{"id":"https://openalex.org/W4409326118","doi":"https://doi.org/10.1109/tcbbio.2025.3559713","title":"TAPE_selection: Organelle Proteins Classification With TAPE Feature Selection","display_name":"TAPE_selection: Organelle Proteins Classification With TAPE Feature Selection","publication_year":2025,"publication_date":"2025-04-10","ids":{"openalex":"https://openalex.org/W4409326118","doi":"https://doi.org/10.1109/tcbbio.2025.3559713","pmid":"https://pubmed.ncbi.nlm.nih.gov/40811340"},"language":"en","primary_location":{"id":"doi:10.1109/tcbbio.2025.3559713","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3559713","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030950144","display_name":"Wenzheng Bao","orcid":"https://orcid.org/0000-0002-1471-5432"},"institutions":[{"id":"https://openalex.org/I124841900","display_name":"Xuzhou University of Technology","ror":"https://ror.org/02315by94","country_code":"CN","type":"education","lineage":["https://openalex.org/I124841900"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenzheng Bao","raw_affiliation_strings":["School of Information and Electrical Engineering, Xuzhou University of Technology, Xuzhou, China"],"raw_orcid":"https://orcid.org/0000-0002-1471-5432","affiliations":[{"raw_affiliation_string":"School of Information and Electrical Engineering, Xuzhou University of Technology, Xuzhou, China","institution_ids":["https://openalex.org/I124841900"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Bin Yang","orcid":"https://orcid.org/0000-0001-6879-7069"},"institutions":[{"id":"https://openalex.org/I4210159676","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210159676"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Yang","raw_affiliation_strings":["School of Information science and Engineering, Zaozhuang University, Zaozhuang, China"],"raw_orcid":"https://orcid.org/0000-0001-6879-7069","affiliations":[{"raw_affiliation_string":"School of Information science and Engineering, Zaozhuang University, Zaozhuang, China","institution_ids":["https://openalex.org/I4210159676"]}]},{"author_position":"last","author":{"id":null,"display_name":"Baitong Chen","orcid":"https://orcid.org/0000-0002-7031-9661"},"institutions":[{"id":"https://openalex.org/I177388780","display_name":"Xuzhou Medical College","ror":"https://ror.org/04fe7hy80","country_code":"CN","type":"education","lineage":["https://openalex.org/I177388780"]},{"id":"https://openalex.org/I4210143072","display_name":"Xuzhou No.1 People's Hospital","ror":"https://ror.org/05ca6eb43","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210143072"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Baitong Chen","raw_affiliation_strings":["Xuzhou Municipal Hospital of Xuzhou Medical University, Xuzhou, China","Xuzhou First People&#x0027;s Hospital, Xuzhou, China"],"raw_orcid":"https://orcid.org/0000-0002-7031-9661","affiliations":[{"raw_affiliation_string":"Xuzhou Municipal Hospital of Xuzhou Medical University, Xuzhou, China","institution_ids":["https://openalex.org/I177388780"]},{"raw_affiliation_string":"Xuzhou First People&#x0027;s Hospital, Xuzhou, China","institution_ids":["https://openalex.org/I177388780","https://openalex.org/I4210143072"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.9796,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.85478799,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"22","issue":"4","first_page":"1542","last_page":"1552"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9660000205039978,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9660000205039978,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.7815768718719482},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.6597285270690918},{"id":"https://openalex.org/keywords/organelle","display_name":"Organelle","score":0.4711286723613739},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4576212167739868},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44798779487609863},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3826916813850403},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38087543845176697},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3653222322463989},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3540063798427582},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2050952911376953}],"concepts":[{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.7815768718719482},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.6597285270690918},{"id":"https://openalex.org/C168240541","wikidata":"https://www.wikidata.org/wiki/Q45948","display_name":"Organelle","level":2,"score":0.4711286723613739},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4576212167739868},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44798779487609863},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3826916813850403},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38087543845176697},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3653222322463989},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3540063798427582},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2050952911376953},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbbio.2025.3559713","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3559713","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40811340","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40811340","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.44999998807907104,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"awards":[{"id":"https://openalex.org/G2117159217","display_name":null,"funder_award_id":"SBK2019040953","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"},{"id":"https://openalex.org/G2746719638","display_name":null,"funder_award_id":"KC21047","funder_id":"https://openalex.org/F4320336657","funder_display_name":"Xuzhou Science and Technology Program"},{"id":"https://openalex.org/G7134451153","display_name":null,"funder_award_id":"61,902,337","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322769","display_name":"Natural Science Foundation of Jiangsu Province","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320336657","display_name":"Xuzhou Science and Technology Program","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":73,"referenced_works":["https://openalex.org/W1980759842","https://openalex.org/W1982228765","https://openalex.org/W1993711987","https://openalex.org/W1997967533","https://openalex.org/W2027171594","https://openalex.org/W2027514285","https://openalex.org/W2036253883","https://openalex.org/W2038335468","https://openalex.org/W2067092688","https://openalex.org/W2082605863","https://openalex.org/W2103017472","https://openalex.org/W2103132055","https://openalex.org/W2108206279","https://openalex.org/W2144620643","https://openalex.org/W2145957695","https://openalex.org/W2151180344","https://openalex.org/W2154477800","https://openalex.org/W2160979370","https://openalex.org/W2331302109","https://openalex.org/W2730472814","https://openalex.org/W2767106145","https://openalex.org/W2884869637","https://openalex.org/W2889897443","https://openalex.org/W2906426591","https://openalex.org/W2912115890","https://openalex.org/W2919558416","https://openalex.org/W2943642976","https://openalex.org/W2946026608","https://openalex.org/W2948397929","https://openalex.org/W2948728900","https://openalex.org/W2971418461","https://openalex.org/W2972075796","https://openalex.org/W2977368063","https://openalex.org/W2985037923","https://openalex.org/W2985388048","https://openalex.org/W2995918333","https://openalex.org/W3015773004","https://openalex.org/W3022660602","https://openalex.org/W3037347412","https://openalex.org/W3038337756","https://openalex.org/W3044938537","https://openalex.org/W3047361096","https://openalex.org/W3084410714","https://openalex.org/W3091358760","https://openalex.org/W3092905639","https://openalex.org/W3093371308","https://openalex.org/W3093610272","https://openalex.org/W3106567593","https://openalex.org/W3111862902","https://openalex.org/W3124828689","https://openalex.org/W3126823466","https://openalex.org/W3130592954","https://openalex.org/W3134438536","https://openalex.org/W3134787367","https://openalex.org/W3149930164","https://openalex.org/W3155606055","https://openalex.org/W3164629661","https://openalex.org/W3165517648","https://openalex.org/W3167888193","https://openalex.org/W3186319380","https://openalex.org/W3205443258","https://openalex.org/W3217720585","https://openalex.org/W4210620501","https://openalex.org/W4285127990","https://openalex.org/W4285155735","https://openalex.org/W4287510106","https://openalex.org/W4288456512","https://openalex.org/W4364359415","https://openalex.org/W4387579076","https://openalex.org/W4391324361","https://openalex.org/W4400803523","https://openalex.org/W6679434410","https://openalex.org/W6763868836"],"related_works":["https://openalex.org/W1979374213","https://openalex.org/W2042187600","https://openalex.org/W2093785836","https://openalex.org/W4387354525","https://openalex.org/W2418253448","https://openalex.org/W4242384374","https://openalex.org/W2977626908","https://openalex.org/W2011585419","https://openalex.org/W4386564352","https://openalex.org/W2952668426"],"abstract_inverted_index":{"Proteins":[0,33],"are":[1,9,34,66,93],"the":[2,15,27,54,59,110,114,139,149,162,165,180],"material":[3],"foundation":[4],"of":[5,19,30,50,56,75,113],"life,":[6],"and":[7,42,58,73,82,89,132,156,170],"they":[8,65],"organic":[10,17],"macromolecules":[11],"that":[12,37,64,85],"make":[13,38],"up":[14,39],"basic":[16],"matter":[18],"cells.":[20],"Therefore,":[21],"proteins":[22,76,92,130],"can":[23],"be":[24],"considered":[25],"as":[26],"main":[28],"bearers":[29],"life":[31,69],"activities.":[32],"important":[35,61],"components":[36],"all":[40],"cells":[41],"tissues":[43],"in":[44,97,121],"an":[45,51,94],"organism.":[46],"All":[47],"critical":[48],"elements":[49],"organism":[52],"require":[53],"participation":[55],"proteins,":[57,124],"most":[60],"thing":[62],"is":[63,79],"related":[67],"to":[68,108,137,178],"phenomena.":[70],"The":[71],"transportation":[72],"localization":[74],"within":[77],"organelles":[78],"a":[80],"complex":[81],"delicate":[83],"process":[84],"involves":[86],"multiple":[87],"steps":[88],"mechanisms.":[90],"Organelle":[91],"essential":[95],"element":[96],"several":[98],"biological":[99],"processions.":[100],"In":[101,135],"this":[102],"work,":[103],"we":[104,142],"proposed":[105],"TAPE_selection":[106],"methods":[107],"reduce":[109,138,179],"useless":[111,140],"information":[112],"Tasks":[115],"Assessing":[116],"Protein":[117],"Embed-dings":[118],"(TAPE)":[119],"feature":[120,145,182],"some":[122,144],"organelle":[123],"which":[125],"mainly":[126],"include":[127],"plant":[128],"vacuole":[129],"(PVPs)":[131],"peroxidase":[133],"ones.":[134],"order":[136],"information,":[141],"employed":[143,177],"selection":[146],"Strategies,":[147],"including":[148],"Chi-Squared":[150],"Test,":[151],"Minimum":[152],"Redundancy":[153],"Maximum":[154],"Relevance(mRMR),":[155],"Neighborhood":[157],"Components":[158],"Analysis":[159],"(NCA).":[160],"With":[161],"selected":[163],"feature,":[164],"Proper":[166],"Orthogonal":[167],"Decomposition":[168],"(POD)":[169],"t-distributed":[171],"Stochastic":[172],"Neighbor":[173],"Embedding":[174],"(t-SNE)":[175],"were":[176],"reconstructed":[181],"scale.":[183]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2}],"updated_date":"2026-08-08T01:25:22.217667","created_date":"2025-10-10T00:00:00"}
