{"id":"https://openalex.org/W4377710512","doi":"https://doi.org/10.1109/tcbb.2023.3279019","title":"PointDE: Protein Docking Evaluation Using 3D Point Cloud Neural Network","display_name":"PointDE: Protein Docking Evaluation Using 3D Point Cloud Neural Network","publication_year":2023,"publication_date":"2023-05-23","ids":{"openalex":"https://openalex.org/W4377710512","doi":"https://doi.org/10.1109/tcbb.2023.3279019","pmid":"https://pubmed.ncbi.nlm.nih.gov/37220029"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2023.3279019","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2023.3279019","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055280429","display_name":"Z.X. Chen","orcid":"https://orcid.org/0000-0002-7654-4931"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zihao Chen","raw_affiliation_strings":["School of Informatics, the State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University of China, Xiamen, China","State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Informatics, Xiamen University of China, No. 422 Siming South Rd, Xiamen, China"],"affiliations":[{"raw_affiliation_string":"School of Informatics, the State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University of China, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Informatics, Xiamen University of China, No. 422 Siming South Rd, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100367554","display_name":"Nan Liu","orcid":"https://orcid.org/0000-0003-3610-4883"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Nan Liu","raw_affiliation_strings":["State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, Xiamen, China","State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, No. 422 Siming South Rd, Xiamen, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, No. 422 Siming South Rd, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047327093","display_name":"Yang Huang","orcid":"https://orcid.org/0000-0002-6458-6069"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Huang","raw_affiliation_strings":["State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, Xiamen, China","State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, No. 422 Siming South Rd, Xiamen, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, No. 422 Siming South Rd, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090466533","display_name":"Xiaoping Min","orcid":"https://orcid.org/0000-0002-0817-0878"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoping Min","raw_affiliation_strings":["School of Informatics, the State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University of China, Xiamen, China","State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Informatics, Xiamen University of China, No. 422 Siming South Rd, Xiamen, China"],"affiliations":[{"raw_affiliation_string":"School of Informatics, the State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Xiamen University of China, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Informatics, Xiamen University of China, No. 422 Siming South Rd, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027286013","display_name":"Xiangxiang Zeng","orcid":"https://orcid.org/0000-0001-6201-0114"},"institutions":[{"id":"https://openalex.org/I24407930","display_name":"Hunan University of Science and Engineering","ror":"https://ror.org/04ymz0q33","country_code":"CN","type":"education","lineage":["https://openalex.org/I24407930"]},{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangxiang Zeng","raw_affiliation_strings":["Department of Computer Science, Hunan University of China, Hunan, China","Department of Computer Science, Hunan University of China, No. 2 Lushan South Rd, Hunan, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Hunan University of China, Hunan, China","institution_ids":["https://openalex.org/I24407930","https://openalex.org/I16609230"]},{"raw_affiliation_string":"Department of Computer Science, Hunan University of China, No. 2 Lushan South Rd, Hunan, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009905256","display_name":"Shengxiang Ge","orcid":"https://orcid.org/0000-0002-7165-3004"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengxiang Ge","raw_affiliation_strings":["State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, Xiamen, China","State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, No. 422 Siming South Rd, Xiamen, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, No. 422 Siming South Rd, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100433188","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0002-6601-9180"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, Xiamen, China","State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, No. 422 Siming South Rd, Xiamen, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, No. 422 Siming South Rd, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078732636","display_name":"Ningshao Xia","orcid":"https://orcid.org/0000-0003-0179-5266"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ningshao Xia","raw_affiliation_strings":["State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, Xiamen, China","State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, No. 422 Siming South Rd, Xiamen, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, Collaborative Innovation Centers of Biological Products, School of Public Health, Xiamen University of China, No. 422 Siming South Rd, Xiamen, China","institution_ids":["https://openalex.org/I191208505"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5055280429"],"corresponding_institution_ids":["https://openalex.org/I191208505"],"apc_list":null,"apc_paid":null,"fwci":1.2724,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.7958738,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"20","issue":"5","first_page":"3128","last_page":"3138"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11124","display_name":"Protein purification and stability","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.7738255262374878},{"id":"https://openalex.org/keywords/point-cloud","display_name":"Point cloud","score":0.7460918426513672},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7067453265190125},{"id":"https://openalex.org/keywords/macromolecular-docking","display_name":"Macromolecular docking","score":0.5800651907920837},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.5599363446235657},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5549806952476501},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4615063965320587},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4407344162464142},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4086952209472656},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3344660997390747},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16010642051696777}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.7738255262374878},{"id":"https://openalex.org/C131979681","wikidata":"https://www.wikidata.org/wiki/Q1899648","display_name":"Point cloud","level":2,"score":0.7460918426513672},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7067453265190125},{"id":"https://openalex.org/C116887118","wikidata":"https://www.wikidata.org/wiki/Q836685","display_name":"Macromolecular docking","level":3,"score":0.5800651907920837},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.5599363446235657},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5549806952476501},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4615063965320587},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4407344162464142},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4086952209472656},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3344660997390747},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16010642051696777},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2023.3279019","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2023.3279019","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37220029","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37220029","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5570595420","display_name":null,"funder_award_id":"62272399","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W1724277458","https://openalex.org/W1907442748","https://openalex.org/W1990315216","https://openalex.org/W2000383223","https://openalex.org/W2005303195","https://openalex.org/W2007490029","https://openalex.org/W2024911966","https://openalex.org/W2045550557","https://openalex.org/W2054394841","https://openalex.org/W2095805667","https://openalex.org/W2098110345","https://openalex.org/W2100714283","https://openalex.org/W2108486693","https://openalex.org/W2111387452","https://openalex.org/W2124981562","https://openalex.org/W2128900650","https://openalex.org/W2129454543","https://openalex.org/W2133712572","https://openalex.org/W2140574901","https://openalex.org/W2144954642","https://openalex.org/W2145793759","https://openalex.org/W2153983456","https://openalex.org/W2155796229","https://openalex.org/W2157991822","https://openalex.org/W2170421654","https://openalex.org/W2187089797","https://openalex.org/W2470377678","https://openalex.org/W2508425869","https://openalex.org/W2510421160","https://openalex.org/W2560609797","https://openalex.org/W2588962857","https://openalex.org/W2767509030","https://openalex.org/W2898389621","https://openalex.org/W2912460249","https://openalex.org/W2915344963","https://openalex.org/W2940537888","https://openalex.org/W2962731536","https://openalex.org/W2963121255","https://openalex.org/W2979741494","https://openalex.org/W2980678340","https://openalex.org/W2990689232","https://openalex.org/W2992752586","https://openalex.org/W3164107346","https://openalex.org/W3177828909","https://openalex.org/W3185671814","https://openalex.org/W3195593976","https://openalex.org/W3212562354","https://openalex.org/W3216616254","https://openalex.org/W4221160819","https://openalex.org/W4285392187","https://openalex.org/W6739778489","https://openalex.org/W6763422710","https://openalex.org/W6810249204"],"related_works":["https://openalex.org/W2996908194","https://openalex.org/W2585040066","https://openalex.org/W2162380182","https://openalex.org/W3005126098","https://openalex.org/W2157273785","https://openalex.org/W3011103292","https://openalex.org/W1489925612","https://openalex.org/W3187431608","https://openalex.org/W1974422922","https://openalex.org/W4309353019"],"abstract_inverted_index":{"Protein-protein":[0,25],"interactions":[1],"(PPIs)":[2],"play":[3],"essential":[4],"roles":[5],"in":[6,124,142],"many":[7],"vital":[8],"movements":[9],"and":[10,82,96],"the":[11,21,32,35,45,72,76,90,93,98,102,110,119,147,157],"determination":[12],"of":[13,23,34,92,121,127,150,159],"protein":[14,69,103,128],"complex":[15],"structure":[16,33,70],"is":[17,27,39],"helpful":[18,155],"to":[19,30,43,71],"discover":[20],"mechanism":[22],"PPI.":[24],"docking":[26,56],"being":[28],"developed":[29,131],"model":[31],"protein.":[36],"However,":[37],"there":[38],"still":[40],"a":[41,55,83,132],"challenge":[42],"selecting":[44],"near-native":[46],"decoys":[47],"generated":[48,135],"by":[49,136],"protein-protein":[50],"docking.":[51],"Here,":[52],"we":[53,130],"propose":[54],"evaluation":[57],"method":[58,112,123],"using":[59,113],"3D":[60],"point":[61,73,78,94],"cloud":[62,79,95],"neural":[63],"network":[64,80],"named":[65],"PointDE.":[66],"PointDE":[67,87,108],"transforms":[68],"cloud.":[74],"Using":[75],"state-of-the-art":[77,111],"architecture":[81],"novel":[84],"grouping":[85],"mechanism,":[86],"can":[88],"capture":[89],"geometries":[91],"learn":[97],"interaction":[99],"information":[100],"from":[101],"interface.":[104],"On":[105],"public":[106],"datasets,":[107],"surpasses":[109],"deep":[114],"learning.":[115],"To":[116],"further":[117],"explore":[118],"ability":[120],"our":[122],"different":[125],"types":[126],"structures,":[129],"new":[133],"dataset":[134,145],"high-quality":[137],"antibody-antigen":[138,144],"complexes.":[139],"The":[140],"result":[141],"this":[143],"shows":[146],"strong":[148],"performance":[149],"PointDE,":[151],"which":[152],"will":[153],"be":[154],"for":[156],"understanding":[158],"PPI":[160],"mechanisms.":[161]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
