{"id":"https://openalex.org/W4407691181","doi":"https://doi.org/10.1109/tcbbio.2025.3543162","title":"Equivariant Interaction-Aware Graph Network for Predicting the Binding Affinity of Protein-Ligand","display_name":"Equivariant Interaction-Aware Graph Network for Predicting the Binding Affinity of Protein-Ligand","publication_year":2025,"publication_date":"2025-02-18","ids":{"openalex":"https://openalex.org/W4407691181","doi":"https://doi.org/10.1109/tcbbio.2025.3543162","pmid":"https://pubmed.ncbi.nlm.nih.gov/40811410"},"language":"en","primary_location":{"id":"doi:10.1109/tcbbio.2025.3543162","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3543162","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090466533","display_name":"Xiaoping Min","orcid":"https://orcid.org/0000-0002-0817-0878"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaoping Min","raw_affiliation_strings":["School of Informatics, Xiamen University, Xiamen, China","School of Informatics, Xiamen University, Xiamen, Fujian, China"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108924761","display_name":"Jiajun Zou","orcid":"https://orcid.org/0009-0004-7609-897X"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiajun Zou","raw_affiliation_strings":["School of Informatics, Xiamen University, Xiamen, China","School of Informatics, Xiamen University, Xiamen, Fujian, China"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016278248","display_name":"Jun Xie","orcid":"https://orcid.org/0000-0002-1444-9234"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Xie","raw_affiliation_strings":["Institute of Artificial Intelligence, Xiamen University, Xiamen, China","Institute of Artificial Intelligence, Xiamen University, Xiamen, Fujian, China"],"affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Institute of Artificial Intelligence, Xiamen University, Xiamen, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086429544","display_name":"Qianli Yang","orcid":"https://orcid.org/0000-0003-4226-2319"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qianli Yang","raw_affiliation_strings":["Institute of Artificial Intelligence, Xiamen University, Xiamen, China","Institute of Artificial Intelligence, Xiamen University, Xiamen, Fujian, China"],"affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Institute of Artificial Intelligence, Xiamen University, Xiamen, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109766661","display_name":"Yiyang Liao","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiyang Liao","raw_affiliation_strings":["School of Informatics, Xiamen University, Xiamen, China","School of Informatics, Xiamen University, Xiamen, Fujian, China"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102387269","display_name":"Junjie Ying","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junjie Ying","raw_affiliation_strings":["Institute of Artificial Intelligence, Xiamen University, Xiamen, China","Institute of Artificial Intelligence, Xiamen University, Xiamen, Fujian, China"],"affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Institute of Artificial Intelligence, Xiamen University, Xiamen, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102603324","display_name":"Xiaocheng Jin","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaocheng Jin","raw_affiliation_strings":["Institute of Artificial Intelligence, Xiamen University, Xiamen, China","Institute of Artificial Intelligence, Xiamen University, Xiamen, Fujian, China"],"affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Institute of Artificial Intelligence, Xiamen University, Xiamen, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045955292","display_name":"Xiaoli Lu","orcid":"https://orcid.org/0000-0003-1717-2610"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoli Lu","raw_affiliation_strings":["Information and Networking Center, Xiamen University, Xiamen, China","Information and Networking Center, Xiamen University, Xiamen, Fujian, China"],"affiliations":[{"raw_affiliation_string":"Information and Networking Center, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"Information and Networking Center, Xiamen University, Xiamen, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100433174","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0002-5683-777X"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, China","National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, Fujian, China"],"affiliations":[{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067654958","display_name":"Hai Yu","orcid":"https://orcid.org/0000-0003-4086-8632"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hai Yu","raw_affiliation_strings":["National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, China","National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, Fujian, China"],"affiliations":[{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009905256","display_name":"Shengxiang Ge","orcid":"https://orcid.org/0000-0002-7165-3004"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengxiang Ge","raw_affiliation_strings":["National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, China","National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, Fujian, China"],"affiliations":[{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078732636","display_name":"Ningshao Xia","orcid":"https://orcid.org/0000-0003-0179-5266"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ningshao Xia","raw_affiliation_strings":["National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, China","National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, Fujian, China"],"affiliations":[{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University, Xiamen, Fujian, China","institution_ids":["https://openalex.org/I191208505"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5090466533"],"corresponding_institution_ids":["https://openalex.org/I191208505"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03935375,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"22","issue":"2","first_page":"855","last_page":"866"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/equivariant-map","display_name":"Equivariant map","score":0.6198358535766602},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.5329803824424744},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4859999120235443},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.4224545955657959},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3808196783065796},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3747819662094116},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3378857374191284},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2514611780643463},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22098946571350098},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1837117075920105},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.17712664604187012},{"id":"https://openalex.org/keywords/pure-mathematics","display_name":"Pure mathematics","score":0.1291624903678894}],"concepts":[{"id":"https://openalex.org/C171036898","wikidata":"https://www.wikidata.org/wiki/Q256355","display_name":"Equivariant map","level":2,"score":0.6198358535766602},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.5329803824424744},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4859999120235443},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.4224545955657959},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3808196783065796},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3747819662094116},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3378857374191284},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2514611780643463},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22098946571350098},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1837117075920105},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.17712664604187012},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.1291624903678894}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbbio.2025.3543162","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3543162","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40811410","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40811410","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1409521295","display_name":null,"funder_award_id":"20720220005","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G5570595420","display_name":null,"funder_award_id":"62272399","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6672664789","display_name":null,"funder_award_id":"20720220006","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W1530340949","https://openalex.org/W1977179663","https://openalex.org/W2012084558","https://openalex.org/W2033875159","https://openalex.org/W2076779488","https://openalex.org/W2092285329","https://openalex.org/W2099861795","https://openalex.org/W2148512505","https://openalex.org/W2266013672","https://openalex.org/W2414725821","https://openalex.org/W2502949459","https://openalex.org/W2781821160","https://openalex.org/W2784213390","https://openalex.org/W2785947426","https://openalex.org/W2803560454","https://openalex.org/W2809216727","https://openalex.org/W2949504121","https://openalex.org/W2950954328","https://openalex.org/W2974531988","https://openalex.org/W2991568194","https://openalex.org/W3010499032","https://openalex.org/W3021453944","https://openalex.org/W3080588469","https://openalex.org/W3080637781","https://openalex.org/W3150739942","https://openalex.org/W3152893301","https://openalex.org/W3159177617","https://openalex.org/W3167575787","https://openalex.org/W3177828909","https://openalex.org/W3207667351","https://openalex.org/W4315434793","https://openalex.org/W4317776906","https://openalex.org/W4321004126","https://openalex.org/W4377968189","https://openalex.org/W4379619072","https://openalex.org/W4380786758","https://openalex.org/W6628594069","https://openalex.org/W6672877473","https://openalex.org/W6780093175","https://openalex.org/W6790561777","https://openalex.org/W6810465265","https://openalex.org/W6841143912"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W3148895720","https://openalex.org/W2393913406","https://openalex.org/W2356579025","https://openalex.org/W2736697936","https://openalex.org/W3211835374","https://openalex.org/W30258475","https://openalex.org/W2548611373","https://openalex.org/W1601809778","https://openalex.org/W1541054761"],"abstract_inverted_index":{"The":[0],"success":[1],"of":[2,11,51,62,80,86,142,169],"drug":[3,174],"discovery":[4],"relies":[5],"on":[6,156],"predicting":[7,35],"the":[8,21,48,109,140,167],"binding":[9,37,94],"affinity":[10,95],"protein-ligand.":[12],"Applying":[13],"deep":[14],"learning":[15,81,112,143],"to":[16,47,92,138],"this":[17,43,68],"field":[18],"can":[19],"expedite":[20],"process":[22],"and":[23,115,146,164],"reduce":[24],"resource":[25],"consumption.":[26],"Recently,":[27],"researchers":[28],"have":[29,71],"employed":[30],"graph":[31,54],"neural":[32,55],"networks":[33],"for":[34,105],"protein-ligand":[36,65,93],"affinitiy,":[38],"showcasing":[39],"remarkable":[40],"performance.":[41],"However,":[42],"is":[44],"largely":[45],"attributed":[46],"natural":[49],"representation":[50],"biomolecule":[52],"by":[53],"networks,":[56],"rather":[57],"than":[58],"a":[59],"rational":[60],"modeling":[61,172],"interactions":[63,90,107,113,121,132],"within":[64,108,114],"complex.":[66],"In":[67],"regard,":[69],"we":[70,99,124,152],"developed":[72,153],"an":[73],"Equivariant":[74],"Interaction-aware":[75],"Graph":[76],"Network":[77],"(EIGN),":[78],"capable":[79],"3D":[82],"geometric":[83,144],"structural":[84,127],"information":[85,128],"complex":[87],"while":[88],"perceiving":[89],"related":[91],"between":[96,116,122],"nodes.":[97],"Specifically,":[98],"designed":[100],"distance-inspired":[101],"edge-gated":[102],"attention":[103],"layer":[104,137],"inter-node":[106],"complex,":[110],"uniformly":[111],"molecules.":[117],"To":[118],"precisely":[119],"simulate":[120],"nodes,":[123],"considered":[125],"local":[126],"around":[129],"nodes":[130],"when":[131],"occur.":[133],"Leveraging":[134],"equivariant":[135],"convolutional":[136],"harness":[139],"advantages":[141],"structure":[145],"drawing":[147],"insights":[148],"from":[149],"existing":[150],"work,":[151],"EIGN.":[154],"Demonstrated":[155],"two":[157],"benchmark":[158],"sets,":[159],"EIGN":[160],"presents":[161],"exceptional":[162],"performance":[163],"generalization,":[165],"highlighting":[166],"importance":[168],"accurate":[170],"interaction":[171],"in":[173],"discovery.":[175]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
