{"id":"https://openalex.org/W4403277536","doi":"https://doi.org/10.1109/tcbb.2024.3476619","title":"Orientation Determination of Cryo-EM Projection Images Using Reliable Common Lines and Spherical Embeddings","display_name":"Orientation Determination of Cryo-EM Projection Images Using Reliable Common Lines and Spherical Embeddings","publication_year":2024,"publication_date":"2024-10-09","ids":{"openalex":"https://openalex.org/W4403277536","doi":"https://doi.org/10.1109/tcbb.2024.3476619","pmid":"https://pubmed.ncbi.nlm.nih.gov/39383071"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2024.3476619","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2024.3476619","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017892992","display_name":"Xiangwen Wang","orcid":"https://orcid.org/0000-0003-2201-5695"},"institutions":[{"id":"https://openalex.org/I68986083","display_name":"Northwest Normal University","ror":"https://ror.org/00gx3j908","country_code":"CN","type":"education","lineage":["https://openalex.org/I68986083"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangwen Wang","raw_affiliation_strings":["College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China"],"raw_orcid":"https://orcid.org/0000-0003-2201-5695","affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China","institution_ids":["https://openalex.org/I68986083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034204004","display_name":"Qiaoying Jin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124531","display_name":"Lanzhou University Second Hospital","ror":"https://ror.org/02erhaz63","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210124531"]},{"id":"https://openalex.org/I76214153","display_name":"Lanzhou University","ror":"https://ror.org/01mkqqe32","country_code":"CN","type":"education","lineage":["https://openalex.org/I76214153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiaoying Jin","raw_affiliation_strings":["Cuiying Biomedical Research Center, The Second Hospital and Clinical Medical School, Lanzhou University, Lanzhou, China","Cuiying Biomedical Research Center, The Second Hospital &amp; Clinical Medical School, Lanzhou University, Lanzhou, China"],"raw_orcid":"https://orcid.org/0009-0003-1329-0334","affiliations":[{"raw_affiliation_string":"Cuiying Biomedical Research Center, The Second Hospital and Clinical Medical School, Lanzhou University, Lanzhou, China","institution_ids":["https://openalex.org/I4210124531","https://openalex.org/I76214153"]},{"raw_affiliation_string":"Cuiying Biomedical Research Center, The Second Hospital &amp; Clinical Medical School, Lanzhou University, Lanzhou, China","institution_ids":["https://openalex.org/I76214153"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Li Zou","orcid":"https://orcid.org/0009-0003-2161-6402"},"institutions":[{"id":"https://openalex.org/I4210105580","display_name":"Gansu Meteorological Bureau","ror":"https://ror.org/01e99ef13","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210105580"]},{"id":"https://openalex.org/I76214153","display_name":"Lanzhou University","ror":"https://ror.org/01mkqqe32","country_code":"CN","type":"education","lineage":["https://openalex.org/I76214153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Zou","raw_affiliation_strings":["Gansu Provincial Meteorological Information and Technical Support and Equipment Center, Gansu Meteorological Bureau, Lanzhou, China","School of Information Science and Engineering, Lanzhou University, Lanzhou, China"],"raw_orcid":"https://orcid.org/0009-0003-2161-6402","affiliations":[{"raw_affiliation_string":"Gansu Provincial Meteorological Information and Technical Support and Equipment Center, Gansu Meteorological Bureau, Lanzhou, China","institution_ids":["https://openalex.org/I4210105580"]},{"raw_affiliation_string":"School of Information Science and Engineering, Lanzhou University, Lanzhou, China","institution_ids":["https://openalex.org/I76214153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078704613","display_name":"Xianghong Lin","orcid":"https://orcid.org/0000-0002-7932-0546"},"institutions":[{"id":"https://openalex.org/I68986083","display_name":"Northwest Normal University","ror":"https://ror.org/00gx3j908","country_code":"CN","type":"education","lineage":["https://openalex.org/I68986083"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianghong Lin","raw_affiliation_strings":["College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China"],"raw_orcid":"https://orcid.org/0000-0002-7932-0546","affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Northwest Normal University, Lanzhou, China","institution_ids":["https://openalex.org/I68986083"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082133960","display_name":"Yonggang Lu","orcid":"https://orcid.org/0000-0001-8926-2039"},"institutions":[{"id":"https://openalex.org/I76214153","display_name":"Lanzhou University","ror":"https://ror.org/01mkqqe32","country_code":"CN","type":"education","lineage":["https://openalex.org/I76214153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yonggang Lu","raw_affiliation_strings":["School of Information Science and Engineering, Lanzhou University, Lanzhou, China"],"raw_orcid":"https://orcid.org/0000-0001-8926-2039","affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, Lanzhou University, Lanzhou, China","institution_ids":["https://openalex.org/I76214153"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.0357,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.87057999,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"21","issue":"6","first_page":"2496","last_page":"2509"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11383","display_name":"Advanced Antenna and Metasurface Technologies","score":0.9035000205039978,"subfield":{"id":"https://openalex.org/subfields/2202","display_name":"Aerospace Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11383","display_name":"Advanced Antenna and Metasurface Technologies","score":0.9035000205039978,"subfield":{"id":"https://openalex.org/subfields/2202","display_name":"Aerospace Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/orientation","display_name":"Orientation (vector space)","score":0.753567636013031},{"id":"https://openalex.org/keywords/projection","display_name":"Projection (relational algebra)","score":0.6739934682846069},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.4302539527416229},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4004143476486206},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.36914852261543274},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2785572409629822},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.26395073533058167},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.15530741214752197}],"concepts":[{"id":"https://openalex.org/C16345878","wikidata":"https://www.wikidata.org/wiki/Q107472979","display_name":"Orientation (vector space)","level":2,"score":0.753567636013031},{"id":"https://openalex.org/C57493831","wikidata":"https://www.wikidata.org/wiki/Q3134666","display_name":"Projection (relational algebra)","level":2,"score":0.6739934682846069},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.4302539527416229},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4004143476486206},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.36914852261543274},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2785572409629822},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.26395073533058167},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.15530741214752197}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020285","descriptor_name":"Cryoelectron Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2024.3476619","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2024.3476619","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39383071","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39383071","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1427348793","display_name":null,"funder_award_id":"23JRRA1577","funder_id":"https://openalex.org/F4320334993","funder_display_name":"Key Science and Technology Foundation of Gansu Province"},{"id":"https://openalex.org/G2559347365","display_name":null,"funder_award_id":"23JRRA0959","funder_id":"https://openalex.org/F4320322880","funder_display_name":"Natural Science Foundation of Gansu Province"},{"id":"https://openalex.org/G8070999581","display_name":null,"funder_award_id":"24JRRA127","funder_id":"https://openalex.org/F4320322880","funder_display_name":"Natural Science Foundation of Gansu Province"}],"funders":[{"id":"https://openalex.org/F4320322880","display_name":"Natural Science Foundation of Gansu Province","ror":null},{"id":"https://openalex.org/F4320334993","display_name":"Key Science and Technology Foundation of Gansu Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W1967489089","https://openalex.org/W1999418377","https://openalex.org/W2040957249","https://openalex.org/W2058716938","https://openalex.org/W2072951627","https://openalex.org/W2105367101","https://openalex.org/W2138390185","https://openalex.org/W2332717117","https://openalex.org/W2339400336","https://openalex.org/W2569402566","https://openalex.org/W2587625522","https://openalex.org/W2734356283","https://openalex.org/W2756916783","https://openalex.org/W2762284348","https://openalex.org/W2785740315","https://openalex.org/W2884929646","https://openalex.org/W2917749467","https://openalex.org/W2918202014","https://openalex.org/W2944108200","https://openalex.org/W2963927955","https://openalex.org/W2973120756","https://openalex.org/W2996952348","https://openalex.org/W3009153763","https://openalex.org/W3009335299","https://openalex.org/W3023323852","https://openalex.org/W3025511956","https://openalex.org/W3083406432","https://openalex.org/W3093646295","https://openalex.org/W3093687613","https://openalex.org/W3094051077","https://openalex.org/W3096678867","https://openalex.org/W3105116104","https://openalex.org/W3119556445","https://openalex.org/W3121939440","https://openalex.org/W3138440399","https://openalex.org/W3202357172","https://openalex.org/W3206275591","https://openalex.org/W3213779066","https://openalex.org/W4220916482","https://openalex.org/W4224242375","https://openalex.org/W4283790249","https://openalex.org/W4299416517","https://openalex.org/W4307028269","https://openalex.org/W4307513428","https://openalex.org/W4363648891","https://openalex.org/W4375948752","https://openalex.org/W4377028475","https://openalex.org/W4379600338","https://openalex.org/W4382560350","https://openalex.org/W4385454156","https://openalex.org/W4386913014","https://openalex.org/W4387495022","https://openalex.org/W4387742932"],"related_works":["https://openalex.org/W2058170566","https://openalex.org/W2772917594","https://openalex.org/W2755342338","https://openalex.org/W2166024367","https://openalex.org/W3116076068","https://openalex.org/W2229312674","https://openalex.org/W2951359407","https://openalex.org/W2079911747","https://openalex.org/W1969923398","https://openalex.org/W2775347418"],"abstract_inverted_index":{"Three-dimensional":[0],"(3D)":[1],"reconstruction":[2],"in":[3,152,162,179],"single-particle":[4,180],"cryo-electron":[5],"microscopy":[6],"(cryo-EM)":[7],"is":[8,30,72,177],"a":[9,46,75],"critical":[10],"technique":[11,84],"for":[12],"recovering":[13],"and":[14,22,60,85,100,137,159],"studying":[15],"the":[16,27,33,50,64,89,97,112,121,124,145,154,174],"fine":[17],"3D":[18,165,182],"structure":[19],"of":[20,35,41,52,66,104,114,123,156],"proteins":[21],"other":[23],"biological":[24],"macromolecules,":[25],"where":[26],"primary":[28],"issue":[29],"to":[31,48,95],"determine":[32,49],"orientations":[34,51,113,155],"projection":[36,54,70,105,115,140,157],"images":[37,55,71,106,116,158],"with":[38],"high":[39],"levels":[40],"noise.":[42],"This":[43],"paper":[44],"proposes":[45],"method":[47,147,176],"cryo-EM":[53,139,181],"using":[56,74,128],"reliable":[57,90],"common":[58,67,91,169],"lines":[59,68,92],"spherical":[61,109,126],"embeddings.":[62,110],"First,":[63],"reliability":[65],"between":[69],"evaluated":[73],"weighted":[76],"voting":[77],"algorithm":[78],"based":[79],"on":[80,134],"an":[81,129],"iterative":[82],"improvement":[83],"binarized":[86],"weighting.":[87],"Then,":[88],"are":[93,117],"used":[94],"calculate":[96],"normal":[98],"vectors":[99,103],"local":[101],"-axis":[102],"after":[107],"two":[108,125],"Finally,":[111],"determined":[118],"by":[119],"aligning":[120],"results":[122,133],"embeddings":[127],"orthogonal":[130],"constraint.":[131],"Experimental":[132],"both":[135],"synthetic":[136],"real":[138],"image":[141],"datasets":[142],"demonstrate":[143],"that":[144,173],"proposed":[146,175],"can":[148],"achieve":[149],"higher":[150,160],"accuracy":[151],"estimating":[153],"resolution":[161],"reconstructing":[163],"preliminary":[164],"structures":[166],"than":[167],"some":[168],"line-based":[170],"methods,":[171],"indicating":[172],"effective":[178],"reconstruction.":[183]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
