{"id":"https://openalex.org/W4406458497","doi":"https://doi.org/10.1109/tcbbio.2025.3527457","title":"Dual-Network Cross-Learning for Metabolite-Disease Association Prediction","display_name":"Dual-Network Cross-Learning for Metabolite-Disease Association Prediction","publication_year":2025,"publication_date":"2025-01-16","ids":{"openalex":"https://openalex.org/W4406458497","doi":"https://doi.org/10.1109/tcbbio.2025.3527457","pmid":"https://pubmed.ncbi.nlm.nih.gov/40811420"},"language":"en","primary_location":{"id":"doi:10.1109/tcbbio.2025.3527457","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3527457","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012164733","display_name":"Yanxin Chen","orcid":"https://orcid.org/0000-0003-1828-3574"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanxin Chen","raw_affiliation_strings":["Department of Information Science and Technology, Dalian Maritime University, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Science and Technology, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048969140","display_name":"Ning Qiao","orcid":"https://orcid.org/0000-0002-4809-5104"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiao Ning","raw_affiliation_strings":["Department of Information Science and Technology, Dalian Maritime University, Dalian, China"],"raw_orcid":"https://orcid.org/0000-0002-4809-5104","affiliations":[{"raw_affiliation_string":"Department of Information Science and Technology, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102777091","display_name":"Yitong Zhang","orcid":"https://orcid.org/0009-0008-2276-9896"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yitong Zhang","raw_affiliation_strings":["Department of Information Science and Technology, Dalian Maritime University, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Science and Technology, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100423958","display_name":"Hui Li","orcid":"https://orcid.org/0000-0003-1923-0669"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Li","raw_affiliation_strings":["Department of Information Science and Technology, Dalian Maritime University, Dalian, China"],"raw_orcid":"https://orcid.org/0000-0003-1923-0669","affiliations":[{"raw_affiliation_string":"Department of Information Science and Technology, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018071549","display_name":"Shikai Guo","orcid":"https://orcid.org/0000-0002-8554-6365"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shikai Guo","raw_affiliation_strings":["Department of Information Science and Technology, Dalian Maritime University, Dalian, China"],"raw_orcid":"https://orcid.org/0000-0002-8554-6365","affiliations":[{"raw_affiliation_string":"Department of Information Science and Technology, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.7279,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.81863226,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"22","issue":"2","first_page":"545","last_page":"556"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9714000225067139,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9696999788284302,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.7110620737075806},{"id":"https://openalex.org/keywords/dual","display_name":"Dual (grammatical number)","score":0.6077604293823242},{"id":"https://openalex.org/keywords/metabolite","display_name":"Metabolite","score":0.48506036400794983},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.46262431144714355},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4589390158653259},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4342021644115448},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3789040446281433},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.37459230422973633},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3021429181098938},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.2743156850337982},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23565524816513062},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.21788814663887024},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.06362795829772949}],"concepts":[{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.7110620737075806},{"id":"https://openalex.org/C2780980858","wikidata":"https://www.wikidata.org/wiki/Q110022","display_name":"Dual (grammatical number)","level":2,"score":0.6077604293823242},{"id":"https://openalex.org/C2777477808","wikidata":"https://www.wikidata.org/wiki/Q407595","display_name":"Metabolite","level":2,"score":0.48506036400794983},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.46262431144714355},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4589390158653259},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4342021644115448},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3789040446281433},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.37459230422973633},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3021429181098938},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.2743156850337982},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23565524816513062},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.21788814663887024},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.06362795829772949},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbbio.2025.3527457","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2025.3527457","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40811420","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40811420","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.5099999904632568}],"awards":[{"id":"https://openalex.org/G1523728219","display_name":null,"funder_award_id":"62302075","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W1761787460","https://openalex.org/W1856740762","https://openalex.org/W1982089070","https://openalex.org/W2007466714","https://openalex.org/W2009200566","https://openalex.org/W2036109267","https://openalex.org/W2048576077","https://openalex.org/W2067600563","https://openalex.org/W2069685969","https://openalex.org/W2080943203","https://openalex.org/W2090585135","https://openalex.org/W2121804688","https://openalex.org/W2217528856","https://openalex.org/W2230400342","https://openalex.org/W2339613973","https://openalex.org/W2438719646","https://openalex.org/W2729775538","https://openalex.org/W2750245257","https://openalex.org/W2796909069","https://openalex.org/W2919509228","https://openalex.org/W2927302367","https://openalex.org/W2950301364","https://openalex.org/W2974234438","https://openalex.org/W2981895524","https://openalex.org/W3000740657","https://openalex.org/W3005517003","https://openalex.org/W3043440374","https://openalex.org/W3092397780","https://openalex.org/W3135690269","https://openalex.org/W3152668380","https://openalex.org/W3160440282","https://openalex.org/W3195226391","https://openalex.org/W3200693180","https://openalex.org/W4220912642","https://openalex.org/W4236696376","https://openalex.org/W4285076853","https://openalex.org/W4309905381","https://openalex.org/W4311422829","https://openalex.org/W4312084649","https://openalex.org/W4319073140","https://openalex.org/W4323845881","https://openalex.org/W4324382277","https://openalex.org/W4379380529","https://openalex.org/W4384664737","https://openalex.org/W4387219439","https://openalex.org/W4389195947","https://openalex.org/W4389259617","https://openalex.org/W4389976949","https://openalex.org/W4390265265","https://openalex.org/W4390511354","https://openalex.org/W4390872292","https://openalex.org/W4390883939","https://openalex.org/W4393193615","https://openalex.org/W4394769396","https://openalex.org/W4396884767","https://openalex.org/W4399319394","https://openalex.org/W6604000454"],"related_works":["https://openalex.org/W2521903434","https://openalex.org/W1753739957","https://openalex.org/W2085913165","https://openalex.org/W2011282322","https://openalex.org/W2024044986","https://openalex.org/W2005550771","https://openalex.org/W323632276","https://openalex.org/W2418404479","https://openalex.org/W2078089453","https://openalex.org/W2016858531"],"abstract_inverted_index":{"In":[0],"recent":[1],"years,":[2],"increasing":[3],"evidence":[4],"has":[5],"demonstrated":[6],"a":[7,59,96,141],"close":[8],"association":[9,92,108,132,163],"between":[10,165],"metabolites":[11,69,149,166],"and":[12,24,45,49,70,117,150,167,189],"various":[13],"complex":[14],"human":[15],"diseases,":[16],"providing":[17],"valuable":[18],"insights":[19],"for":[20,75],"disease":[21,37,50],"diagnosis,":[22],"treatment,":[23],"prevention.":[25],"Although":[26],"deep":[27,65,146],"learning-based":[28],"approaches":[29],"have":[30],"achieved":[31],"certain":[32],"success":[33],"in":[34,41,173],"predicting":[35],"metabolic":[36,48],"associations,":[38],"challenges":[39],"remain":[40],"enriching":[42],"graph":[43,123],"information":[44],"effectively":[46],"integrating":[47],"features.":[51],"To":[52],"address":[53],"these":[54],"issues,":[55],"this":[56],"paper":[57],"proposes":[58],"model":[60,160],"named":[61],"DCMDA,":[62],"which":[63],"extracts":[64,103],"features":[66,104,153],"of":[67,81,148,187,197],"both":[68],"diseases":[71],"using":[72,122],"Dual-network":[73],"Cross-learning":[74],"Metabolite-Disease":[76],"Association":[77],"prediction.":[78],"DCMDA":[79,176],"consists":[80],"three":[82],"parts.":[83],"The":[84,99,126],"data":[85],"processing":[86],"module":[87,102,129],"integrates":[88],"similarity":[89],"networks":[90,93],"with":[91,135],"to":[94,157,161],"construct":[95],"heterogeneous":[97,120,137],"network.":[98],"feature":[100,127,134,139],"extraction":[101],"from":[105,118],"the":[106,112,119,131,136,159,181,193],"metabolite-disease":[107],"network":[109,121,138],"based":[110],"on":[111],"non-negative":[113],"matrix":[114,133],"factorization":[115],"method":[116],"autoencoder":[124],"techniques.":[125],"fusion":[128],"combines":[130],"through":[140],"Cross-Attention":[142],"mechanism,":[143],"thereby":[144],"obtaining":[145],"representations":[147],"diseases.":[151,168],"These":[152],"are":[154],"then":[155],"used":[156],"train":[158],"predict":[162],"scores":[164],"Experimental":[169],"results":[170],"demonstrate":[171],"that":[172],"5-fold":[174],"cross-validation,":[175],"achieves":[177],"an":[178,190],"area":[179,191],"under":[180,192],"receiver":[182],"operating":[183],"characteristic":[184],"curve":[185,195],"(AUC)":[186],"97.8%":[188],"precision-recall":[194],"(AUPR)":[196],"97.9%,":[198],"outperforming":[199],"state-of-the-art":[200],"prediction":[201],"methods.":[202]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
