{"id":"https://openalex.org/W4367721763","doi":"https://doi.org/10.1109/tcbb.2023.3272400","title":"CRBSP:Prediction of CircRNA-RBP Binding Sites Based on Multimodal Intermediate Fusion","display_name":"CRBSP:Prediction of CircRNA-RBP Binding Sites Based on Multimodal Intermediate Fusion","publication_year":2023,"publication_date":"2023-05-02","ids":{"openalex":"https://openalex.org/W4367721763","doi":"https://doi.org/10.1109/tcbb.2023.3272400","pmid":"https://pubmed.ncbi.nlm.nih.gov/37130249"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2023.3272400","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2023.3272400","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103029518","display_name":"Niannian Liu","orcid":"https://orcid.org/0000-0002-0525-8698"},"institutions":[{"id":"https://openalex.org/I74837319","display_name":"Jiangxi Agricultural University","ror":"https://ror.org/00dc7s858","country_code":"CN","type":"education","lineage":["https://openalex.org/I74837319"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Niannian Liu","raw_affiliation_strings":["College of Computer and Information Engineering, Jiangxi Agricultural University, Nanchang, Jiangxi, China"],"raw_orcid":"https://orcid.org/0000-0002-0525-8698","affiliations":[{"raw_affiliation_string":"College of Computer and Information Engineering, Jiangxi Agricultural University, Nanchang, Jiangxi, China","institution_ids":["https://openalex.org/I74837319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101810353","display_name":"Zequn Zhang","orcid":"https://orcid.org/0000-0002-8158-6562"},"institutions":[{"id":"https://openalex.org/I74837319","display_name":"Jiangxi Agricultural University","ror":"https://ror.org/00dc7s858","country_code":"CN","type":"education","lineage":["https://openalex.org/I74837319"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zequn Zhang","raw_affiliation_strings":["College of Computer and Information Engineering, Jiangxi Agricultural University, Nanchang, Jiangxi, China"],"raw_orcid":"https://orcid.org/0000-0002-8158-6562","affiliations":[{"raw_affiliation_string":"College of Computer and Information Engineering, Jiangxi Agricultural University, Nanchang, Jiangxi, China","institution_ids":["https://openalex.org/I74837319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101603245","display_name":"Yanan Wu","orcid":"https://orcid.org/0000-0002-5611-2285"},"institutions":[{"id":"https://openalex.org/I74837319","display_name":"Jiangxi Agricultural University","ror":"https://ror.org/00dc7s858","country_code":"CN","type":"education","lineage":["https://openalex.org/I74837319"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanan Wu","raw_affiliation_strings":["College of Computer and Information Engineering, Jiangxi Agricultural University, Nanchang, Jiangxi, China"],"raw_orcid":"https://orcid.org/0000-0002-5611-2285","affiliations":[{"raw_affiliation_string":"College of Computer and Information Engineering, Jiangxi Agricultural University, Nanchang, Jiangxi, China","institution_ids":["https://openalex.org/I74837319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100703789","display_name":"Yinglong Wang","orcid":"https://orcid.org/0000-0002-4077-6212"},"institutions":[{"id":"https://openalex.org/I74837319","display_name":"Jiangxi Agricultural University","ror":"https://ror.org/00dc7s858","country_code":"CN","type":"education","lineage":["https://openalex.org/I74837319"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yinglong Wang","raw_affiliation_strings":["College of Computer and Information Engineering, Jiangxi Agricultural University, Nanchang, Jiangxi, China"],"raw_orcid":"https://orcid.org/0000-0002-4077-6212","affiliations":[{"raw_affiliation_string":"College of Computer and Information Engineering, Jiangxi Agricultural University, Nanchang, Jiangxi, China","institution_ids":["https://openalex.org/I74837319"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085126930","display_name":"Ying Liang","orcid":"https://orcid.org/0000-0001-9092-2110"},"institutions":[{"id":"https://openalex.org/I74837319","display_name":"Jiangxi Agricultural University","ror":"https://ror.org/00dc7s858","country_code":"CN","type":"education","lineage":["https://openalex.org/I74837319"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Liang","raw_affiliation_strings":["College of Computer and Information Engineering, Jiangxi Agricultural University, Nanchang, Jiangxi, China"],"raw_orcid":"https://orcid.org/0000-0001-9092-2110","affiliations":[{"raw_affiliation_string":"College of Computer and Information Engineering, Jiangxi Agricultural University, Nanchang, Jiangxi, China","institution_ids":["https://openalex.org/I74837319"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I74837319"],"apc_list":null,"apc_paid":null,"fwci":1.7491,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.84401618,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"20","issue":"5","first_page":"2898","last_page":"2906"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5110920071601868},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4979112148284912},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4735278785228729},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.44900473952293396},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3586098849773407},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2978019118309021},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2800688147544861},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12761980295181274}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5110920071601868},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4979112148284912},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4735278785228729},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.44900473952293396},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3586098849773407},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2978019118309021},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2800688147544861},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12761980295181274}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2023.3272400","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2023.3272400","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37130249","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37130249","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G1239594693","display_name":null,"funder_award_id":"62163018","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":68,"referenced_works":["https://openalex.org/W7721663","https://openalex.org/W1019830208","https://openalex.org/W1539811621","https://openalex.org/W1614298861","https://openalex.org/W1904365287","https://openalex.org/W1966411071","https://openalex.org/W1969729188","https://openalex.org/W1978883675","https://openalex.org/W1991082489","https://openalex.org/W1991244466","https://openalex.org/W2004132756","https://openalex.org/W2021823827","https://openalex.org/W2029897223","https://openalex.org/W2039731962","https://openalex.org/W2044117548","https://openalex.org/W2064165694","https://openalex.org/W2091505355","https://openalex.org/W2115662330","https://openalex.org/W2117977572","https://openalex.org/W2131876387","https://openalex.org/W2147806662","https://openalex.org/W2157009395","https://openalex.org/W2170747616","https://openalex.org/W2210577735","https://openalex.org/W2418417957","https://openalex.org/W2510965737","https://openalex.org/W2530008209","https://openalex.org/W2567080747","https://openalex.org/W2572160591","https://openalex.org/W2587688848","https://openalex.org/W2590653482","https://openalex.org/W2592644437","https://openalex.org/W2593867025","https://openalex.org/W2619383789","https://openalex.org/W2737722001","https://openalex.org/W2759279048","https://openalex.org/W2784434075","https://openalex.org/W2799487719","https://openalex.org/W2806146459","https://openalex.org/W2883534252","https://openalex.org/W2900490197","https://openalex.org/W2915168078","https://openalex.org/W2931923037","https://openalex.org/W2969715183","https://openalex.org/W2973586775","https://openalex.org/W2981572887","https://openalex.org/W2996404781","https://openalex.org/W3011553090","https://openalex.org/W3026425509","https://openalex.org/W3042517483","https://openalex.org/W3083120907","https://openalex.org/W3095596981","https://openalex.org/W3096599651","https://openalex.org/W3112745729","https://openalex.org/W3119787379","https://openalex.org/W3134163647","https://openalex.org/W3141771520","https://openalex.org/W3196282583","https://openalex.org/W3212684988","https://openalex.org/W4206042814","https://openalex.org/W4206826027","https://openalex.org/W4220859562","https://openalex.org/W4280587098","https://openalex.org/W4283706978","https://openalex.org/W6600307240","https://openalex.org/W6636510571","https://openalex.org/W6640036494","https://openalex.org/W6986908424"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2033914206","https://openalex.org/W2042327336"],"abstract_inverted_index":{"Circular":[0],"RNA":[1,28,30],"(CircRNA)":[2],"is":[3,35,46,175,196],"widely":[4],"expressed":[5],"and":[6,9,29,71,92,108,112,117,120],"has":[7,23],"physiological":[8],"pathological":[10],"significance,":[11],"regulating":[12],"post-transcriptional":[13],"processes":[14],"via":[15],"its":[16],"protein-binding":[17],"activity.":[18],"However,":[19],"whereas":[20],"much":[21],"work":[22],"been":[24],"done":[25],"on":[26,47],"linear":[27,185],"binding":[31,39,61,187],"protein":[32],"(RBP),":[33],"little":[34],"known":[36],"about":[37],"the":[38,48,65,75,131,137,146,204],"sites":[40,188],"of":[41,50,79,130,133,145,162,168,184,193,206],"CircRNA.":[42],"The":[43],"current":[44,179],"report":[45],"development":[49],"a":[51,158,172],"medium-term":[52],"multimodal":[53],"data":[54],"fusion":[55,144],"strategy,":[56],"CRBSP,":[57],"to":[58,81,104,177],"predict":[59],"CircRNA-RBP":[60],"sites.":[62],"CRBSP":[63,156],"represents":[64],"CircRNA":[66],"trinucleotide":[67,85,89],"semantic,":[68],"location,":[69],"composition":[70,90,95],"frequency":[72],"information":[73,107],"as":[74],"corresponding":[76],"coding":[77],"methods":[78],"Word":[80],"vector":[82],"(Word2vec),":[83],"Position-specific":[84],"propensity":[86],"(PSTNP),":[87],"Pseudo":[88],"(PseTNC)":[91],"Trinucleotide":[93],"nucleotide":[94],"(TNC),":[96],"respectively.":[97],"CNN":[98],"(Convolution":[99],"Neural":[100],"Networks)":[101],"was":[102,140],"used":[103],"extract":[105],"global":[106],"BiLSTM":[109],"(bidirectional":[110],"Long-":[111],"Short-Term":[113,121],"Memory":[114,122],"network)":[115,123],"encoder":[116],"LSTM":[118],"(Long-":[119],"decoder":[124],"for":[125],"local":[126],"sequence":[127],"information.":[128],"Enhancement":[129],"contributions":[132],"key":[134],"features":[135],"by":[136,142],"self-attention":[138],"mechanism":[139],"followed":[141],"mid-term":[143],"four":[147],"enhanced":[148],"features.":[149],"Logistic":[150],"Regression":[151],"(LR)":[152],"classifier":[153],"showed":[154],"that":[155],"gives":[157],"mean":[159],"AUC":[160,191],"value":[161,192],"0.9362":[163],"through":[164],"5-fold":[165],"Cross":[166],"Validation":[167],"all":[169],"37":[170],"datasets,":[171],"performance":[173],"which":[174,195],"superior":[176],"five":[178],"state-of-the-art":[180],"models.":[181],"Similar":[182],"evaluation":[183],"RNA-RBP":[186],"gave":[189],"an":[190],"0.7615":[194],"also":[197],"higher":[198],"than":[199],"other":[200],"prediction":[201],"methods,":[202],"demonstrating":[203],"robustness":[205],"CRBSP.":[207]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
