{"id":"https://openalex.org/W4403826527","doi":"https://doi.org/10.1109/tcbb.2024.3486911","title":"ESGC-MDA: Identifying miRNA-Disease Associations Using Enhanced Simple Graph Convolutional Networks","display_name":"ESGC-MDA: Identifying miRNA-Disease Associations Using Enhanced Simple Graph Convolutional Networks","publication_year":2024,"publication_date":"2024-10-28","ids":{"openalex":"https://openalex.org/W4403826527","doi":"https://doi.org/10.1109/tcbb.2024.3486911","pmid":"https://pubmed.ncbi.nlm.nih.gov/39466855"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2024.3486911","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2024.3486911","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036241949","display_name":"Xuehua Bi","orcid":"https://orcid.org/0009-0004-4861-1588"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xuehua Bi","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, Hunan, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081515918","display_name":"Chunyang Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210086551","display_name":"Academic Degrees & Graduate Education","ror":"https://ror.org/002e3sm06","country_code":"CN","type":"education","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210086551","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunyang Jiang","raw_affiliation_strings":["School of Computer Science and Technology, Xinjiang University, Urumqi, China","School of Computer Science and Technology, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xinjiang University, Urumqi, China","institution_ids":["https://openalex.org/I96908189"]},{"raw_affiliation_string":"School of Computer Science and Technology, China","institution_ids":["https://openalex.org/I4210086551"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100613014","display_name":"Cheng Yan","orcid":"https://orcid.org/0000-0002-5021-6841"},"institutions":[{"id":"https://openalex.org/I14992734","display_name":"Hunan University of Traditional Chinese Medicine","ror":"https://ror.org/05qfq0x09","country_code":"CN","type":"education","lineage":["https://openalex.org/I14992734"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cheng Yan","raw_affiliation_strings":["School of Informatics, Hunan University of Chinese Medicine, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Hunan University of Chinese Medicine, Changsha, China","institution_ids":["https://openalex.org/I14992734"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066909470","display_name":"Kai Zhao","orcid":"https://orcid.org/0000-0002-5448-9919"},"institutions":[{"id":"https://openalex.org/I4210086551","display_name":"Academic Degrees & Graduate Education","ror":"https://ror.org/002e3sm06","country_code":"CN","type":"education","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210086551","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Zhao","raw_affiliation_strings":["School of Computer Science and Technology, Xinjiang University, Urumqi, China","School of Computer Science and Technology, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Xinjiang University, Urumqi, China","institution_ids":["https://openalex.org/I96908189"]},{"raw_affiliation_string":"School of Computer Science and Technology, China","institution_ids":["https://openalex.org/I4210086551"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Linlin Zhang","orcid":"https://orcid.org/0009-0001-6445-3450"},"institutions":[{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Linlin Zhang","raw_affiliation_strings":["School of Software, Xinjiang University, Urumqi, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Xinjiang University, Urumqi, China","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100438360","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0003-1516-0480"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, Hunan, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5036241949"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":null,"apc_paid":null,"fwci":0.5589,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.69044206,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"22","issue":"2","first_page":"422","last_page":"432"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6193510293960571},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.6090814471244812},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5612582564353943},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42335045337677},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3429812788963318},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1671505570411682}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6193510293960571},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.6090814471244812},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5612582564353943},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42335045337677},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3429812788963318},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1671505570411682},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2024.3486911","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2024.3486911","pdf_url":null,"source":{"id":"https://openalex.org/S5407042751","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"2998-4165","issn":["2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39466855","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39466855","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2398480082","display_name":null,"funder_award_id":"12061071","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3938714024","display_name":null,"funder_award_id":"2022D01C427","funder_id":"https://openalex.org/F4320311028","funder_display_name":"Natural Science Foundation of Xinjiang Province"},{"id":"https://openalex.org/G539260901","display_name":null,"funder_award_id":"61962050","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7191140124","display_name":null,"funder_award_id":"2020D01C028","funder_id":"https://openalex.org/F4320311028","funder_display_name":"Natural Science Foundation of Xinjiang Province"},{"id":"https://openalex.org/G7523020803","display_name":null,"funder_award_id":"2022JJ30428","funder_id":"https://openalex.org/F4320322866","funder_display_name":"Natural Science Foundation of Hainan Province"},{"id":"https://openalex.org/G8815650053","display_name":null,"funder_award_id":"2022D01C429","funder_id":"https://openalex.org/F4320311028","funder_display_name":"Natural Science Foundation of Xinjiang Province"}],"funders":[{"id":"https://openalex.org/F4320311028","display_name":"Natural Science Foundation of Xinjiang Province","ror":null},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322866","display_name":"Natural Science Foundation of Hainan Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W1436642346","https://openalex.org/W1983809646","https://openalex.org/W2126619650","https://openalex.org/W2129158737","https://openalex.org/W2132694427","https://openalex.org/W2142937131","https://openalex.org/W2145361279","https://openalex.org/W2410390867","https://openalex.org/W2601934706","https://openalex.org/W2765950793","https://openalex.org/W2781702232","https://openalex.org/W2898440040","https://openalex.org/W2936738922","https://openalex.org/W3005051378","https://openalex.org/W3105938835","https://openalex.org/W3136759586","https://openalex.org/W3152893301","https://openalex.org/W3158143432","https://openalex.org/W3185009863","https://openalex.org/W3203052640","https://openalex.org/W4200043367","https://openalex.org/W4205736070","https://openalex.org/W4206658021","https://openalex.org/W4207038304","https://openalex.org/W4214593010","https://openalex.org/W4224275167","https://openalex.org/W4225402571","https://openalex.org/W4225752318","https://openalex.org/W4245959283","https://openalex.org/W4246271082","https://openalex.org/W4281553978","https://openalex.org/W4283785052","https://openalex.org/W4294376371","https://openalex.org/W4295241431","https://openalex.org/W4313423934","https://openalex.org/W4316038090","https://openalex.org/W4317622208","https://openalex.org/W4319764839","https://openalex.org/W4320857183","https://openalex.org/W4323974793","https://openalex.org/W4366684923","https://openalex.org/W4382239899","https://openalex.org/W4385157000","https://openalex.org/W4391005914","https://openalex.org/W4391853713","https://openalex.org/W4393068279","https://openalex.org/W4394735448","https://openalex.org/W4394853685","https://openalex.org/W4395030761","https://openalex.org/W4400408032","https://openalex.org/W6603694148","https://openalex.org/W6636915900","https://openalex.org/W6674330103","https://openalex.org/W6752110883","https://openalex.org/W6760001035","https://openalex.org/W6771932116","https://openalex.org/W6784998633","https://openalex.org/W6810236445"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W1585007175","https://openalex.org/W2382521049","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2144385241","https://openalex.org/W2358668433","https://openalex.org/W4396701345"],"abstract_inverted_index":{"MiRNAs":[0],"play":[1],"an":[2,77],"important":[3],"role":[4],"in":[5,117],"the":[6,40,105,118,131,151,202],"occurrence":[7],"and":[8,22,42,96,110,138,169,175,179,196],"development":[9],"of":[10,108,154,204],"human":[11],"disease.":[12],"Identifying":[13],"potential":[14,35],"miRNA-disease":[15,36,58,85,155],"associations":[16,37],"is":[17,26],"valuable":[18],"for":[19,33,57,94,191],"disease":[20,111],"diagnosis":[21],"treatment.":[23],"Therefore,":[24],"it":[25],"urgent":[27],"to":[28,38,83,129,142],"develop":[29],"efficient":[30],"computational":[31],"methods":[32],"predicting":[34],"reduce":[39],"cost":[41],"time":[43],"associated":[44],"with":[45],"biological":[46],"wet":[47],"experiments.":[48],"In":[49,66],"addition,":[50],"high-quality":[51],"feature":[52,106,136],"representation":[53],"remains":[54],"a":[55,71,90,159],"challenge":[56],"association":[59],"prediction":[60,152],"using":[61,139,158],"graph":[62,93],"neural":[63,162],"network":[64,163],"methods.":[65,187],"this":[67],"paper,":[68],"we":[69,103,149],"propose":[70],"method":[72],"named":[73],"ESGC-MDA,":[74],"which":[75,122],"employs":[76],"enhanced":[78],"Simple":[79],"Graph":[80],"Convolution":[81],"Network":[82],"identify":[84],"associations.":[86],"We":[87,165],"first":[88],"construct":[89],"bipartite":[91],"attributed":[92],"miRNAs":[95],"diseases":[97],"by":[98,113,157],"computing":[99],"multi-source":[100],"similarity.":[101],"Then,":[102],"enhance":[104],"representations":[107],"miRNA":[109],"nodes":[112],"applying":[114],"two":[115],"strategies":[116],"simple":[119],"convolution":[120],"network,":[121],"include":[123],"randomly":[124],"dropping":[125],"messages":[126],"during":[127],"propagation":[128],"ensure":[130],"model":[132],"learns":[133],"more":[134],"reliable":[135],"representations,":[137],"adaptive":[140],"weighting":[141],"aggregate":[143],"features":[144],"from":[145],"different":[146],"layers.":[147],"Finally,":[148],"calculate":[150],"scores":[153],"pairs":[156],"fully":[160],"connected":[161],"decoder.":[164],"conduct":[166],"5-fold":[167],"cross-validation":[168,171],"10-fold":[170],"on":[172],"HDMM":[173],"v2.0":[174],"HMDD":[176],"v3.2,":[177],"respectively,":[178],"ESGC-MDA":[180],"achieves":[181],"better":[182],"performance":[183],"than":[184],"state-of-the-art":[185],"baseline":[186],"The":[188],"case":[189],"studies":[190],"cardiovascular":[192],"disease,":[193],"lung":[194],"cancer":[195,198],"colon":[197],"also":[199],"further":[200],"confirm":[201],"effectiveness":[203],"ESGC-MDA.":[205]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
