{"id":"https://openalex.org/W4407248264","doi":"https://doi.org/10.1109/tcbbio.2025.3539987","title":"Document-Level Biomedical Relation Extraction via Knowledge-Enhanced Graph and Dynamic Generative Adversarial Networks","display_name":"Document-Level Biomedical Relation Extraction via Knowledge-Enhanced Graph and Dynamic Generative Adversarial Networks","publication_year":2025,"publication_date":"2025-02-07","ids":{"openalex":"https://openalex.org/W4407248264","doi":"https://doi.org/10.1109/tcbbio.2025.3539987","pmid":"https://pubmed.ncbi.nlm.nih.gov/40811393"},"language":"en","primary_location":{"id":"doi:10.1109/tcbbio.2025.3539987","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3539987","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082868235","display_name":"Lishuang Li","orcid":"https://orcid.org/0000-0002-4189-1466"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lishuang Li","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, China","School of Computre Science, Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":"https://orcid.org/0000-0002-4189-1466","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"School of Computre Science, Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101259962","display_name":"Jing Hao","orcid":"https://orcid.org/0009-0001-6561-9731"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Hao","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, China","School of Computre Science, Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":"https://orcid.org/0009-0001-6561-9731","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"School of Computre Science, Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023815510","display_name":"Hang\u2010Jiang Lu","orcid":"https://orcid.org/0009-0002-2301-1442"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongbin Lu","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, China","School of Computre Science, Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":"https://orcid.org/0009-0002-2301-1442","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"School of Computre Science, Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103261989","display_name":"Jingyao Tang","orcid":"https://orcid.org/0000-0003-1651-8480"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingyao Tang","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, China","School of Computre Science, Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":"https://orcid.org/0000-0003-1651-8480","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"School of Computre Science, Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I27357992"],"apc_list":null,"apc_paid":null,"fwci":0.4868,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.59768723,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"22","issue":"2","first_page":"832","last_page":"841"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9628999829292297,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9101999998092651,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/adversarial-system","display_name":"Adversarial system","score":0.7934505939483643},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.7849058508872986},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5863435864448547},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.5764658451080322},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.5751555562019348},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5502802729606628},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.5189342498779297},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4371328055858612},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36430037021636963},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.23860374093055725}],"concepts":[{"id":"https://openalex.org/C37736160","wikidata":"https://www.wikidata.org/wiki/Q1801315","display_name":"Adversarial system","level":2,"score":0.7934505939483643},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.7849058508872986},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5863435864448547},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.5764658451080322},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.5751555562019348},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5502802729606628},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.5189342498779297},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4371328055858612},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36430037021636963},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.23860374093055725}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbbio.2025.3539987","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3539987","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40811393","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40811393","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8526660225","display_name":null,"funder_award_id":"62076048","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W2136640051","https://openalex.org/W2162965868","https://openalex.org/W2163303745","https://openalex.org/W2168905447","https://openalex.org/W2334487059","https://openalex.org/W2346452181","https://openalex.org/W2604314403","https://openalex.org/W2604372572","https://openalex.org/W2773309042","https://openalex.org/W2889901924","https://openalex.org/W2945027804","https://openalex.org/W2947858052","https://openalex.org/W2963014179","https://openalex.org/W2971221499","https://openalex.org/W2983166786","https://openalex.org/W3014987848","https://openalex.org/W3101327207","https://openalex.org/W3101748173","https://openalex.org/W3113440918","https://openalex.org/W3127337436","https://openalex.org/W3175344781","https://openalex.org/W3184301700","https://openalex.org/W4200077176","https://openalex.org/W4200491506","https://openalex.org/W4307299182","https://openalex.org/W4362510680","https://openalex.org/W4378419905","https://openalex.org/W4379380529","https://openalex.org/W6678830454","https://openalex.org/W6804265259"],"related_works":["https://openalex.org/W2502115930","https://openalex.org/W2482350142","https://openalex.org/W4246396837","https://openalex.org/W4307077703","https://openalex.org/W4221155469","https://openalex.org/W3198173888","https://openalex.org/W2762829504","https://openalex.org/W3045744254","https://openalex.org/W4379933534","https://openalex.org/W4282813629"],"abstract_inverted_index":{"Biomedical":[0],"document-level":[1,94],"relation":[2,8,95],"extraction":[3,96],"(RE)":[4],"aims":[5],"to":[6,57,76,130],"extract":[7,31],"facts":[9],"from":[10],"unstructured":[11],"biomedical":[12],"documents":[13,118],"and":[14,103,119,151,159,174],"plays":[15],"an":[16],"important":[17],"role":[18],"in":[19,69],"downstream":[20],"tasks.":[21],"Graph-based":[22],"methods":[23,29,52],"solve":[24],"the":[25,37,50,59,65,70,87,117,125,133,136,139,148,156,170,183],"problem":[26],"that":[27,39,182],"sequence-based":[28],"cannot":[30],"long-distance":[32],"entity":[33],"relationships,":[34],"but":[35],"ignore":[36],"fact":[38],"graph":[40,84,102,112],"node":[41,152],"connections":[42],"should":[43],"be":[44],"dynamic":[45,104,140],"rather":[46],"than":[47],"static.":[48],"Besides,":[49],"existing":[51],"usually":[53],"introduce":[54],"external":[55,79,120,126],"knowledge":[56,80,121,127],"address":[58],"method's":[60],"performance":[61],"bottleneck":[62],"caused":[63],"by":[64],"limited":[66],"information":[67,122,158,162],"contained":[68],"dataset":[71],"itself.":[72],"But":[73],"they":[74],"fail":[75],"consider":[77],"utilizing":[78],"through":[81],"explicitly":[82,131],"enriching":[83],"connectivity.":[85],"For":[86],"above":[88],"problems,":[89],"we":[90],"propose":[91],"a":[92,100,110],"novel":[93,187],"model":[97],"based":[98,115],"on":[99,116,169],"knowledge-enhanced":[101,111],"generative":[105,141],"adversarial":[106,142],"network":[107,143],"(KG-DGAN).":[108],"Specifically,":[109],"is":[113,128],"constructed":[114],"together,":[123],"where":[124],"used":[129,172],"enhance":[132],"connectivity":[134],"of":[135],"graph.":[137],"Then,":[138],"(DGAN)":[144],"can":[145],"dynamically":[146],"soften":[147],"edge":[149],"weights":[150],"representations,":[153],"which":[154],"reduces":[155],"redundant":[157],"enhances":[160],"useful":[161],"during":[163],"aggregation.":[164],"We":[165],"evaluate":[166],"our":[167],"method":[168,185],"widely":[171],"CDR":[173],"CHR":[175],"dataset.":[176],"The":[177],"final":[178],"experimental":[179],"results":[180],"confirm":[181],"proposed":[184],"achieves":[186],"state-of-the-art":[188],"performances.":[189]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2025-12-21T23:12:01.093139","created_date":"2025-10-10T00:00:00"}
