369337201118469},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.39091718196868896},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3879110813140869},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.32013222575187683}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5369337201118469},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.39091718196868896},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3879110813140869},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.32013222575187683}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tcomm.2024.3455235","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcomm.2024.3455235","pdf_url":null,"source":{"id":"https://openalex.org/S196647941","display_name":"IEEE Transactions on Communications","issn_l":"0090-6778","issn":["0090-6778","1558-0857"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310316002","host_organization_name":"IEEE Communications Society","host_organization_lineage":["https://openalex.org/P4310316002","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Communications Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Communications","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8754238840","display_name":null,"funder_award_id":"62101462","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8802715856","display_name":null,"funder_award_id":"2682023CG001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1971584645","https://openalex.org/W2025383314","https://openalex.org/W2028955838","https://openalex.org/W2034323860","https://openalex.org/W2043854093","https://openalex.org/W2114487425","https://openalex.org/W2124595411","https://openalex.org/W2125636047","https://openalex.org/W2148575324","https://openalex.org/W2162980030","https://openalex.org/W2471091339","https://openalex.org/W2592122940","https://openalex.org/W2896926252","https://openalex.org/W3010362682","https://openalex.org/W3010932251","https://openalex.org/W3015264171","https://openalex.org/W3080116245","https://openalex.org/W3118614175","https://openalex.org/W3184008446","https://openalex.org/W3197408514","https://openalex.org/W4226211215","https://openalex.org/W4244625299","https://openalex.org/W4289655154","https://openalex.org/W4289655317","https://openalex.org/W4289655389","https://openalex.org/W4388717405","https://openalex.org/W6636915900","https://openalex.org/W6646041076","https://openalex.org/W6702670155","https://openalex.org/W6749051496","https://openalex.org/W6792794548"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"GC-content":[0,20,59,124],"and":[1,57,68,88,122,138,192,222,238],"homopolymers":[2,23],"are":[3,24],"two":[4],"constraints":[5],"widely":[6],"considered":[7],"in":[8],"DNA":[9,15,35],"storage.":[10],"Extensive":[11],"experiments":[12],"show":[13],"that":[14],"strings":[16],"with":[17,201],"too":[18],"high/low":[19],"and/or":[21],"long":[22],"more":[25],"likely":[26],"to":[27],"suffer":[28],"from":[29],"errors.":[30],"We":[31,233],"say":[32,100],"a":[33,84,97,169,240,247],"length-n":[34],"string":[36],"satisfies":[37,102],"the":[38,103,123,177,182,236],"<inline-formula":[39,50,62,69,76,89,104,115,131,139,148,161,184,193,214,223],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[40,51,63,70,77,90,105,116,132,140,149,162,185,194,215,224],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">":[41,52,64,71,78,91,106,117,133,141,150,163,186,195,216,225],"<tex-math":[42,53,65,72,79,92,107,118,134,142,151,164,187,196,217,226],"notation=\"LaTeX\">$(\\epsilon":[43,188,218,227],",\\ell)$":[44,109,189,198,219,228],"</tex-math></inline-formula>-constraints":[45],"if":[46,111],"no":[47,112],"homopolymer":[48,113],"exceeds":[49,114],"notation=\"LaTeX\">$\\ell":[54,93,119],"$":[55,81,94,120,136,144,166],"</tex-math></inline-formula>":[56,67,82,95,121,137,145,167],"its":[58,126],"falls":[60,129],"between":[61,130],"notation=\"LaTeX\">$(0.5-\\epsilon)n$":[66],"notation=\"LaTeX\">$(0.5+\\epsilon)n$":[73],"</tex-math></inline-formula>,":[74,159],"where":[75,160],"notation=\"LaTeX\">$\\epsilon":[80],"is":[83,96,168],"positive":[85,98,170],"real":[86],"number":[87],"integer;":[99],"it":[101],"notation=\"LaTeX\">$(\\delta":[108,197],"</tex-math></inline-formula>-prefix-constraints":[110],"of":[125,212,243,250],"length-i":[127],"prefix":[128],"notation=\"LaTeX\">$i/2-\\delta":[135],"notation=\"LaTeX\">$i/2+\\delta":[143],"for":[146,181,246],"any":[147],"notation=\"LaTeX\">$i":[152],"\\in":[153],"\\{1,":[154],"2,":[155],"\\ldots":[156],",":[157],"n\\}$":[158],"notation=\"LaTeX\">$\\delta":[165],"integer.":[171],"In":[172],"this":[173],"paper,":[174],"we":[175,206],"realize":[176],"first":[178],"enumerative":[179],"coding":[180],"capacity-achieving":[183],"</tex-math></inline-formula>-constrained":[190,220,229],"codes":[191,200,221],"</tex-math></inline-formula>-prefix-constrained":[199],"polynomial":[202],"encoding/decoding":[203],"complexity.":[204],"Meanwhile,":[205],"propose":[207],"an":[208],"efficient":[209],"pseudo-random":[210,244],"construction":[211,245],"capacity-approaching":[213],"error":[230],"correction":[231],"codes.":[232,251],"further":[234],"generalize":[235],"idea":[237],"establish":[239],"systematic":[241],"framework":[242],"wide":[248],"range":[249]},"counts_by_year":[{"year":2025,"cited_by_count":4}],"updated_date":"2025-12-21T23:12:01.093139","created_date":"2025-10-10T00:00:00"}
