{"id":"https://openalex.org/W4390938618","doi":"https://doi.org/10.1109/tcbb.2024.3355093","title":"LMGATCDA: Graph Neural Network With Labeling Trick for Predicting circRNA-Disease Associations","display_name":"LMGATCDA: Graph Neural Network With Labeling Trick for Predicting circRNA-Disease Associations","publication_year":2024,"publication_date":"2024-01-17","ids":{"openalex":"https://openalex.org/W4390938618","doi":"https://doi.org/10.1109/tcbb.2024.3355093","pmid":"https://pubmed.ncbi.nlm.nih.gov/38231821"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2024.3355093","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2024.3355093","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101736524","display_name":"Wenjing Wang","orcid":"https://orcid.org/0009-0005-6354-9441"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjing Wang","raw_affiliation_strings":["School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, Jiangsu, China"],"raw_orcid":"https://orcid.org/0009-0005-6354-9441","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, Jiangsu, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100454714","display_name":"Pengyong Han","orcid":null},"institutions":[{"id":"https://openalex.org/I198959115","display_name":"Changzhi Medical College","ror":"https://ror.org/0340wst14","country_code":"CN","type":"education","lineage":["https://openalex.org/I198959115"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pengyong Han","raw_affiliation_strings":["Central Lab, Changzhi Medical College, Xi&#x2019;an, Shanxi, China"],"raw_orcid":"https://orcid.org/0000-0002-0017-0785","affiliations":[{"raw_affiliation_string":"Central Lab, Changzhi Medical College, Xi&#x2019;an, Shanxi, China","institution_ids":["https://openalex.org/I198959115"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100734156","display_name":"Zhengwei Li","orcid":"https://orcid.org/0000-0003-1644-1006"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]},{"id":"https://openalex.org/I4210159676","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210159676"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengwei Li","raw_affiliation_strings":["School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, Jiangsu, China","School of Information Science and Engineering, Zaozhuang University, Zaozhuang, China"],"raw_orcid":"https://orcid.org/0000-0003-1644-1006","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, Jiangsu, China","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"School of Information Science and Engineering, Zaozhuang University, Zaozhuang, China","institution_ids":["https://openalex.org/I4210159676"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101948619","display_name":"Ru Nie","orcid":"https://orcid.org/0000-0003-4729-167X"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ru Nie","raw_affiliation_strings":["School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, Jiangsu, China"],"raw_orcid":"https://orcid.org/0000-0003-4729-167X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, Jiangsu, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101399548","display_name":"Kangwei Wang","orcid":"https://orcid.org/0009-0005-3176-4569"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kangwei Wang","raw_affiliation_strings":["School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, Jiangsu, China"],"raw_orcid":"https://orcid.org/0009-0005-3176-4569","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, Jiangsu, China","institution_ids":["https://openalex.org/I25757504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100436059","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0003-0184-307X"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]},{"id":"https://openalex.org/I4210165264","display_name":"Guangxi Academy of Sciences","ror":"https://ror.org/054x1kd82","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210165264"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Wang","raw_affiliation_strings":["School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, Jiangsu, China","Big Data and Intelligent Computing Research Center, Guangxi Academy of Science, Guangxi, China"],"raw_orcid":"https://orcid.org/0000-0003-0184-307X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, Jiangsu, China","institution_ids":["https://openalex.org/I25757504"]},{"raw_affiliation_string":"Big Data and Intelligent Computing Research Center, Guangxi Academy of Science, Guangxi, China","institution_ids":["https://openalex.org/I4210165264"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071656470","display_name":"Hongmei Liao","orcid":"https://orcid.org/0009-0005-5397-871X"},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongmei Liao","raw_affiliation_strings":["School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, Jiangsu, China"],"raw_orcid":"https://orcid.org/0009-0005-5397-871X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, Jiangsu, China","institution_ids":["https://openalex.org/I25757504"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.8,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.84240457,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"21","issue":"2","first_page":"289","last_page":"300"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5261744260787964},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4829256236553192},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4768344461917877},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4322904050350189},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.23012655973434448}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5261744260787964},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4829256236553192},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4768344461917877},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4322904050350189},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.23012655973434448}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2024.3355093","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2024.3355093","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:38231821","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38231821","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G4306865477","display_name":null,"funder_award_id":"ZR2022LZL003","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G6293588669","display_name":null,"funder_award_id":"20210302124588","funder_id":"https://openalex.org/F4320326179","funder_display_name":"Shanxi Province Science Foundation for Youths"}],"funders":[{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null},{"id":"https://openalex.org/F4320326179","display_name":"Shanxi Province Science Foundation for Youths","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W2024248021","https://openalex.org/W2029838682","https://openalex.org/W2031593782","https://openalex.org/W2054891772","https://openalex.org/W2058835062","https://openalex.org/W2332619026","https://openalex.org/W2344084644","https://openalex.org/W2616072553","https://openalex.org/W2737722001","https://openalex.org/W2800766678","https://openalex.org/W2802188318","https://openalex.org/W2807602500","https://openalex.org/W2884943532","https://openalex.org/W2898991725","https://openalex.org/W2899436082","https://openalex.org/W2906953716","https://openalex.org/W2957989634","https://openalex.org/W2980489722","https://openalex.org/W2981316968","https://openalex.org/W3004538479","https://openalex.org/W3006106792","https://openalex.org/W3013536544","https://openalex.org/W3020614442","https://openalex.org/W3026308742","https://openalex.org/W3036180357","https://openalex.org/W3082620742","https://openalex.org/W3092486253","https://openalex.org/W3094804494","https://openalex.org/W3094881119","https://openalex.org/W3096107118","https://openalex.org/W3120280121","https://openalex.org/W3127152040","https://openalex.org/W3134111154","https://openalex.org/W3135986653","https://openalex.org/W3148711710","https://openalex.org/W3153674502","https://openalex.org/W3175747759","https://openalex.org/W3190084302","https://openalex.org/W3192421672","https://openalex.org/W3193231898","https://openalex.org/W3202143517","https://openalex.org/W3202551657","https://openalex.org/W4200088778","https://openalex.org/W4200144569","https://openalex.org/W4207038304","https://openalex.org/W4210852391","https://openalex.org/W4283592141","https://openalex.org/W4283772644","https://openalex.org/W4295814154","https://openalex.org/W4322614756","https://openalex.org/W6730084236","https://openalex.org/W6738964360","https://openalex.org/W6748856961","https://openalex.org/W6803546774"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"Previous":[0],"studies":[1,176],"have":[2],"proven":[3],"that":[4,180],"circular":[5],"RNAs":[6],"(circRNAs)":[7],"are":[8,23,109,117,135],"inextricably":[9],"connected":[10,140],"to":[11,32,40,194],"the":[12,77,91,106,132,165,170,181],"etiology":[13],"and":[14,27,36,76,113,124,156],"pathophysiology":[15],"of":[16,90,162],"complicated":[17],"diseases.":[18],"Since":[19],"conventional":[20],"biological":[21],"research":[22,191],"frequently":[24],"small-scale,":[25],"expensive,":[26],"time-consuming,":[28],"it":[29],"is":[30],"essential":[31],"establish":[33],"an":[34,160],"efficient":[35],"reasonable":[37],"computation-based":[38],"method":[39],"identify":[41],"disease-related":[42],"circRNAs.":[43],"In":[44,63],"this":[45],"article,":[46],"we":[47],"proposed":[48],"a":[49,138],"novel":[50],"ensemble":[51],"model":[52,183],"for":[53,189],"predicting":[54],"probable":[55],"circRNA-disease":[56,187],"associations":[57,188],"based":[58],"on":[59,69,164],"multi-source":[60],"similarity":[61,83],"information(LMGATCDA).":[62],"particular,":[64],"LMGATCDA":[65,145,182],"first":[66],"incorporates":[67],"information":[68],"circRNA":[70],"functional":[71],"similarity,":[72,75],"disease":[73],"semantic":[74],"Gaussian":[78],"interaction":[79],"profile":[80],"(GIP)":[81],"kernel":[82],"as":[84,100,111],"explicit":[85],"features,":[86],"along":[87],"with":[88,159],"node-labeling":[89],"three-hop":[92],"subgraphs":[93],"extracted":[94,118],"from":[95,173],"each":[96],"linked":[97],"target":[98],"node":[99],"graph":[101,120,127],"structural":[102],"features.":[103],"After":[104],"that,":[105],"fused":[107],"features":[108,116],"used":[110],"input,":[112],"further":[114],"implied":[115],"by":[119],"sampling":[121],"aggregation":[122],"(GraphSAGE)":[123],"multi-hop":[125],"attention":[126],"neural":[128],"network":[129],"(MAGNA).":[130],"Finally,":[131],"prediction":[133],"scores":[134],"obtained":[136],"through":[137],"fully":[139],"layer.":[141],"With":[142],"five-fold":[143],"cross-validation,":[144],"demonstrated":[146],"excellent":[147],"competitiveness":[148],"against":[149],"gold":[150],"standard":[151],"data,":[152],"reaching":[153],"95.37%":[154],"accuracy":[155],"91.31%":[157],"recall":[158],"AUC":[161],"94.25%":[163],"circR2Disease":[166],"benchmark":[167],"dataset.":[168],"Collectively,":[169],"noteworthy":[171],"findings":[172],"these":[174],"case":[175],"support":[177],"our":[178],"conclusion":[179],"can":[184],"provide":[185],"reliable":[186],"clinical":[190],"while":[192],"helping":[193],"mitigate":[195],"experimental":[196],"uncertainties":[197],"in":[198],"wet-lab":[199],"investigations.":[200]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":8}],"updated_date":"2026-07-25T15:57:00.446498","created_date":"2025-10-10T00:00:00"}
