{"id":"https://openalex.org/W4406047374","doi":"https://doi.org/10.1109/tcbbio.2024.3518515","title":"MHMDA: \u201cSimilarity-Association-Similarity\u201d Metapaths and Heterogeneous-Hyper Network Learning for MiRNA-Disease Association Prediction","display_name":"MHMDA: \u201cSimilarity-Association-Similarity\u201d Metapaths and Heterogeneous-Hyper Network Learning for MiRNA-Disease Association Prediction","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4406047374","doi":"https://doi.org/10.1109/tcbbio.2024.3518515","pmid":"https://pubmed.ncbi.nlm.nih.gov/40811218"},"language":"en","primary_location":{"id":"doi:10.1109/tcbbio.2024.3518515","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2024.3518515","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5119272083","display_name":"Ruijie Li","orcid":"https://orcid.org/0009-0009-1208-4399"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ruijie Li","raw_affiliation_strings":["Department of Information Science and Technology, Dalian Maritime University, Dalian, China","Department of Information Science and Technology, Dalian Maritime University, Dalian, P.R. China"],"raw_orcid":"https://orcid.org/0009-0009-1208-4399","affiliations":[{"raw_affiliation_string":"Department of Information Science and Technology, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]},{"raw_affiliation_string":"Department of Information Science and Technology, Dalian Maritime University, Dalian, P.R. China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048969140","display_name":"Ning Qiao","orcid":"https://orcid.org/0000-0002-4809-5104"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiao Ning","raw_affiliation_strings":["Department of Information Science and Technology, Dalian Maritime University, Dalian, China","Department of Information Science and Technology, Dalian Maritime University, Dalian, P.R. China"],"raw_orcid":"https://orcid.org/0000-0002-4809-5104","affiliations":[{"raw_affiliation_string":"Department of Information Science and Technology, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]},{"raw_affiliation_string":"Department of Information Science and Technology, Dalian Maritime University, Dalian, P.R. China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yaomiao Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I9224756","display_name":"Northeastern University","ror":"https://ror.org/03awzbc87","country_code":"CN","type":"education","lineage":["https://openalex.org/I9224756"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yaomiao Zhao","raw_affiliation_strings":["School of Computer Science and Engineering, Northeastern University, Shenyang, China","School of Computer Science and Engineering, Northeastern University, Shenyang, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Northeastern University, Shenyang, China","institution_ids":["https://openalex.org/I9224756"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Northeastern University, Shenyang, P.R. China","institution_ids":["https://openalex.org/I9224756"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018071549","display_name":"Shikai Guo","orcid":"https://orcid.org/0000-0002-8554-6365"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shikai Guo","raw_affiliation_strings":["Department of Information Science and Technology, Dalian Maritime University, Dalian, China","Department of Information Science and Technology, Dalian Maritime University, Dalian, P.R. China","The Dalian Key Laboratory of Artificial Intelligence, Dalian, P.R. China"],"raw_orcid":"https://orcid.org/0000-0002-8554-6365","affiliations":[{"raw_affiliation_string":"Department of Information Science and Technology, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]},{"raw_affiliation_string":"Department of Information Science and Technology, Dalian Maritime University, Dalian, P.R. China","institution_ids":["https://openalex.org/I43313876"]},{"raw_affiliation_string":"The Dalian Key Laboratory of Artificial Intelligence, Dalian, P.R. China","institution_ids":[]}]},{"author_position":"last","author":{"id":null,"display_name":"Hui Li","orcid":"https://orcid.org/0000-0003-1923-0669"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Li","raw_affiliation_strings":["Department of Information Science and Technology, Dalian Maritime University, Dalian, China","Department of Information Science and Technology, Dalian Maritime University, Dalian, P.R. China"],"raw_orcid":"https://orcid.org/0000-0003-1923-0669","affiliations":[{"raw_affiliation_string":"Department of Information Science and Technology, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]},{"raw_affiliation_string":"Department of Information Science and Technology, Dalian Maritime University, Dalian, P.R. China","institution_ids":["https://openalex.org/I43313876"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5119272083"],"corresponding_institution_ids":["https://openalex.org/I43313876"],"apc_list":null,"apc_paid":null,"fwci":1.6148,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.80629426,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"22","issue":"1","first_page":"203","last_page":"215"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.8187049627304077},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.7863882184028625},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5556820034980774},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4629908800125122},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4192155599594116},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40815603733062744},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26214948296546936},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.20906460285186768},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.1706237494945526},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.09106752276420593}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.8187049627304077},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.7863882184028625},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5556820034980774},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4629908800125122},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4192155599594116},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40815603733062744},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26214948296546936},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.20906460285186768},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.1706237494945526},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.09106752276420593},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbbio.2024.3518515","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2024.3518515","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40811218","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40811218","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1523728219","display_name":null,"funder_award_id":"62302075","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W2082400627","https://openalex.org/W2102938424","https://openalex.org/W2116341502","https://openalex.org/W2127535576","https://openalex.org/W2258129851","https://openalex.org/W2260144515","https://openalex.org/W2264436887","https://openalex.org/W2560198845","https://openalex.org/W2809363952","https://openalex.org/W2964951118","https://openalex.org/W3000082418","https://openalex.org/W3082620742","https://openalex.org/W3092486253","https://openalex.org/W3093996932","https://openalex.org/W3096831136","https://openalex.org/W3133275787","https://openalex.org/W3157330827","https://openalex.org/W3199695490","https://openalex.org/W3215531133","https://openalex.org/W4200542843","https://openalex.org/W4205736070","https://openalex.org/W4207038304","https://openalex.org/W4210548518","https://openalex.org/W4213320461","https://openalex.org/W4220859562","https://openalex.org/W4225402571","https://openalex.org/W4225752318","https://openalex.org/W4226276166","https://openalex.org/W4246271082","https://openalex.org/W4284686955","https://openalex.org/W4285803631","https://openalex.org/W4286717496","https://openalex.org/W4289642021","https://openalex.org/W4311823641","https://openalex.org/W4313424256","https://openalex.org/W4316494230","https://openalex.org/W4323974793","https://openalex.org/W4379768521","https://openalex.org/W4379878477","https://openalex.org/W4383711240","https://openalex.org/W4387570870","https://openalex.org/W4390910780","https://openalex.org/W4390970724","https://openalex.org/W4391005914","https://openalex.org/W4403215523","https://openalex.org/W6801581507","https://openalex.org/W6854455424"],"related_works":["https://openalex.org/W2352440174","https://openalex.org/W4309440960","https://openalex.org/W2062168445","https://openalex.org/W2348940229","https://openalex.org/W2363046693","https://openalex.org/W2389491697","https://openalex.org/W2375480909","https://openalex.org/W2353314428","https://openalex.org/W4301044699","https://openalex.org/W2067476155"],"abstract_inverted_index":{"In":[0,42,63,91,172],"recent":[1],"years,":[2],"microRNA":[3],"(miRNA)":[4],"has":[5,162],"been":[6],"recognized":[7],"as":[8],"crucial":[9],"in":[10,31,166,200],"the":[11,26,127,134,138,147,167,187],"progression":[12],"of":[13,39,129,143,151,156,169,189],"human":[14],"diseases.":[15,90],"However,":[16],"existing":[17],"computational":[18],"methods":[19],"for":[20,58],"identifying":[21],"miRNA-disease":[22,59,170,203],"associations":[23,142],"often":[24],"overlook":[25],"rich":[27],"association":[28,60,109,113,193,204],"information":[29,84,110,114],"contained":[30],"specific":[32,80],"long-distance":[33,81,130],"pathways":[34],"and":[35,52,89,100,111,117,140,149,178,184,195,198],"lack":[36],"effective":[37],"exploration":[38],"potential":[40,112,141,202],"associations.":[41],"this":[43],"study,":[44],"we":[45],"propose":[46],"a":[47,65,93],"biologically":[48],"interpretable":[49],"\"similarity-association-similarity\"":[50,66,120],"metapath":[51,121],"heterogeneous-hyper":[53],"network":[54,99,102],"(HeteroHyperNet)":[55],"learning":[56,69,95,128],"approach":[57,96],"prediction":[61,168],"(MHMDA).":[62],"MHMDA,":[64],"multi-hop":[67],"metapaths":[68],"method":[70],"based":[71],"on":[72,182,191],"hierarchical":[73,123],"attention":[74,124],"perception":[75],"is":[76,103],"proposed":[77],"to":[78,105],"explore":[79],"associated":[82,87],"pathway":[83],"connecting":[85],"potentially":[86],"miRNAs":[88],"addition,":[92,173],"HeteroHyperNet":[94,135],"integrating":[97],"heterogeneous":[98],"hyper":[101],"designed":[104],"progressively":[106],"learn":[107],"direct":[108],"between":[115],"miRNA":[116,183],"disease.":[118],"The":[119],"with":[122],"significantly":[125],"enhances":[126],"biological":[131],"associations,":[132],"while":[133],"comprehensively":[136],"learns":[137],"known":[139],"miRNA-disease,":[144],"greatly":[145],"improving":[146],"richness":[148],"accuracy":[150],"information.":[152],"A":[153],"large":[154],"number":[155],"experimental":[157],"results":[158],"show":[159],"that":[160],"MHMDA":[161,190],"demonstrated":[163],"excellent":[164],"performance":[165],"association.":[171],"cross":[174],"independent":[175],"dataset":[176],"experiment":[177,181],"cold":[179],"start":[180],"disease":[185],"prove":[186],"effectiveness":[188],"sparse":[192],"points,":[194],"its":[196],"stability":[197],"reliability":[199],"predicting":[201],"are":[205],"further":[206],"confirmed.":[207]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-05-05T08:41:31.759640","created_date":"2025-10-10T00:00:00"}
