{"id":"https://openalex.org/W4406983090","doi":"https://doi.org/10.1109/tcbbio.2025.3536100","title":"DAISY: Dual-Granularity Contrastive Learning for Disease Similarity Prediction","display_name":"DAISY: Dual-Granularity Contrastive Learning for Disease Similarity Prediction","publication_year":2025,"publication_date":"2025-01-30","ids":{"openalex":"https://openalex.org/W4406983090","doi":"https://doi.org/10.1109/tcbbio.2025.3536100","pmid":"https://pubmed.ncbi.nlm.nih.gov/40811396"},"language":"en","primary_location":{"id":"doi:10.1109/tcbbio.2025.3536100","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3536100","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015955860","display_name":"Zihao Gao","orcid":"https://orcid.org/0000-0002-0424-4278"},"institutions":[{"id":"https://openalex.org/I68986083","display_name":"Northwest Normal University","ror":"https://ror.org/00gx3j908","country_code":"CN","type":"education","lineage":["https://openalex.org/I68986083"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zihao Gao","raw_affiliation_strings":["College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China","institution_ids":["https://openalex.org/I68986083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053794277","display_name":"Huifang Ma","orcid":"https://orcid.org/0000-0002-5104-8982"},"institutions":[{"id":"https://openalex.org/I68986083","display_name":"Northwest Normal University","ror":"https://ror.org/00gx3j908","country_code":"CN","type":"education","lineage":["https://openalex.org/I68986083"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huifang Ma","raw_affiliation_strings":["College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China","institution_ids":["https://openalex.org/I68986083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044069070","display_name":"Yike Wang","orcid":"https://orcid.org/0009-0002-9061-9693"},"institutions":[{"id":"https://openalex.org/I68986083","display_name":"Northwest Normal University","ror":"https://ror.org/00gx3j908","country_code":"CN","type":"education","lineage":["https://openalex.org/I68986083"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yike Wang","raw_affiliation_strings":["College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China","institution_ids":["https://openalex.org/I68986083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100701695","display_name":"Zhixin Li","orcid":"https://orcid.org/0000-0002-5313-6134"},"institutions":[{"id":"https://openalex.org/I29739308","display_name":"Guangxi Normal University","ror":"https://ror.org/02frt9q65","country_code":"CN","type":"education","lineage":["https://openalex.org/I29739308"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhixin Li","raw_affiliation_strings":["School of Computer Science and Engineering, Guangxi Normal University, Guilin, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Guangxi Normal University, Guilin, China","institution_ids":["https://openalex.org/I29739308"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015299890","display_name":"Liang Chang","orcid":"https://orcid.org/0000-0002-7262-4707"},"institutions":[{"id":"https://openalex.org/I5343935","display_name":"Guilin University of Electronic Technology","ror":"https://ror.org/05arjae42","country_code":"CN","type":"education","lineage":["https://openalex.org/I5343935"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liang Chang","raw_affiliation_strings":["School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin, China","School of Computer Science and lnformation Security, Guilin university of electronic technology, Guilin, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Information Security, Guilin University of Electronic Technology, Guilin, China","institution_ids":["https://openalex.org/I5343935"]},{"raw_affiliation_string":"School of Computer Science and lnformation Security, Guilin university of electronic technology, Guilin, China","institution_ids":["https://openalex.org/I5343935"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5015955860"],"corresponding_institution_ids":["https://openalex.org/I68986083"],"apc_list":null,"apc_paid":null,"fwci":12.918,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.97998305,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"22","issue":"2","first_page":"757","last_page":"768"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11396","display_name":"Artificial Intelligence in Healthcare","score":0.9799000024795532,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11396","display_name":"Artificial Intelligence in Healthcare","score":0.9799000024795532,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9567999839782715,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/granularity","display_name":"Granularity","score":0.8392350673675537},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.704714298248291},{"id":"https://openalex.org/keywords/dual","display_name":"Dual (grammatical number)","score":0.6349998712539673},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5539520978927612},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5106998085975647},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.39702004194259644},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.14370104670524597},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.0702117383480072},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06881216168403625}],"concepts":[{"id":"https://openalex.org/C177774035","wikidata":"https://www.wikidata.org/wiki/Q1246948","display_name":"Granularity","level":2,"score":0.8392350673675537},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.704714298248291},{"id":"https://openalex.org/C2780980858","wikidata":"https://www.wikidata.org/wiki/Q110022","display_name":"Dual (grammatical number)","level":2,"score":0.6349998712539673},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5539520978927612},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5106998085975647},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.39702004194259644},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.14370104670524597},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0702117383480072},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06881216168403625},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbbio.2025.3536100","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3536100","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40811396","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40811396","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4054276619","display_name":null,"funder_award_id":"62441701","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4762191740","display_name":null,"funder_award_id":"62276073","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8327241554","display_name":null,"funder_award_id":"U22A2099","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W1529287480","https://openalex.org/W1984789788","https://openalex.org/W2054674225","https://openalex.org/W2084168100","https://openalex.org/W2103017472","https://openalex.org/W2105813018","https://openalex.org/W2141222510","https://openalex.org/W2143076797","https://openalex.org/W2584855799","https://openalex.org/W2604314403","https://openalex.org/W2792962096","https://openalex.org/W2809389329","https://openalex.org/W2889454530","https://openalex.org/W2983166786","https://openalex.org/W3043552482","https://openalex.org/W3092613928","https://openalex.org/W3094605801","https://openalex.org/W3096655658","https://openalex.org/W3112600195","https://openalex.org/W3145450063","https://openalex.org/W3161787125","https://openalex.org/W3192705825","https://openalex.org/W3209731954","https://openalex.org/W3209810427","https://openalex.org/W3211778832","https://openalex.org/W4207008429","https://openalex.org/W4220909642","https://openalex.org/W4224983022","https://openalex.org/W4288433418","https://openalex.org/W4298299405","https://openalex.org/W6608056421","https://openalex.org/W6631190155","https://openalex.org/W6636975626","https://openalex.org/W6677712588","https://openalex.org/W6755573351","https://openalex.org/W6766978945","https://openalex.org/W6777179611","https://openalex.org/W6780191644","https://openalex.org/W6784694379","https://openalex.org/W6810609158","https://openalex.org/W6850270101","https://openalex.org/W6853848324"],"related_works":["https://openalex.org/W2931688134","https://openalex.org/W2377919138","https://openalex.org/W2378857091","https://openalex.org/W103652678","https://openalex.org/W4226090359","https://openalex.org/W2059697060","https://openalex.org/W936373746","https://openalex.org/W2975817033","https://openalex.org/W4256502920","https://openalex.org/W3204019825"],"abstract_inverted_index":{"The":[0],"quantification":[1],"of":[2,13,63,112,123,133,141],"similarities":[3],"among":[4],"human":[5],"diseases":[6,124],"is":[7,132],"crucial":[8],"for":[9,87,96],"enhancing":[10],"our":[11],"understanding":[12],"disease":[14,21,36,48,64,71,97,142,164,172,183,195],"biology,":[15],"which":[16],"can":[17],"aid":[18],"in":[19],"improving":[20],"diagnosis,":[22],"prognosis":[23],"and":[24,26,69,129,153,170],"treatment,":[25],"drug":[27],"development.":[28],"Recently,":[29],"efforts":[30],"have":[31],"been":[32],"devoted":[33],"to":[34,54,60,108,118,137,162],"quantifying":[35],"similarity":[37,196],"by":[38,126],"integrating":[39],"multi-view":[40],"data":[41,49,72],"sources":[42],"from":[43],"disparate":[44],"biological":[45,66,114,158,168],"data.":[46,184],"However,":[47],"are":[50,73],"often":[51],"sparse":[52],"due":[53],"their":[55],"rarity":[56],"or":[57],"privacy,":[58],"leading":[59,136],"suboptimal":[61],"representation":[62,98,111,143],"when":[65],"entity":[67,159],"relationships":[68],"labeled":[70],"not":[74],"adequately":[75],"modeled.":[76],"To":[77],"address":[78],"this":[79,146],"challenge,":[80],"we":[81],"propose":[82],"DAISY":[83,100,189],"(Dual-grAnularity":[84],"contrastIve":[85],"learning":[86,94,106,148],"diSease":[88],"similaritY":[89],"prediction),":[90],"an":[91],"effective":[92],"deep":[93],"model":[95],"modeling.":[99],"leverages":[101],"a":[102,138,156,171],"novel":[103],"dual-granularity":[104],"contrastive":[105,147],"mechanism":[107,149],"enhance":[109],"the":[110,120,194],"diverse":[113],"entities.":[115],"Its":[116],"ability":[117],"enable":[119],"collaborative":[121],"supervision":[122],"represented":[125],"both":[127],"homogeneous":[128],"heterogeneous":[130],"information":[131],"great":[134],"significance,":[135],"high":[139],"level":[140],"learning.":[144],"Besides,":[145],"combines":[150],"two":[151],"independent":[152],"complementary":[154],"components:":[155],"hierarchical":[157],"relationship-aware":[160],"module":[161,175],"capture":[163],"features":[165],"on":[166,177,193],"other":[167],"entities,":[169],"association":[173],"capturing":[174],"based":[176],"signed":[178],"random":[179],"walk":[180],"with":[181],"precious":[182],"Experimental":[185],"results":[186],"demonstrate":[187],"that":[188],"achieves":[190],"outstanding":[191],"performance":[192],"prediction":[197],"problem.":[198]},"counts_by_year":[{"year":2025,"cited_by_count":4}],"updated_date":"2026-03-09T08:58:05.943551","created_date":"2025-10-10T00:00:00"}
