{"id":"https://openalex.org/W4411408852","doi":"https://doi.org/10.1109/tcbbio.2025.3580721","title":"Probiotic\u2013Disease Association Prediction via Cross-Modal Feature Aggregation","display_name":"Probiotic\u2013Disease Association Prediction via Cross-Modal Feature Aggregation","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4411408852","doi":"https://doi.org/10.1109/tcbbio.2025.3580721","pmid":"https://pubmed.ncbi.nlm.nih.gov/40811261"},"language":"en","primary_location":{"id":"doi:10.1109/tcbbio.2025.3580721","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3580721","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061114972","display_name":"Haochen Zhao","orcid":"https://orcid.org/0000-0001-8794-3148"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Haochen Zhao","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100754952","display_name":"Bowei Li","orcid":"https://orcid.org/0000-0002-6859-4939"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bowei Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026877800","display_name":"Guihua Duan","orcid":"https://orcid.org/0000-0002-9406-6443"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guihua Duan","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100438347","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0001-9548-1465"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5061114972"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15535709,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"22","issue":"5","first_page":"1","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.7328000068664551,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.7328000068664551,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11396","display_name":"Artificial Intelligence in Healthcare","score":0.7006000280380249,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.7057343125343323},{"id":"https://openalex.org/keywords/modal","display_name":"Modal","score":0.6776798367500305},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5522456765174866},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5489792823791504},{"id":"https://openalex.org/keywords/probiotic","display_name":"Probiotic","score":0.4970152676105499},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37350887060165405},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34996217489242554},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.30083805322647095},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25870585441589355},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.16851097345352173},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.14615747332572937},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.14546296000480652},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.14271971583366394},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.08869212865829468},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07148566842079163}],"concepts":[{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.7057343125343323},{"id":"https://openalex.org/C71139939","wikidata":"https://www.wikidata.org/wiki/Q910194","display_name":"Modal","level":2,"score":0.6776798367500305},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5522456765174866},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5489792823791504},{"id":"https://openalex.org/C2780255968","wikidata":"https://www.wikidata.org/wiki/Q1816730","display_name":"Probiotic","level":3,"score":0.4970152676105499},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37350887060165405},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34996217489242554},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.30083805322647095},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25870585441589355},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.16851097345352173},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.14615747332572937},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.14546296000480652},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.14271971583366394},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.08869212865829468},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07148566842079163},{"id":"https://openalex.org/C188027245","wikidata":"https://www.wikidata.org/wiki/Q750446","display_name":"Polymer chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019936","descriptor_name":"Probiotics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019936","descriptor_name":"Probiotics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019936","descriptor_name":"Probiotics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbbio.2025.3580721","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3580721","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40811261","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40811261","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6399999856948853,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2984222266","https://openalex.org/W2468853327","https://openalex.org/W3174709511","https://openalex.org/W2033507994","https://openalex.org/W3037335164","https://openalex.org/W2767503609","https://openalex.org/W2065096163","https://openalex.org/W2783640880","https://openalex.org/W1694758928","https://openalex.org/W4407245433"],"abstract_inverted_index":{"Probiotics":[0],"are":[1,34],"active":[2],"microorganisms":[3],"that":[4,141],"provide":[5],"substantial":[6],"health":[7],"benefits.":[8],"They":[9],"can":[10],"serve":[11],"as":[12,177],"an":[13],"alternative":[14],"or":[15],"complement":[16],"to":[17,62,133],"medications,":[18],"enabling":[19],"effective":[20],"and":[21,36,65,70,78,107,110,123,125,130,154,166],"targeted":[22],"treatment":[23],"for":[24,31,41,96,156,180],"various":[25,114],"diseases.":[26,79],"However,":[27],"traditional":[28],"experimental":[29],"methods":[30,52,59],"screening":[32],"probiotics":[33,77,122],"time-consuming":[35],"labor-intensive,":[37],"underscoring":[38,174],"the":[39,68,72,88,152,170],"need":[40],"efficient":[42],"computational":[43],"approaches.":[44],"While":[45],"some":[46,127],"studies":[47,162],"have":[48],"introduced":[49],"link":[50],"prediction":[51],"based":[53,92],"on":[54,93,163],"known":[55],"probiotic-disease":[56,98,104,182],"associations,":[57],"these":[58,82,135],"often":[60],"fail":[61],"address":[63,81],"errors":[64],"noise":[66],"within":[67],"dataset":[69,106],"overlook":[71],"rich,":[73],"intrinsic":[74],"features":[75,120],"of":[76,121,172],"To":[80],"limitations,":[83],"this":[84],"paper":[85],"presents":[86],"MFFPDA,":[87,173],"first":[89],"deep-learning":[90],"framework":[91],"multi-feature":[94],"fusion":[95,131],"predicting":[97,181],"associations.":[99,183],"We":[100],"systematically":[101],"screened":[102],"a":[103,178],"association":[105],"collected":[108],"probiotic":[109],"disease-related":[111],"data":[112],"from":[113],"sources.":[115],"Furthermore,":[116],"we":[117],"calculate":[118],"multiple":[119],"diseases,":[124],"design":[126],"feature":[128],"extraction":[129],"modules":[132],"integrate":[134],"features.":[136,159],"The":[137],"comparison":[138,146],"results":[139,150],"demonstrate":[140],"MFFPDA":[142],"surpasses":[143],"all":[144],"other":[145],"methods.":[147],"Feature":[148],"visualization":[149],"confirmed":[151],"necessity":[153],"rationale":[155],"incorporating":[157],"multi-source":[158],"Additionally,":[160],"case":[161],"colonic":[164],"pseudo-obstruction":[165],"dysentery":[167],"further":[168],"validated":[169],"effectiveness":[171],"its":[175],"reliability":[176],"tool":[179]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
