{"id":"https://openalex.org/W4376122068","doi":"https://doi.org/10.1109/tcbb.2023.3274587","title":"Low Rank Matrix Factorization Algorithm Based on Multi-Graph Regularization for Detecting Drug-Disease Association","display_name":"Low Rank Matrix Factorization Algorithm Based on Multi-Graph Regularization for Detecting Drug-Disease Association","publication_year":2023,"publication_date":"2023-05-10","ids":{"openalex":"https://openalex.org/W4376122068","doi":"https://doi.org/10.1109/tcbb.2023.3274587","pmid":"https://pubmed.ncbi.nlm.nih.gov/37159322"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2023.3274587","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2023.3274587","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018156666","display_name":"Chengwei Ai","orcid":"https://orcid.org/0000-0003-1314-660X"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengwei Ai","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, Hunan, China","School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University, Tianjin, China"],"raw_orcid":"https://orcid.org/0000-0003-1314-660X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University, Tianjin, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081832999","display_name":"Hongpeng Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I155781252","display_name":"University of South Carolina","ror":"https://ror.org/02b6qw903","country_code":"US","type":"education","lineage":["https://openalex.org/I155781252"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongpeng Yang","raw_affiliation_strings":["Computational Science and Engineering, University of South Carolina, Columbia, SC, USA","School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University, Tianjin, China"],"raw_orcid":"https://orcid.org/0009-0001-9101-3063","affiliations":[{"raw_affiliation_string":"Computational Science and Engineering, University of South Carolina, Columbia, SC, USA","institution_ids":["https://openalex.org/I155781252"]},{"raw_affiliation_string":"School of Computer Science and Technology, College of Intelligence and Computing, Tianjin University, Tianjin, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100688233","display_name":"Yijie Ding","orcid":"https://orcid.org/0000-0003-2911-7643"},"institutions":[{"id":"https://openalex.org/I152033890","display_name":"Hainan Normal University","ror":"https://ror.org/031dhcv14","country_code":"CN","type":"education","lineage":["https://openalex.org/I152033890"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yijie Ding","raw_affiliation_strings":["Key Laboratory of Computational Science and Application of Hainan Province, Hainan Normal University, Haikou, Hainan, China"],"raw_orcid":"https://orcid.org/0000-0003-2911-7643","affiliations":[{"raw_affiliation_string":"Key Laboratory of Computational Science and Application of Hainan Province, Hainan Normal University, Haikou, Hainan, China","institution_ids":["https://openalex.org/I152033890"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001619694","display_name":"Jijun Tang","orcid":"https://orcid.org/0000-0002-6377-536X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jijun Tang","raw_affiliation_strings":["Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China"],"raw_orcid":"https://orcid.org/0000-0002-6377-536X","affiliations":[{"raw_affiliation_string":"Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100702161","display_name":"Fei Guo","orcid":"https://orcid.org/0000-0001-8346-0798"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei Guo","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, Hunan, China"],"raw_orcid":"https://orcid.org/0000-0001-8346-0798","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":6.4082,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.97432972,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"20","issue":"5","first_page":"3033","last_page":"3043"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9545000195503235,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/matrix-decomposition","display_name":"Matrix decomposition","score":0.6916418075561523},{"id":"https://openalex.org/keywords/regularization","display_name":"Regularization (linguistics)","score":0.6426946520805359},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5931205153465271},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48150429129600525},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45967772603034973},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.4210279881954193},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36468011140823364},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.35402601957321167},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.28736671805381775},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.24666449427604675}],"concepts":[{"id":"https://openalex.org/C42355184","wikidata":"https://www.wikidata.org/wiki/Q1361088","display_name":"Matrix decomposition","level":3,"score":0.6916418075561523},{"id":"https://openalex.org/C2776135515","wikidata":"https://www.wikidata.org/wiki/Q17143721","display_name":"Regularization (linguistics)","level":2,"score":0.6426946520805359},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5931205153465271},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48150429129600525},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45967772603034973},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.4210279881954193},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36468011140823364},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35402601957321167},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.28736671805381775},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.24666449427604675},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C158693339","wikidata":"https://www.wikidata.org/wiki/Q190524","display_name":"Eigenvalues and eigenvectors","level":2,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000076722","descriptor_name":"Drug Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000076722","descriptor_name":"Drug Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000076722","descriptor_name":"Drug Development","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2023.3274587","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2023.3274587","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37159322","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37159322","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1558580378","display_name":null,"funder_award_id":"NSFC 62172296","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2245046682","display_name":null,"funder_award_id":"U22A2038","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7037578608","display_name":null,"funder_award_id":"62172076","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":52,"referenced_works":["https://openalex.org/W1975147762","https://openalex.org/W1976526581","https://openalex.org/W2008381136","https://openalex.org/W2019707847","https://openalex.org/W2031390939","https://openalex.org/W2031954078","https://openalex.org/W2050078980","https://openalex.org/W2062941476","https://openalex.org/W2075897300","https://openalex.org/W2098530568","https://openalex.org/W2113072832","https://openalex.org/W2137084389","https://openalex.org/W2148797284","https://openalex.org/W2151357092","https://openalex.org/W2154654747","https://openalex.org/W2162011385","https://openalex.org/W2171789864","https://openalex.org/W2256553158","https://openalex.org/W2343107734","https://openalex.org/W2346950316","https://openalex.org/W2579434750","https://openalex.org/W2770164249","https://openalex.org/W2790385355","https://openalex.org/W2809156537","https://openalex.org/W2916047525","https://openalex.org/W2922405516","https://openalex.org/W2945027804","https://openalex.org/W2967521176","https://openalex.org/W2997701990","https://openalex.org/W3004260451","https://openalex.org/W3005970824","https://openalex.org/W3013646438","https://openalex.org/W3035188139","https://openalex.org/W3093030756","https://openalex.org/W3096882650","https://openalex.org/W3108634112","https://openalex.org/W3117187745","https://openalex.org/W3119329484","https://openalex.org/W3126749918","https://openalex.org/W3185204125","https://openalex.org/W3193921017","https://openalex.org/W3212252964","https://openalex.org/W3212981333","https://openalex.org/W4200313900","https://openalex.org/W4206547282","https://openalex.org/W4212796599","https://openalex.org/W4220783345","https://openalex.org/W4220904934","https://openalex.org/W4226024053","https://openalex.org/W6662961022","https://openalex.org/W6675747103","https://openalex.org/W6680184138"],"related_works":["https://openalex.org/W2152992791","https://openalex.org/W2112835755","https://openalex.org/W2349674371","https://openalex.org/W4291951920","https://openalex.org/W2963262648","https://openalex.org/W2097495471","https://openalex.org/W1696545756","https://openalex.org/W4301867002","https://openalex.org/W2952827811","https://openalex.org/W2056202066"],"abstract_inverted_index":{"Detecting":[0],"potential":[1,175],"associations":[2],"between":[3],"drugs":[4,89,177],"and":[5,37,90,118,146,148,166,194],"diseases":[6,91],"plays":[7],"an":[8],"indispensable":[9],"role":[10],"in":[11,21,100,153,201],"drug":[12,114],"development,":[13],"which":[14,40],"has":[15,197],"also":[16],"become":[17],"a":[18,55,83,120,150,160,198],"research":[19],"hotspot":[20],"recent":[22],"years.":[23],"Compared":[24],"with":[25,136,186],"traditional":[26],"methods,":[27],"some":[28,187],"computational":[29],"approaches":[30],"have":[31,149],"the":[32,43,47,68,75,94,98,101,110,123,128,154,169,174],"advantages":[33],"of":[34,45,59,70,85,103,122,157,178],"fast":[35],"speed":[36],"low":[38],"cost,":[39],"greatly":[41],"accelerate":[42],"progress":[44],"predicting":[46,173],"drug-disease":[48],"association.":[49],"In":[50,93],"this":[51],"study,":[52],"we":[53,96,182],"propose":[54],"novel":[56],"similarity-based":[57],"method":[58,133],"low-rank":[60,71],"matrix":[61,72],"decomposition":[62],"based":[63],"on":[64,113,140,189],"multi-graph":[65,76],"regularization.":[66],"On":[67],"basis":[69],"factorization":[73],"with$L_{2}$regularization,":[74],"regularization":[77],"constraint":[78],"is":[79,116,134,164],"constructed":[80],"by":[81],"combining":[82,108],"variety":[84],"similarity":[86,111,124],"matrices":[87],"from":[88],"respectively.":[92],"experiments,":[95],"analyze":[97],"difference":[99],"combination":[102],"different":[104],"similarities,":[105],"resulting":[106],"that":[107,168],"all":[109],"information":[112,125],"space":[115],"unnecessary,":[117],"only":[119],"part":[121],"can":[126],"achieve":[127],"desired":[129],"performance.":[130],"Then":[131],"our":[132,179,184,195],"compared":[135],"other":[137],"existing":[138],"models":[139],"three":[141],"data":[142],"sets":[143],"(Fdataset,":[144],"Cdataset":[145],"LRSSLdataset)":[147],"good":[151,199],"advantage":[152],"evaluation":[155],"measurement":[156],"AUPR.":[158],"Besides,":[159],"case":[161],"study":[162],"experiment":[163],"conducted":[165],"showing":[167],"superior":[170],"ability":[171],"for":[172],"disease-related":[176],"model.":[180],"Finally,":[181],"compare":[183],"model":[185,196],"methods":[188],"six":[190],"real":[191,203],"world":[192,204],"datasets,":[193],"performance":[200],"detecting":[202],"data.":[205]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":23},{"year":2023,"cited_by_count":4}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
