{"id":"https://openalex.org/W4407949733","doi":"https://doi.org/10.1109/tcbbio.2025.3545871","title":"Faster Algorithms for Constructing Frequency Difference Consensus Trees","display_name":"Faster Algorithms for Constructing Frequency Difference Consensus Trees","publication_year":2025,"publication_date":"2025-02-26","ids":{"openalex":"https://openalex.org/W4407949733","doi":"https://doi.org/10.1109/tcbbio.2025.3545871","pmid":"https://pubmed.ncbi.nlm.nih.gov/40811329"},"language":"en","primary_location":{"id":"doi:10.1109/tcbbio.2025.3545871","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3545871","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012282413","display_name":"Biing-Feng Wang","orcid":"https://orcid.org/0000-0002-8109-1914"},"institutions":[{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Biing-Feng Wang","raw_affiliation_strings":["Department of Computer Science, National Tsing Hua University Hsinchu, Hsinchu, Republic of China","Department of Computer Science, National Tsing Hua University Hsinchu, TaiwanChina"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, National Tsing Hua University Hsinchu, Hsinchu, Republic of China","institution_ids":["https://openalex.org/I25846049"]},{"raw_affiliation_string":"Department of Computer Science, National Tsing Hua University Hsinchu, TaiwanChina","institution_ids":["https://openalex.org/I25846049"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050981047","display_name":"Chih-Yu Li","orcid":"https://orcid.org/0000-0003-2805-8960"},"institutions":[{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Chih-Yu Li","raw_affiliation_strings":["Department of Computer Science, National Tsing Hua University Hsinchu, Hsinchu, Republic of China","Department of Computer Science, National Tsing Hua University Hsinchu, TaiwanChina"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, National Tsing Hua University Hsinchu, Hsinchu, Republic of China","institution_ids":["https://openalex.org/I25846049"]},{"raw_affiliation_string":"Department of Computer Science, National Tsing Hua University Hsinchu, TaiwanChina","institution_ids":["https://openalex.org/I25846049"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5092873257","display_name":"Wen-Horng Sheu","orcid":"https://orcid.org/0000-0002-2707-8612"},"institutions":[{"id":"https://openalex.org/I25846049","display_name":"National Tsing Hua University","ror":"https://ror.org/00zdnkx70","country_code":"TW","type":"education","lineage":["https://openalex.org/I25846049"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Wen-Horng Sheu","raw_affiliation_strings":["Department of Computer Science, National Tsing Hua University Hsinchu, Hsinchu, Republic of China","Department of Computer Science, National Tsing Hua University Hsinchu, TaiwanChina"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, National Tsing Hua University Hsinchu, Hsinchu, Republic of China","institution_ids":["https://openalex.org/I25846049"]},{"raw_affiliation_string":"Department of Computer Science, National Tsing Hua University Hsinchu, TaiwanChina","institution_ids":["https://openalex.org/I25846049"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5012282413"],"corresponding_institution_ids":["https://openalex.org/I25846049"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03578854,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"22","issue":"4","first_page":"1358","last_page":"1368"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10829","display_name":"Interconnection Networks and Systems","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10829","display_name":"Interconnection Networks and Systems","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10796","display_name":"Cooperative Communication and Network Coding","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5343883037567139},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5112595558166504}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5343883037567139},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5112595558166504}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbbio.2025.3545871","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3545871","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40811329","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40811329","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1497575587","https://openalex.org/W1501342714","https://openalex.org/W1589227310","https://openalex.org/W1970691969","https://openalex.org/W1971935354","https://openalex.org/W1973044036","https://openalex.org/W1987854012","https://openalex.org/W1994227420","https://openalex.org/W1995028654","https://openalex.org/W1996437477","https://openalex.org/W2011999472","https://openalex.org/W2015332750","https://openalex.org/W2053805369","https://openalex.org/W2071412858","https://openalex.org/W2074507113","https://openalex.org/W2074679046","https://openalex.org/W2084224084","https://openalex.org/W2110932309","https://openalex.org/W2113068240","https://openalex.org/W2135259291","https://openalex.org/W2137120608","https://openalex.org/W2151692850","https://openalex.org/W2156343434","https://openalex.org/W2160350701","https://openalex.org/W2423687995","https://openalex.org/W2577202510","https://openalex.org/W2999635039","https://openalex.org/W4200303939","https://openalex.org/W4233815609","https://openalex.org/W4238288420","https://openalex.org/W4246219036","https://openalex.org/W4254593935","https://openalex.org/W6738676432","https://openalex.org/W6780014945","https://openalex.org/W6869340774","https://openalex.org/W6966845583"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109"],"abstract_inverted_index":{"Consensus":[0],"trees":[1,61],"have":[2],"been":[3],"widely":[4],"used":[5],"in":[6],"evolutionary":[7],"studies":[8,19],"to":[9,93],"combine":[10],"phylogenetic":[11,60],"information":[12],"of":[13,21,58,66,80],"individual":[14],"gene":[15],"trees.":[16],"This":[17,86],"paper":[18,87,100],"one":[20],"the":[22,28,53,63,90,110],"most":[23],"well-known":[24],"consensus":[25,31,56],"tree":[26,57],"methods:":[27],"frequency":[29,54],"difference":[30,55],"tree.":[32],"Jansson":[33],"et":[34,71],"al.":[35,72],"[IEEE/ACM":[36],"TCBB,":[37],"2018]":[38,74],"had":[39],"an":[40,76],"$O(":[41,81,104],"{\\text{min}}\\{":[42],"{{{k}^2}n,\\":[43],"k{{n}^2}}":[44],"\\}":[45],"+":[46],"kn\\":[47],"\\mathrm{l}{{\\mathrm{g}}^2}n":[48],")$-time":[49,106],"algorithm":[50],"for":[51],"constructing":[52],"k":[59,113,119],"on":[62],"same":[64],"set":[65],"n":[67],"taxa.":[68],"Later,":[69],"Gawrychowski":[70],"[ICALP,":[73],"gave":[75],"improved":[77],"upper":[78,91],"bound":[79,92],"{kn\\":[82],"\\mathrm{l}{{\\mathrm{g}}^2}\\":[83],"n}":[84],")$.":[85],"further":[88],"reduces":[89],"O(kn":[94],"lg":[95],"n).":[96,116],"In":[97],"addition,":[98],"this":[99],"presents":[101],"a":[102],"simple":[103],"{{{k}^2}n}":[105],"algorithm.":[107],"It":[108],"is":[109,124],"fastest":[111],"when":[112,118],"=":[114,120],"O(lg":[115],"Especially,":[117],"O(1),":[121],"linear":[122],"time":[123],"achieved.":[125]},"counts_by_year":[],"updated_date":"2025-12-22T23:10:17.713674","created_date":"2025-10-10T00:00:00"}
