{"id":"https://openalex.org/W4406047202","doi":"https://doi.org/10.1109/tcbbio.2024.3499732","title":"MTGCL: Multi-Task Graph Contrastive Learning for Identifying Cancer Driver Genes From Multi-Omics Data","display_name":"MTGCL: Multi-Task Graph Contrastive Learning for Identifying Cancer Driver Genes From Multi-Omics Data","publication_year":2025,"publication_date":"2025-01-01","ids":{"openalex":"https://openalex.org/W4406047202","doi":"https://doi.org/10.1109/tcbbio.2024.3499732","pmid":"https://pubmed.ncbi.nlm.nih.gov/40811219"},"language":"en","primary_location":{"id":"doi:10.1109/tcbbio.2024.3499732","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2024.3499732","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104272835","display_name":"Ming Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming-Yu Xie","raw_affiliation_strings":["Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xi&#x2019;an, China","Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xi&#x2019;an, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xian, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061712236","display_name":"Shao\u2010Wu Zhang","orcid":"https://orcid.org/0000-0003-1305-7447"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shao-Wu Zhang","raw_affiliation_strings":["Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xi&#x2019;an, China","Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xian, China"],"raw_orcid":"https://orcid.org/0000-0003-1305-7447","affiliations":[{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xi&#x2019;an, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xian, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100378780","display_name":"Tong Zhang","orcid":"https://orcid.org/0000-0002-2909-5854"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tong Zhang","raw_affiliation_strings":["Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xi&#x2019;an, China","Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xi&#x2019;an, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xian, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050422997","display_name":"Yan Li","orcid":"https://orcid.org/0000-0001-7491-759X"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Li","raw_affiliation_strings":["Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xi&#x2019;an, China","Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xi&#x2019;an, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Information Fusion Technology of Ministry of Education, College of Automation, Northwestern Polytechnical University, Xian, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030261783","display_name":"Xiaodong Cui","orcid":"https://orcid.org/0000-0002-4762-6161"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaodong Cui","raw_affiliation_strings":["School of Marine Science and Technology, Northwestern Polytechnical University, Xi&#x2019;an, China","School of Marine Science and Technology, Northwestern Polytechnical University, Xian, China"],"raw_orcid":"https://orcid.org/0000-0002-4762-6161","affiliations":[{"raw_affiliation_string":"School of Marine Science and Technology, Northwestern Polytechnical University, Xi&#x2019;an, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Marine Science and Technology, Northwestern Polytechnical University, Xian, China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I17145004"],"apc_list":null,"apc_paid":null,"fwci":1.4604,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.78807032,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"22","issue":"1","first_page":"160","last_page":"170"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.6240559220314026},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5106983780860901},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4581507742404938},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4462258219718933},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.43008869886398315},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4297305941581726},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3217398524284363},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29493555426597595},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17601168155670166},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10867789387702942},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.08709371089935303}],"concepts":[{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.6240559220314026},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5106983780860901},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4581507742404938},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4462258219718933},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.43008869886398315},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4297305941581726},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3217398524284363},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29493555426597595},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17601168155670166},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10867789387702942},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.08709371089935303},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbbio.2024.3499732","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbbio.2024.3499732","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40811219","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40811219","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6045519203","display_name":null,"funder_award_id":"62003273","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7738526008","display_name":null,"funder_award_id":"62473312","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8507676316","display_name":null,"funder_award_id":"62173271","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":64,"referenced_works":["https://openalex.org/W1781854005","https://openalex.org/W1880949099","https://openalex.org/W1987908519","https://openalex.org/W2009720434","https://openalex.org/W2017138237","https://openalex.org/W2042160423","https://openalex.org/W2044433401","https://openalex.org/W2056782561","https://openalex.org/W2058539819","https://openalex.org/W2088891952","https://openalex.org/W2094122486","https://openalex.org/W2118527670","https://openalex.org/W2149082178","https://openalex.org/W2152061559","https://openalex.org/W2152176732","https://openalex.org/W2154851992","https://openalex.org/W2158485828","https://openalex.org/W2204695746","https://openalex.org/W2557187647","https://openalex.org/W2558715006","https://openalex.org/W2741508285","https://openalex.org/W2796408191","https://openalex.org/W2891796218","https://openalex.org/W2900569176","https://openalex.org/W2946657092","https://openalex.org/W2949066452","https://openalex.org/W2949492942","https://openalex.org/W2951560185","https://openalex.org/W2964015378","https://openalex.org/W2964321699","https://openalex.org/W2976852018","https://openalex.org/W2989260018","https://openalex.org/W2989676989","https://openalex.org/W3027286012","https://openalex.org/W3033039844","https://openalex.org/W3104097132","https://openalex.org/W3121087702","https://openalex.org/W3156270925","https://openalex.org/W3160381762","https://openalex.org/W3169622143","https://openalex.org/W3206417123","https://openalex.org/W4225974550","https://openalex.org/W4282975557","https://openalex.org/W4285010495","https://openalex.org/W4291123540","https://openalex.org/W4297733535","https://openalex.org/W4365460342","https://openalex.org/W4366602739","https://openalex.org/W4384820966","https://openalex.org/W4385687011","https://openalex.org/W4390604335","https://openalex.org/W4391751791","https://openalex.org/W4392607741","https://openalex.org/W4392796768","https://openalex.org/W4393972734","https://openalex.org/W4394862809","https://openalex.org/W4394894270","https://openalex.org/W6726873649","https://openalex.org/W6745537798","https://openalex.org/W6755573351","https://openalex.org/W6776700526","https://openalex.org/W6779940601","https://openalex.org/W6784694379","https://openalex.org/W6790859549"],"related_works":["https://openalex.org/W177137871","https://openalex.org/W4292302930","https://openalex.org/W4386960635","https://openalex.org/W2594649246","https://openalex.org/W2924366642","https://openalex.org/W3184567430","https://openalex.org/W4286491824","https://openalex.org/W2955498781","https://openalex.org/W4399390205","https://openalex.org/W3195112886"],"abstract_inverted_index":{"Identification":[0],"of":[1,12,18,52,76,93,130,134,143,150,166,175,189],"cancer":[2,22,77,94,196],"driver":[3,23,78,95,135,191],"genes":[4,192],"is":[5,116],"crucial":[6],"for":[7,73,193],"understanding":[8],"the":[9,16,41,55,74,91,128,131,164,173,187],"molecular":[10],"mechanisms":[11],"cancer.":[13],"To":[14],"address":[15],"limitations":[17],"graph":[19,84,101,112],"convolutional":[20,33,85],"networks-based":[21],"gene":[24,96,136],"identification":[25,75,97,137],"methods,":[26],"including":[27],"biased":[28],"prediction":[29],"results":[30,156],"caused":[31],"by":[32,98,138],"layer":[34,86],"structures":[35],"that":[36],"focus":[37],"more":[38],"on":[39,157],"either":[40],"structural":[42],"characteristics":[43],"(e.g.,":[44,49],"degree)":[45],"or":[46],"biological":[47],"features":[48,107,174],"mutation":[50,177,182],"frequency)":[51],"nodes":[53,145,152],"in":[54],"network,":[56],"as":[57,59,118],"well":[58],"sparse":[60],"supervisory":[61],"information,":[62,108],"we":[63,170],"propose":[64],"a":[65,82,110,119,122,140,147],"method":[66],"called":[67],"Multi-Task":[68],"Graph":[69],"Contrastive":[70],"Learning":[71],"(MTGCL)":[72],"genes.":[79],"MTGCL":[80],"designs":[81],"new":[83],"structure":[87,102],"which":[88],"can":[89,184],"improve":[90,186],"performance":[92,129,188],"effectively":[99,185],"integrating":[100],"topology":[103],"information":[104],"and":[105,146,159],"node":[106],"while":[109],"semi-supervised":[111],"contrastive":[113],"learning":[114,124],"task":[115,133],"presented":[117],"regularizer":[120],"within":[121],"multi-task":[123],"paradigm":[125],"to":[126],"enhance":[127],"main":[132],"utilizing":[139],"small":[141],"portion":[142],"labeled":[144],"large":[148],"amount":[149],"unlabeled":[151],"information.":[153],"The":[154],"experimental":[155],"pan-cancer":[158],"some":[160,194],"specific":[161,195],"cancers":[162],"demonstrate":[163],"effectiveness":[165],"MTGCL.":[167],"In":[168],"addition,":[169],"also":[171],"find":[172],"different":[176],"types":[178],"derived":[179],"from":[180],"somatic":[181],"data":[183],"identifying":[190],"types.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
