{"id":"https://openalex.org/W4413344075","doi":"https://doi.org/10.1109/tcbbio.2025.3600428","title":"A Cell-Cell Interaction Network Based Method for Identifying Lymph Node Metastasis and Characterizing Lung Cancer Progression","display_name":"A Cell-Cell Interaction Network Based Method for Identifying Lymph Node Metastasis and Characterizing Lung Cancer Progression","publication_year":2025,"publication_date":"2025-08-19","ids":{"openalex":"https://openalex.org/W4413344075","doi":"https://doi.org/10.1109/tcbbio.2025.3600428"},"language":"en","primary_location":{"id":"doi:10.1109/tcbbio.2025.3600428","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3600428","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100335132","display_name":"Xiong Li","orcid":"https://orcid.org/0000-0001-6619-554X"},"institutions":[{"id":"https://openalex.org/I13985625","display_name":"East China Jiaotong University","ror":"https://ror.org/05x2f1m38","country_code":"CN","type":"education","lineage":["https://openalex.org/I13985625"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiong Li","raw_affiliation_strings":["School of Information and Software Engineering, East China Jiaotong University, Nanchang, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Software Engineering, East China Jiaotong University, Nanchang, China","institution_ids":["https://openalex.org/I13985625"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100609148","display_name":"Chuang Chen","orcid":"https://orcid.org/0000-0002-8168-041X"},"institutions":[{"id":"https://openalex.org/I13985625","display_name":"East China Jiaotong University","ror":"https://ror.org/05x2f1m38","country_code":"CN","type":"education","lineage":["https://openalex.org/I13985625"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chuang Chen","raw_affiliation_strings":["School of Information and Software Engineering, East China Jiaotong University, Nanchang, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Software Engineering, East China Jiaotong University, Nanchang, China","institution_ids":["https://openalex.org/I13985625"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100459843","display_name":"Yixin Li","orcid":"https://orcid.org/0000-0003-0400-6883"},"institutions":[{"id":"https://openalex.org/I13985625","display_name":"East China Jiaotong University","ror":"https://ror.org/05x2f1m38","country_code":"CN","type":"education","lineage":["https://openalex.org/I13985625"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yixin Li","raw_affiliation_strings":["School of Information and Software Engineering, East China Jiaotong University, Nanchang, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Software Engineering, East China Jiaotong University, Nanchang, China","institution_ids":["https://openalex.org/I13985625"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009249011","display_name":"Yangkai Lin","orcid":"https://orcid.org/0000-0003-4558-652X"},"institutions":[{"id":"https://openalex.org/I13985625","display_name":"East China Jiaotong University","ror":"https://ror.org/05x2f1m38","country_code":"CN","type":"education","lineage":["https://openalex.org/I13985625"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yangkai Lin","raw_affiliation_strings":["School of Information and Software Engineering, East China Jiaotong University, Nanchang, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Software Engineering, East China Jiaotong University, Nanchang, China","institution_ids":["https://openalex.org/I13985625"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101421759","display_name":"Juan Zhou","orcid":"https://orcid.org/0000-0002-1181-7134"},"institutions":[{"id":"https://openalex.org/I13985625","display_name":"East China Jiaotong University","ror":"https://ror.org/05x2f1m38","country_code":"CN","type":"education","lineage":["https://openalex.org/I13985625"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juan Zhou","raw_affiliation_strings":["School of Information and Software Engineering, East China Jiaotong University, Nanchang, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Software Engineering, East China Jiaotong University, Nanchang, China","institution_ids":["https://openalex.org/I13985625"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100373745","display_name":"Xiaohong Chen","orcid":"https://orcid.org/0000-0002-9797-8384"},"institutions":[{"id":"https://openalex.org/I13985625","display_name":"East China Jiaotong University","ror":"https://ror.org/05x2f1m38","country_code":"CN","type":"education","lineage":["https://openalex.org/I13985625"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Chen","raw_affiliation_strings":["School of Information and Software Engineering, East China Jiaotong University, Nanchang, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Software Engineering, East China Jiaotong University, Nanchang, China","institution_ids":["https://openalex.org/I13985625"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114204997","display_name":"Xuan Feng","orcid":"https://orcid.org/0000-0002-0338-3145"},"institutions":[{"id":"https://openalex.org/I13985625","display_name":"East China Jiaotong University","ror":"https://ror.org/05x2f1m38","country_code":"CN","type":"education","lineage":["https://openalex.org/I13985625"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuan Feng","raw_affiliation_strings":["School of Information and Software Engineering, East China Jiaotong University, Nanchang, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Software Engineering, East China Jiaotong University, Nanchang, China","institution_ids":["https://openalex.org/I13985625"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101407245","display_name":"Yu Luo","orcid":"https://orcid.org/0000-0002-9570-796X"},"institutions":[{"id":"https://openalex.org/I13985625","display_name":"East China Jiaotong University","ror":"https://ror.org/05x2f1m38","country_code":"CN","type":"education","lineage":["https://openalex.org/I13985625"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuchao Luo","raw_affiliation_strings":["School of Information and Software Engineering, East China Jiaotong University, Nanchang, China"],"affiliations":[{"raw_affiliation_string":"School of Information and Software Engineering, East China Jiaotong University, Nanchang, China","institution_ids":["https://openalex.org/I13985625"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100353673","display_name":"Hao Chen","orcid":"https://orcid.org/0009-0001-6480-7976"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I198357462","display_name":"Changsha University","ror":"https://ror.org/011d8sm39","country_code":"CN","type":"education","lineage":["https://openalex.org/I198357462"]},{"id":"https://openalex.org/I56934997","display_name":"Changsha University of Science and Technology","ror":"https://ror.org/03yph8055","country_code":"CN","type":"education","lineage":["https://openalex.org/I56934997"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haowen Chen","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","College of Computer Science and Electronic Engineering, Human University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Human University, Changsha, China","institution_ids":["https://openalex.org/I198357462","https://openalex.org/I56934997"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5100335132"],"corresponding_institution_ids":["https://openalex.org/I13985625"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.19031114,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"22","issue":"6","first_page":"2750","last_page":"2763"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8235999941825867,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8235999941825867,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8144999742507935,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.8062000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lung-cancer","display_name":"Lung cancer","score":0.7297652363777161},{"id":"https://openalex.org/keywords/cancer-metastasis","display_name":"Cancer metastasis","score":0.5842528939247131},{"id":"https://openalex.org/keywords/lymph-node-metastasis","display_name":"Lymph node metastasis","score":0.5782361030578613},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.5717096328735352},{"id":"https://openalex.org/keywords/metastasis","display_name":"Metastasis","score":0.5055258274078369},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.45084479451179504},{"id":"https://openalex.org/keywords/lymph-node","display_name":"Lymph node","score":0.440360426902771},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.42015042901039124},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.41990113258361816},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37080949544906616},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.3611462712287903},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.3511645793914795},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34726250171661377},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.3221239447593689},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31112879514694214},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.2138063609600067},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.12376976013183594},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.05608999729156494}],"concepts":[{"id":"https://openalex.org/C2776256026","wikidata":"https://www.wikidata.org/wiki/Q47912","display_name":"Lung cancer","level":2,"score":0.7297652363777161},{"id":"https://openalex.org/C2992691968","wikidata":"https://www.wikidata.org/wiki/Q181876","display_name":"Cancer metastasis","level":4,"score":0.5842528939247131},{"id":"https://openalex.org/C2992571226","wikidata":"https://www.wikidata.org/wiki/Q170758","display_name":"Lymph node metastasis","level":4,"score":0.5782361030578613},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.5717096328735352},{"id":"https://openalex.org/C2779013556","wikidata":"https://www.wikidata.org/wiki/Q181876","display_name":"Metastasis","level":3,"score":0.5055258274078369},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.45084479451179504},{"id":"https://openalex.org/C2780849966","wikidata":"https://www.wikidata.org/wiki/Q170758","display_name":"Lymph node","level":2,"score":0.440360426902771},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.42015042901039124},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.41990113258361816},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37080949544906616},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.3611462712287903},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.3511645793914795},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34726250171661377},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.3221239447593689},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31112879514694214},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.2138063609600067},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.12376976013183594},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.05608999729156494},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tcbbio.2025.3600428","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3600428","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.7200000286102295}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W2024136918","https://openalex.org/W2066949228","https://openalex.org/W2070030959","https://openalex.org/W2102590613","https://openalex.org/W2110643416","https://openalex.org/W2115486450","https://openalex.org/W2159675211","https://openalex.org/W2189560060","https://openalex.org/W2301707196","https://openalex.org/W2794480084","https://openalex.org/W2865352686","https://openalex.org/W2900144939","https://openalex.org/W2900411771","https://openalex.org/W2936414047","https://openalex.org/W2943598479","https://openalex.org/W2959950520","https://openalex.org/W2968482839","https://openalex.org/W3010838109","https://openalex.org/W3022968840","https://openalex.org/W3041062936","https://openalex.org/W3128085031","https://openalex.org/W3132661792","https://openalex.org/W3159582117","https://openalex.org/W3179575040","https://openalex.org/W3184308115","https://openalex.org/W3187817453","https://openalex.org/W3189383967","https://openalex.org/W3191325367","https://openalex.org/W3199242506","https://openalex.org/W3212143351","https://openalex.org/W4206155926","https://openalex.org/W4206299953","https://openalex.org/W4214606145","https://openalex.org/W4224031421","https://openalex.org/W4229659678","https://openalex.org/W4284678206","https://openalex.org/W4293812148","https://openalex.org/W4306861482","https://openalex.org/W4308118572","https://openalex.org/W4308834549","https://openalex.org/W4310060674","https://openalex.org/W4312094540","https://openalex.org/W4316507588"],"related_works":["https://openalex.org/W2064573700","https://openalex.org/W2376385980","https://openalex.org/W2967366602","https://openalex.org/W1496498748","https://openalex.org/W2129774558","https://openalex.org/W1997032381","https://openalex.org/W1979593122","https://openalex.org/W2287922696","https://openalex.org/W2747701010","https://openalex.org/W407442740"],"abstract_inverted_index":{"Lymph":[0],"node":[1,33,63,106,158],"metastasis":[2,34,107,159],"is":[3,27,120,167],"an":[4],"important":[5],"decision-making":[6],"basis":[7],"for":[8,101],"lung":[9,38,73,137,140,192],"cancer":[10,39,74],"staging":[11],"and":[12,15,88,95,104,127,139,153],"clinical":[13],"treatment,":[14],"will":[16],"also":[17,66],"significantly":[18],"affect":[19],"the":[20,50,69,76,115,128,136,149,156,171,177,189,196],"prognosis":[21],"of":[22,52,72,78,108,117,124,133,135,191,198],"patients.":[23],"At":[24],"present,":[25],"there":[26],"no":[28],"research":[29],"to":[30,92,122,147,188],"identify":[31,148],"lymph":[32,62,105,157],"in":[35,183],"non-small":[36],"cell":[37,142],"(NSCLC)":[40],"using":[41],"cell-cell":[42],"interaction":[43,80,164,172],"network":[44],"(CCIN).":[45],"We":[46],"believe":[47],"that":[48,114,123,170],"utilizing":[49],"characteristics":[51],"CCIN":[53],"can":[54],"not":[55],"only":[56],"distinguish":[57],"whether":[58],"different":[59],"patients":[60],"have":[61],"metastasis,":[64],"but":[65],"help":[67],"reveal":[68],"development":[70,160,190],"process":[71],"from":[75],"perspective":[77],"molecular":[79],"networks.":[81],"This":[82],"study":[83],"utilized":[84],"graph":[85],"embedding":[86],"technology":[87],"Fisher's":[89],"exact":[90],"test":[91],"analyze":[93],"CCIN,":[94],"then":[96],"combined":[97],"with":[98,162],"a":[99],"classifier":[100],"identifying":[102],"subtypes":[103],"NSCLC.":[109],"The":[110],"experimental":[111],"results":[112],"showed":[113],"performance":[116],"our":[118,178,199],"method":[119,179],"similar":[121],"image-based":[125],"methods,":[126],"CCINs":[129],"at":[130],"each":[131],"stage":[132],"adenocarcinoma":[134],"(LUAD)":[138],"squamous":[141],"carcinoma":[143],"(LUSC)":[144],"were":[145,181],"analyzed":[146],"differential":[150],"biological":[151],"pathways,":[152],"further":[154],"characterized":[155],"profile":[161],"significant":[163],"pairs.":[165],"It":[166],"worth":[168],"noting":[169],"pair":[173],"features":[174],"identified":[175],"by":[176],"highly":[180],"enriched":[182],"some":[184],"known":[185],"pathways":[186],"related":[187],"cancer,":[193],"thus":[194],"proving":[195],"effectiveness":[197],"method.":[200]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
