{"id":"https://openalex.org/W7154694884","doi":"https://doi.org/10.1109/tcbbio.2026.3685197","title":"Compression and <i>k</i> -Mer Based Approach for Anticancer Peptide Analysis","display_name":"Compression and <i>k</i> -Mer Based Approach for Anticancer Peptide Analysis","publication_year":2026,"publication_date":"2026-04-17","ids":{"openalex":"https://openalex.org/W7154694884","doi":"https://doi.org/10.1109/tcbbio.2026.3685197"},"language":null,"primary_location":{"id":"doi:10.1109/tcbbio.2026.3685197","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2026.3685197","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064858842","display_name":"Sarwan Ali","orcid":"https://orcid.org/0000-0001-8121-2168"},"institutions":[{"id":"https://openalex.org/I2799503643","display_name":"Columbia University Irving Medical Center","ror":"https://ror.org/01esghr10","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799503643"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sarwan Ali","raw_affiliation_strings":["Columbia University Irving Medical Center, New York, NY, USA"],"raw_orcid":"https://orcid.org/0000-0001-8121-2168","affiliations":[{"raw_affiliation_string":"Columbia University Irving Medical Center, New York, NY, USA","institution_ids":["https://openalex.org/I2799503643"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026459918","display_name":"Tamkanat E. Ali","orcid":"https://orcid.org/0009-0006-7744-4488"},"institutions":[{"id":"https://openalex.org/I207789805","display_name":"Lahore University of Management Sciences","ror":"https://ror.org/05b5x4a35","country_code":"PK","type":"education","lineage":["https://openalex.org/I207789805"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Tamkanat E Ali","raw_affiliation_strings":["Lahore University of Management Sciences, Lahore, Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lahore University of Management Sciences, Lahore, Pakistan","institution_ids":["https://openalex.org/I207789805"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017366862","display_name":"Prakash Chourasia","orcid":"https://orcid.org/0000-0002-1443-2192"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Prakash Chourasia","raw_affiliation_strings":["Georgia State University, Atlanta, GA, USA"],"raw_orcid":"https://orcid.org/0000-0002-1443-2192","affiliations":[{"raw_affiliation_string":"Georgia State University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5133903617","display_name":"Murray Patterson","orcid":null},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Murray Patterson","raw_affiliation_strings":["Georgia State University, Atlanta, GA, USA"],"raw_orcid":"https://orcid.org/0000-0002-4329-0234","affiliations":[{"raw_affiliation_string":"Georgia State University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I181565077"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.35368957,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"23","issue":"3","first_page":"1382","last_page":"1392"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.3125,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.3125,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.2401999980211258,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11532","display_name":"Chemokine receptors and signaling","score":0.0210999995470047,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/compression","display_name":"Compression (physics)","score":0.5005000233650208},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.4970000088214874},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.2685999870300293},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.24729999899864197},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.2433999925851822}],"concepts":[{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5062999725341797},{"id":"https://openalex.org/C180016635","wikidata":"https://www.wikidata.org/wiki/Q2712821","display_name":"Compression (physics)","level":2,"score":0.5005000233650208},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.4970000088214874},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3774000108242035},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.30239999294281006},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.2685999870300293},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.25459998846054077},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.24729999899864197},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.2433999925851822},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.23829999566078186}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tcbbio.2026.3685197","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2026.3685197","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.5677907466888428}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W2013226864","https://openalex.org/W2071782155","https://openalex.org/W2074196504","https://openalex.org/W2128859735","https://openalex.org/W2340970647","https://openalex.org/W2515836512","https://openalex.org/W2770645414","https://openalex.org/W2793168264","https://openalex.org/W2924107965","https://openalex.org/W2934422573","https://openalex.org/W2943935116","https://openalex.org/W2964338186","https://openalex.org/W2995514860","https://openalex.org/W3041538267","https://openalex.org/W3044216590","https://openalex.org/W3087224093","https://openalex.org/W3092406486","https://openalex.org/W3096216799","https://openalex.org/W3127712659","https://openalex.org/W3128646645","https://openalex.org/W3128972055","https://openalex.org/W3144379435","https://openalex.org/W3176873949","https://openalex.org/W4205773061","https://openalex.org/W4220693339","https://openalex.org/W4225983992","https://openalex.org/W4284973298","https://openalex.org/W4295759516","https://openalex.org/W4308060269","https://openalex.org/W4317726960","https://openalex.org/W4321380857","https://openalex.org/W4362657509","https://openalex.org/W4385571422","https://openalex.org/W4386850357","https://openalex.org/W4387425124","https://openalex.org/W4387490283","https://openalex.org/W4391113029","https://openalex.org/W4400079495","https://openalex.org/W4401732620"],"related_works":[],"abstract_inverted_index":{"Anti-cancer":[0],"peptide":[1],"(ACP)":[2],"sequence":[3],"classification":[4],"is":[5],"crucial":[6],"for":[7,38],"cancer":[8,87],"treatment":[9],"development.":[10],"Current":[11],"neural":[12,92],"network":[13],"approaches":[14],"achieve":[15],"high":[16],"accuracy":[17],"but":[18],"require":[19],"substantial":[20],"parameters":[21],"and":[22,60,74,85,94],"training":[23],"data.":[24],"Recent":[25],"compression-based":[26],"methods":[27],"compress":[28,57],"entire":[29],"sequences,":[30],"potentially":[31],"missing":[32],"fine":[33],"grained":[34],"neighboring":[35],"information":[36],"critical":[37],"classification.":[39],"We":[40],"propose":[41],"a":[42,108],"novel":[43],"approach":[44,106],"integrating":[45],"Gzip":[46],"compression":[47],"with":[48],"an":[49],"incremental":[50],"k-mer":[51],"strategy.":[52],"Unlike":[53],"conventional":[54],"methods,":[55,115],"we":[56],"individual":[58],"k-mers":[59],"incrementally":[61],"build":[62],"subsequence":[63],"compressions,":[64],"preserving":[65],"amino":[66],"acid-level":[67],"context.":[68],"Using":[69],"Normalized":[70],"Compression":[71],"Distance":[72],"(NCD)":[73],"kernel-based":[75],"embeddings,":[76],"our":[77],"parameter-free":[78],"method":[79],"achieves":[80],"state-of-the-art":[81],"performance":[82],"on":[83],"breast":[84],"lung":[86],"ACP":[88],"datasets,":[89],"outperforming":[90],"deep":[91],"networks":[93],"large":[95],"language":[96],"models":[97],"without":[98],"requiring":[99],"custom":[100],"features":[101],"or":[102],"pre-trained":[103],"models.":[104],"Our":[105],"provides":[107],"practical,":[109],"efficient":[110],"alternative":[111],"to":[112],"computationally":[113],"intensive":[114],"proving":[116],"effective":[117],"even":[118],"in":[119],"low-resource":[120],"environments.":[121]},"counts_by_year":[],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2026-04-18T00:00:00"}