{"id":"https://openalex.org/W7147719110","doi":"https://doi.org/10.1109/tcbbio.2026.3678898","title":"Enhanced Disease Susceptible Variant Identification via Short Identity by Descent Segments","display_name":"Enhanced Disease Susceptible Variant Identification via Short Identity by Descent Segments","publication_year":2026,"publication_date":"2026-03-31","ids":{"openalex":"https://openalex.org/W7147719110","doi":"https://doi.org/10.1109/tcbbio.2026.3678898","pmid":"https://pubmed.ncbi.nlm.nih.gov/41915538"},"language":"en","primary_location":{"id":"doi:10.1109/tcbbio.2026.3678898","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2026.3678898","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080844992","display_name":"C. Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Chonghao Wang","raw_affiliation_strings":["Department of Computer Science, Hong Kong Baptist University, Kowloon Tong, Hong Kong"],"raw_orcid":"https://orcid.org/0000-0002-4259-464X","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Hong Kong Baptist University, Kowloon Tong, Hong Kong","institution_ids":["https://openalex.org/I141568987"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038837940","display_name":"Werner Pieter Veldsman","orcid":"https://orcid.org/0000-0001-9837-8332"},"institutions":[{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Werner Pieter Veldsman","raw_affiliation_strings":["Department of Computer Science, Hong Kong Baptist University, Kowloon Tong, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Hong Kong Baptist University, Kowloon Tong, Hong Kong","institution_ids":["https://openalex.org/I141568987"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101698478","display_name":"Yufen Huang","orcid":"https://orcid.org/0000-0001-5939-1091"},"institutions":[{"id":"https://openalex.org/I100135526","display_name":"BGI Group (China)","ror":"https://ror.org/045pn2j94","country_code":"CN","type":"company","lineage":["https://openalex.org/I100135526"]},{"id":"https://openalex.org/I4387153646","display_name":"BGI Research","ror":"https://ror.org/05gsxrt27","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yufen Huang","raw_affiliation_strings":["BGI Research, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BGI Research, Shenzhen, China","institution_ids":["https://openalex.org/I100135526","https://openalex.org/I4387153646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5132568235","display_name":"Xiaodong Fang","orcid":null},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaodong Fang","raw_affiliation_strings":["School of Medicine, Southern University of Science and Technology, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medicine, Southern University of Science and Technology, Shenzhen, China","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5132569926","display_name":"Lu Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I141568987","display_name":"Hong Kong Baptist University","ror":"https://ror.org/0145fw131","country_code":"HK","type":"education","lineage":["https://openalex.org/I141568987"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Lu Zhang","raw_affiliation_strings":["Department of Computer Science, Hong Kong Baptist University, Kowloon Tong, Hong Kong"],"raw_orcid":"https://orcid.org/0000-0002-2794-7371","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Hong Kong Baptist University, Kowloon Tong, Hong Kong","institution_ids":["https://openalex.org/I141568987"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.34037201,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"23","issue":"3","first_page":"1343","last_page":"1354"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.6868000030517578,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.6868000030517578,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.2824999988079071,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.007300000172108412,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identity-by-descent","display_name":"Identity by descent","score":0.7509999871253967},{"id":"https://openalex.org/keywords/silo","display_name":"Silo","score":0.6972000002861023},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6955000162124634},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.6360999941825867},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5131999850273132},{"id":"https://openalex.org/keywords/inflammatory-bowel-disease","display_name":"Inflammatory bowel disease","score":0.48890000581741333}],"concepts":[{"id":"https://openalex.org/C178221405","wikidata":"https://www.wikidata.org/wiki/Q5988338","display_name":"Identity by descent","level":5,"score":0.7509999871253967},{"id":"https://openalex.org/C2778024958","wikidata":"https://www.wikidata.org/wiki/Q213643","display_name":"Silo","level":2,"score":0.6972000002861023},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6955000162124634},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.6360999941825867},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5131999850273132},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.512499988079071},{"id":"https://openalex.org/C2778260677","wikidata":"https://www.wikidata.org/wiki/Q917447","display_name":"Inflammatory bowel disease","level":3,"score":0.48890000581741333},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46059998869895935},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4408000111579895},{"id":"https://openalex.org/C2776637919","wikidata":"https://www.wikidata.org/wiki/Q624380","display_name":"Descent (aeronautics)","level":2,"score":0.3513000011444092},{"id":"https://openalex.org/C2778355321","wikidata":"https://www.wikidata.org/wiki/Q17079427","display_name":"Identity (music)","level":2,"score":0.34459999203681946},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2969000041484833},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2928999960422516},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.2906000018119812},{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.2651999890804291},{"id":"https://openalex.org/C153876917","wikidata":"https://www.wikidata.org/wiki/Q899704","display_name":"Traceability","level":2,"score":0.2581999897956848}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbbio.2026.3678898","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2026.3678898","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41915538","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41915538","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1990275569","https://openalex.org/W2027355116","https://openalex.org/W2027790734","https://openalex.org/W2079979147","https://openalex.org/W2091030271","https://openalex.org/W2098066250","https://openalex.org/W2109781356","https://openalex.org/W2110747516","https://openalex.org/W2148526950","https://openalex.org/W2148874079","https://openalex.org/W2154866190","https://openalex.org/W2318508995","https://openalex.org/W2737639704","https://openalex.org/W2775410262","https://openalex.org/W2951641704","https://openalex.org/W2951886963","https://openalex.org/W2955479321","https://openalex.org/W2964006510","https://openalex.org/W2973267506","https://openalex.org/W2978740330","https://openalex.org/W2994938434","https://openalex.org/W3011468538","https://openalex.org/W3012452819","https://openalex.org/W3036086107","https://openalex.org/W3047717920","https://openalex.org/W3107568262","https://openalex.org/W3121585420","https://openalex.org/W3169590927","https://openalex.org/W3174985893","https://openalex.org/W4214613209","https://openalex.org/W4221069327","https://openalex.org/W4294012180","https://openalex.org/W4386251031","https://openalex.org/W4389786907","https://openalex.org/W4390616142","https://openalex.org/W4390971876"],"related_works":[],"abstract_inverted_index":{"Rare":[0],"diseases":[1,168],"affect":[2],"millions":[3],"of":[4,160,173,189],"individuals":[5],"worldwide,":[6],"yet":[7],"diagnostic":[8,164],"yields":[9,165],"for":[10,166,201],"them":[11],"still":[12],"remain":[13],"low.":[14],"Among":[15],"variant":[16],"identification":[17,172],"approaches,":[18],"identity":[19],"by":[20,169],"descent":[21],"(IBD)":[22],"mapping":[23],"is":[24],"used":[25],"to":[26,46,61,78,103,162,196],"identify":[27,47],"disease":[28,63,136,176],"susceptible":[29,64,137,177],"variants":[30,49,65,102,138,150,178],"originating":[31],"from":[32,121],"a":[33,58,75,109],"recent":[34],"common":[35,93],"ancestor":[36],"among":[37],"affected":[38],"individuals,":[39],"but":[40],"existing":[41,132],"IBD":[42,52,71,80,89,106,141,153,181,191],"detection":[43,188],"models":[44,133],"struggle":[45],"these":[48,149],"in":[50,66,115,134,147,179],"short":[51,68,105,140,180,190],"segments.":[53,72,81,154,182],"Here,":[54],"we":[55,184],"introduce":[56],"SILO,":[57],"novel":[59],"model":[60],"detect":[62,79,104],"both":[67],"and":[69,118,143],"long":[70,88],"SILO":[73,86,99,114,130,161],"employs":[74],"two-stage":[76],"procedure":[77],"In":[82,95],"the":[83,96,122,158,171,187],"first":[84],"stage,":[85,98],"identifies":[87],"segments":[90,107,192],"based":[91],"on":[92],"variants.":[94],"second":[97],"utilizes":[100],"rare":[101,167],"using":[108],"seed-and-extend":[110],"algorithm.":[111],"We":[112],"evaluated":[113],"simulated":[116],"data":[117,120],"real":[119],"1000":[123],"Genomes":[124],"Project.":[125],"Our":[126],"results":[127],"demonstrate":[128],"that":[129,186],"outperforms":[131],"detecting":[135,148],"within":[139,151],"segments,":[142],"show":[144],"comparable":[145],"performance":[146],"longer":[152],"These":[155],"findings":[156],"highlight":[157],"potential":[159],"increase":[163],"enhancing":[170],"previously":[174],"overlooked":[175],"Nonetheless,":[183],"note":[185],"remains":[193],"challenging":[194],"due":[195],"limited":[197],"precision,":[198],"leaving":[199],"room":[200],"future":[202],"improvement.":[203]},"counts_by_year":[],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2026-04-02T00:00:00"}
