{"id":"https://openalex.org/W4405717963","doi":"https://doi.org/10.1109/tci.2024.3519805","title":"Ice-Tide: Implicit Cryo-ET Imaging and Deformation Estimation","display_name":"Ice-Tide: Implicit Cryo-ET Imaging and Deformation Estimation","publication_year":2024,"publication_date":"2024-12-23","ids":{"openalex":"https://openalex.org/W4405717963","doi":"https://doi.org/10.1109/tci.2024.3519805"},"language":"en","primary_location":{"id":"doi:10.1109/tci.2024.3519805","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tci.2024.3519805","pdf_url":null,"source":{"id":"https://openalex.org/S4210233665","display_name":"IEEE Transactions on Computational Imaging","issn_l":"2333-9403","issn":["2333-9403","2573-0436"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022772194","display_name":"Valentin Debarnot","orcid":"https://orcid.org/0000-0002-3985-0024"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Valentin Debarnot","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Basel, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104088329","display_name":"Vinith Kishore","orcid":null},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Vinith Kishore","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Basel, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078147972","display_name":"Ricardo D. Righetto","orcid":"https://orcid.org/0000-0003-4247-4303"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ricardo D. Righetto","raw_affiliation_strings":["Biozentrum, University of Basel, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biozentrum, University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002015062","display_name":"Ivan Dokmani\u0107","orcid":"https://orcid.org/0000-0001-7132-5214"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ivan Dokmani\u0107","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Basel, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5022772194"],"corresponding_institution_ids":["https://openalex.org/I1850255"],"apc_list":null,"apc_paid":null,"fwci":0.4307,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.69573398,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"11","issue":null,"first_page":"24","last_page":"35"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.8629999756813049,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.8629999756813049,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/remote-sensing","display_name":"Remote sensing","score":0.5419550538063049},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.5246227979660034},{"id":"https://openalex.org/keywords/geodesy","display_name":"Geodesy","score":0.5122941732406616},{"id":"https://openalex.org/keywords/deformation","display_name":"Deformation (meteorology)","score":0.47442856431007385},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.45713552832603455},{"id":"https://openalex.org/keywords/radar-imaging","display_name":"Radar imaging","score":0.41343069076538086},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3948773443698883},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3750510811805725},{"id":"https://openalex.org/keywords/oceanography","display_name":"Oceanography","score":0.1729682981967926},{"id":"https://openalex.org/keywords/radar","display_name":"Radar","score":0.13364934921264648}],"concepts":[{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.5419550538063049},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.5246227979660034},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.5122941732406616},{"id":"https://openalex.org/C204366326","wikidata":"https://www.wikidata.org/wiki/Q3027650","display_name":"Deformation (meteorology)","level":2,"score":0.47442856431007385},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.45713552832603455},{"id":"https://openalex.org/C10929652","wikidata":"https://www.wikidata.org/wiki/Q7279985","display_name":"Radar imaging","level":3,"score":0.41343069076538086},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3948773443698883},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3750510811805725},{"id":"https://openalex.org/C111368507","wikidata":"https://www.wikidata.org/wiki/Q43518","display_name":"Oceanography","level":1,"score":0.1729682981967926},{"id":"https://openalex.org/C554190296","wikidata":"https://www.wikidata.org/wiki/Q47528","display_name":"Radar","level":2,"score":0.13364934921264648},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tci.2024.3519805","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tci.2024.3519805","pdf_url":null,"source":{"id":"https://openalex.org/S4210233665","display_name":"IEEE Transactions on Computational Imaging","issn_l":"2333-9403","issn":["2333-9403","2573-0436"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Imaging","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/13","score":0.6499999761581421,"display_name":"Climate action"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W23794965","https://openalex.org/W1483313280","https://openalex.org/W1978288593","https://openalex.org/W1987905625","https://openalex.org/W1995277257","https://openalex.org/W2029101220","https://openalex.org/W2040957249","https://openalex.org/W2092663520","https://openalex.org/W2146583368","https://openalex.org/W2147388225","https://openalex.org/W2148791483","https://openalex.org/W2148941629","https://openalex.org/W2149360962","https://openalex.org/W2157812230","https://openalex.org/W2487704570","https://openalex.org/W2513935955","https://openalex.org/W2587625522","https://openalex.org/W2593511418","https://openalex.org/W2789381240","https://openalex.org/W2791230784","https://openalex.org/W2897492435","https://openalex.org/W2911410560","https://openalex.org/W2940188016","https://openalex.org/W2953320394","https://openalex.org/W2977933365","https://openalex.org/W3162829093","https://openalex.org/W3177586860","https://openalex.org/W3194007893","https://openalex.org/W3213204639","https://openalex.org/W4200150166","https://openalex.org/W4214521665","https://openalex.org/W4214731463","https://openalex.org/W4220882599","https://openalex.org/W4221151978","https://openalex.org/W4229457981","https://openalex.org/W4281703537","https://openalex.org/W4286210024","https://openalex.org/W4307540205","https://openalex.org/W4308886930","https://openalex.org/W4312580483","https://openalex.org/W4323520868","https://openalex.org/W4372349523","https://openalex.org/W4390120166","https://openalex.org/W4390908020","https://openalex.org/W4402748059","https://openalex.org/W6601468767","https://openalex.org/W6746466744","https://openalex.org/W6749271710","https://openalex.org/W6756040250","https://openalex.org/W6771759557","https://openalex.org/W6782136579","https://openalex.org/W6810219531","https://openalex.org/W6848632045","https://openalex.org/W6854503315"],"related_works":["https://openalex.org/W2121524756","https://openalex.org/W782553550","https://openalex.org/W2369139941","https://openalex.org/W1987967678","https://openalex.org/W2633218168","https://openalex.org/W4235897794","https://openalex.org/W2059707233","https://openalex.org/W1983126463","https://openalex.org/W2085738998","https://openalex.org/W2380150387"],"abstract_inverted_index":{"We":[0,84],"introduce":[1],"ICE-TIDE,":[2],"a":[3,16,27],"method":[4],"for":[5,68],"cryogenic":[6],"electron":[7],"tomography":[8],"(cryo-ET)":[9],"that":[10],"simultaneously":[11],"aligns":[12],"observations":[13],"and":[14,54,103],"reconstructs":[15],"high-resolution":[17],"volume.":[18],"The":[19],"alignment":[20],"of":[21,33,44,88,105],"tilt":[22],"series":[23],"in":[24,101],"cryo-ET":[25],"is":[26],"major":[28],"problem":[29],"limiting":[30],"the":[31,45,56,59,80,86,98],"resolution":[32,102],"reconstructions.":[34],"ICE-TIDE":[35,89],"relies":[36],"on":[37,93,119],"an":[38,64],"efficient":[39],"coordinate-based":[40],"implicit":[41,60],"neural":[42],"representation":[43],"volume":[46],"which":[47],"enables":[48],"it":[49],"to":[50,90,117],"directly":[51],"parameterize":[52],"deformations":[53,107],"align":[55],"projections.":[57],"Furthermore,":[58],"network":[61],"acts":[62],"as":[63,75,77],"effective":[65],"regularizer,":[66],"allowing":[67],"high-quality":[69],"reconstruction":[70],"at":[71],"low":[72],"signal-to-noise":[73],"ratios":[74],"well":[76],"partially":[78],"restoring":[79],"missing":[81],"wedge":[82],"information.":[83],"compare":[85],"performance":[87],"existing":[91],"approaches":[92],"realistic":[94],"simulated":[95],"volumes":[96],"where":[97],"significant":[99],"gains":[100],"accuracy":[104],"recovering":[106],"can":[108],"be":[109],"precisely":[110],"evaluated.":[111],"Finally,":[112],"we":[113],"demonstrate":[114],"ICE-TIDE's":[115],"ability":[116],"perform":[118],"experimental":[120],"data":[121],"sets.":[122]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2025-12-21T23:12:01.093139","created_date":"2025-10-10T00:00:00"}
