{"id":"https://openalex.org/W4388505167","doi":"https://doi.org/10.1109/tcomm.2023.3330848","title":"Sequence Design and Reconstruction Under the Repeat Channel in Enzymatic DNA Synthesis","display_name":"Sequence Design and Reconstruction Under the Repeat Channel in Enzymatic DNA Synthesis","publication_year":2023,"publication_date":"2023-11-08","ids":{"openalex":"https://openalex.org/W4388505167","doi":"https://doi.org/10.1109/tcomm.2023.3330848"},"language":"en","primary_location":{"id":"doi:10.1109/tcomm.2023.3330848","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcomm.2023.3330848","pdf_url":null,"source":{"id":"https://openalex.org/S196647941","display_name":"IEEE Transactions on Communications","issn_l":"0090-6778","issn":["0090-6778","1558-0857"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310316002","host_organization_name":"IEEE Communications Society","host_organization_lineage":["https://openalex.org/P4310316002","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Communications Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Communications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057100523","display_name":"Roy Shafir","orcid":null},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Roy Shafir","raw_affiliation_strings":["Computer Science Faculty, Technion&#x2014;Israel Institute of Technology, Haifa, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Faculty, Technion&#x2014;Israel Institute of Technology, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035584245","display_name":"Omer Sabary","orcid":"https://orcid.org/0000-0001-6099-4113"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Omer Sabary","raw_affiliation_strings":["Computer Science Faculty, Technion&#x2014;Israel Institute of Technology, Haifa, Israel"],"raw_orcid":"https://orcid.org/0000-0001-6099-4113","affiliations":[{"raw_affiliation_string":"Computer Science Faculty, Technion&#x2014;Israel Institute of Technology, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042951994","display_name":"Leon Anavy","orcid":"https://orcid.org/0000-0002-6681-7377"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Leon Anavy","raw_affiliation_strings":["Computer Science School, Reichman University, Herzliya, Israel"],"raw_orcid":"https://orcid.org/0000-0002-6681-7377","affiliations":[{"raw_affiliation_string":"Computer Science School, Reichman University, Herzliya, Israel","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021586372","display_name":"Eitan Yaakobi","orcid":"https://orcid.org/0000-0002-9851-5234"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Eitan Yaakobi","raw_affiliation_strings":["Computer Science Faculty, Technion&#x2014;Israel Institute of Technology, Haifa, Israel"],"raw_orcid":"https://orcid.org/0000-0002-9851-5234","affiliations":[{"raw_affiliation_string":"Computer Science Faculty, Technion&#x2014;Israel Institute of Technology, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002511176","display_name":"Zohar Yakhini","orcid":"https://orcid.org/0000-0002-0420-5412"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Zohar Yakhini","raw_affiliation_strings":["Computer Science Faculty, Technion&#x2014;Israel Institute of Technology, Haifa, Israel","Computer Science Faculty at the Technion, Haifa, Israel; Computer Science School, Reichman University, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Faculty, Technion&#x2014;Israel Institute of Technology, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]},{"raw_affiliation_string":"Computer Science Faculty at the Technion, Haifa, Israel; Computer Science School, Reichman University, Israel","institution_ids":["https://openalex.org/I174306211"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5057100523"],"corresponding_institution_ids":["https://openalex.org/I174306211"],"apc_list":null,"apc_paid":null,"fwci":0.4498,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.67776652,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":"72","issue":"2","first_page":"675","last_page":"691"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12162","display_name":"Cellular Automata and Applications","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.6858298778533936},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6741386651992798},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.6330423355102539},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.49086815118789673},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.45945224165916443},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.44904980063438416},{"id":"https://openalex.org/keywords/trace","display_name":"TRACE (psycholinguistics)","score":0.4338008761405945},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.34154409170150757},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13124564290046692}],"concepts":[{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.6858298778533936},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6741386651992798},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.6330423355102539},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.49086815118789673},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.45945224165916443},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.44904980063438416},{"id":"https://openalex.org/C75291252","wikidata":"https://www.wikidata.org/wiki/Q1315756","display_name":"TRACE (psycholinguistics)","level":2,"score":0.4338008761405945},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.34154409170150757},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13124564290046692},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tcomm.2023.3330848","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcomm.2023.3330848","pdf_url":null,"source":{"id":"https://openalex.org/S196647941","display_name":"IEEE Transactions on Communications","issn_l":"0090-6778","issn":["0090-6778","1558-0857"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310316002","host_organization_name":"IEEE Communications Society","host_organization_lineage":["https://openalex.org/P4310316002","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Communications Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Communications","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.8399999737739563,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G5499581795","display_name":null,"funder_award_id":"101045114","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"}],"funders":[{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W1556443961","https://openalex.org/W1946587648","https://openalex.org/W1969151232","https://openalex.org/W2022835995","https://openalex.org/W2025383314","https://openalex.org/W2096408325","https://openalex.org/W2101549738","https://openalex.org/W2110009858","https://openalex.org/W2114487425","https://openalex.org/W2145674897","https://openalex.org/W2154119782","https://openalex.org/W2162980030","https://openalex.org/W2165012485","https://openalex.org/W2170484108","https://openalex.org/W2177790274","https://openalex.org/W2471091339","https://openalex.org/W2570365641","https://openalex.org/W2592122940","https://openalex.org/W2742656286","https://openalex.org/W2788257106","https://openalex.org/W2801822363","https://openalex.org/W2808129035","https://openalex.org/W2887975794","https://openalex.org/W2896046649","https://openalex.org/W2947129118","https://openalex.org/W2951269465","https://openalex.org/W2963712885","https://openalex.org/W2972936807","https://openalex.org/W2975272736","https://openalex.org/W2976050422","https://openalex.org/W2992522882","https://openalex.org/W3015846461","https://openalex.org/W3028579427","https://openalex.org/W3080129822","https://openalex.org/W3081119335","https://openalex.org/W3081211058","https://openalex.org/W3081373082","https://openalex.org/W3105489941","https://openalex.org/W3106529392","https://openalex.org/W3128220280","https://openalex.org/W3164788607","https://openalex.org/W3190296759","https://openalex.org/W3203003904","https://openalex.org/W3215595371","https://openalex.org/W3217549876","https://openalex.org/W4205338875","https://openalex.org/W4210292703","https://openalex.org/W4289655317","https://openalex.org/W4289713190","https://openalex.org/W4307777744","https://openalex.org/W4376274286","https://openalex.org/W4391144496","https://openalex.org/W6656576250"],"related_works":["https://openalex.org/W1667647204","https://openalex.org/W2404647514","https://openalex.org/W4247536566","https://openalex.org/W2018477250","https://openalex.org/W3119814709","https://openalex.org/W4241418540","https://openalex.org/W1508895727","https://openalex.org/W2725786787","https://openalex.org/W4283160672","https://openalex.org/W1875930651"],"abstract_inverted_index":{"Using":[0],"synthetic":[1],"DNA":[2,28],"for":[3,7,71,124],"data":[4,30,117],"storage":[5,31],"and":[6,14,23,42,58,80,86,92,122,138],"physical":[8,40],"information":[9],"encoding":[10],"in":[11,29,60,105,115],"labeling,":[12],"tracing,":[13],"authentication":[15],"applications":[16,32],"is":[17],"becoming":[18],"more":[19],"feasible":[20],"as":[21,37],"synthesis":[22,48],"reading":[24],"technologies":[25,49],"are":[26],"improving.":[27],"has":[33],"several":[34],"advantages":[35],"such":[36],"very":[38],"high":[39],"density":[41],"robustness.":[43],"Some":[44],"of":[45,55,141],"the":[46,61,106,116],"new":[47],"lead":[50],"to":[51,102,111],"repetition":[52,77],"noise,":[53],"consisting":[54],"sticky":[56],"insertions":[57],"deletions":[59],"resulting":[62],"messages.":[63],"In":[64],"this":[65,128],"paper,":[66],"we":[67,130],"address":[68],"reconstruction":[69],"algorithms":[70],"multiple":[72],"trace":[73],"communication":[74],"channels":[75],"with":[76],"(sticky":[78],"insertion":[79],"deletion)":[81],"noise.":[82],"We":[83,96],"prove":[84],"correctness":[85],"analyze":[87,139],"failure":[88,99],"rates,":[89],"both":[90],"analytically":[91],"on":[93],"simulated":[94],"data.":[95],"identify":[97],"a":[98,112],"mechanism":[100],"related":[101],"alternating":[103,132],"stretches":[104],"design":[107],"sequence":[108],"that":[109],"leads":[110],"potential":[113],"bias":[114],"derived":[118],"from":[119],"reads":[120],"(traces)":[121],"used":[123],"reconstruction.":[125],"To":[126],"minimize":[127],"effect":[129],"introduce":[131],"length":[133],"limited":[134],"codes":[135],"(ALL":[136],"codes)":[137],"some":[140],"their":[142],"properties.":[143]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
