{"id":"https://openalex.org/W4361987898","doi":"https://doi.org/10.1109/tcbb.2023.3263521","title":"High Net Information Density DNA Data Storage by the MOPE Encoding Algorithm","display_name":"High Net Information Density DNA Data Storage by the MOPE Encoding Algorithm","publication_year":2023,"publication_date":"2023-03-31","ids":{"openalex":"https://openalex.org/W4361987898","doi":"https://doi.org/10.1109/tcbb.2023.3263521","pmid":"https://pubmed.ncbi.nlm.nih.gov/37015121"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2023.3263521","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2023.3263521","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100526064","display_name":"Yanfen Zheng","orcid":"https://orcid.org/0009-0000-1471-9516"},"institutions":[{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanfen Zheng","raw_affiliation_strings":["Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0009-0000-1471-9516","affiliations":[{"raw_affiliation_string":"Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I4210092944"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063023342","display_name":"Ben Cao","orcid":"https://orcid.org/0000-0003-1503-6009"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ben Cao","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0003-1503-6009","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111651888","display_name":"Jieqiong Wu","orcid":"https://orcid.org/0009-0003-7683-3615"},"institutions":[{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jieqiong Wu","raw_affiliation_strings":["Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0009-0003-7683-3615","affiliations":[{"raw_affiliation_string":"Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I4210092944"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037756311","display_name":"Bin Wang","orcid":"https://orcid.org/0000-0002-8800-000X"},"institutions":[{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Wang","raw_affiliation_strings":["Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0002-8800-000X","affiliations":[{"raw_affiliation_string":"Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I4210092944"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100381999","display_name":"Qiang Zhang","orcid":"https://orcid.org/0000-0003-3776-9799"},"institutions":[{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang Zhang","raw_affiliation_strings":["Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0003-3776-9799","affiliations":[{"raw_affiliation_string":"Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering, Dalian University, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I4210092944"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.4251,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.88848266,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"20","issue":"5","first_page":"2992","last_page":"3000"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/payload","display_name":"Payload (computing)","score":0.7369861006736755},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.7065247297286987},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6684703826904297},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.6663542985916138},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.6433067321777344},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.5580762624740601},{"id":"https://openalex.org/keywords/dna-computing","display_name":"DNA computing","score":0.4301735460758209},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2136303186416626},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15946164727210999},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.13979876041412354},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1266970932483673},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09115469455718994},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.08605372905731201}],"concepts":[{"id":"https://openalex.org/C134066672","wikidata":"https://www.wikidata.org/wiki/Q1424639","display_name":"Payload (computing)","level":3,"score":0.7369861006736755},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.7065247297286987},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6684703826904297},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.6663542985916138},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.6433067321777344},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5580762624740601},{"id":"https://openalex.org/C82047324","wikidata":"https://www.wikidata.org/wiki/Q177126","display_name":"DNA computing","level":3,"score":0.4301735460758209},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2136303186416626},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15946164727210999},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.13979876041412354},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1266970932483673},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09115469455718994},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.08605372905731201},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C158379750","wikidata":"https://www.wikidata.org/wiki/Q214111","display_name":"Network packet","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2023.3263521","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2023.3263521","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37015121","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37015121","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2767041317","display_name":null,"funder_award_id":"2021-MS-344","funder_id":"https://openalex.org/F4320323086","funder_display_name":"Natural Science Foundation of Liaoning Province"},{"id":"https://openalex.org/G4825884765","display_name":null,"funder_award_id":"2021-KF-11-03","funder_id":"https://openalex.org/F4320323086","funder_display_name":"Natural Science Foundation of Liaoning Province"},{"id":"https://openalex.org/G5005077530","display_name":null,"funder_award_id":"D22006","funder_id":"https://openalex.org/F4320327912","funder_display_name":"Higher Education Discipline Innovation Project"},{"id":"https://openalex.org/G7571448297","display_name":null,"funder_award_id":"2022-KF-12-14","funder_id":"https://openalex.org/F4320323086","funder_display_name":"Natural Science Foundation of Liaoning Province"},{"id":"https://openalex.org/G7772559714","display_name":"DNA\u6838\u9176\u7f6e\u6362\u9a71\u52a8\u7684DNA\u8ba1\u7b97\u6a21\u578b\u7814\u7a76","funder_award_id":"61972266","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8292714235","display_name":null,"funder_award_id":"XLYC2008017","funder_id":"https://openalex.org/F4320329895","funder_display_name":"Liaoning Revitalization Talents Program"},{"id":"https://openalex.org/G8610243087","display_name":null,"funder_award_id":"62272079","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323086","display_name":"Natural Science Foundation of Liaoning Province","ror":null},{"id":"https://openalex.org/F4320327912","display_name":"Higher Education Discipline Innovation Project","ror":null},{"id":"https://openalex.org/F4320329895","display_name":"Liaoning Revitalization Talents Program","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1971584645","https://openalex.org/W2006907039","https://openalex.org/W2025383314","https://openalex.org/W2043653977","https://openalex.org/W2060108852","https://openalex.org/W2108541849","https://openalex.org/W2114487425","https://openalex.org/W2143726250","https://openalex.org/W2162980030","https://openalex.org/W2180288806","https://openalex.org/W2207731458","https://openalex.org/W2333320475","https://openalex.org/W2467327288","https://openalex.org/W2471091339","https://openalex.org/W2512345221","https://openalex.org/W2536008561","https://openalex.org/W2587793249","https://openalex.org/W2592122940","https://openalex.org/W2762813058","https://openalex.org/W2771060953","https://openalex.org/W2781751566","https://openalex.org/W2788257106","https://openalex.org/W2887171350","https://openalex.org/W2896046649","https://openalex.org/W2896926252","https://openalex.org/W2924600982","https://openalex.org/W2936227260","https://openalex.org/W2940793962","https://openalex.org/W2950008143","https://openalex.org/W2956609552","https://openalex.org/W2962809499","https://openalex.org/W2975989328","https://openalex.org/W2984191725","https://openalex.org/W2989600529","https://openalex.org/W3012628800","https://openalex.org/W3023665079","https://openalex.org/W3046046632","https://openalex.org/W3083506329","https://openalex.org/W3086044408","https://openalex.org/W3126872424","https://openalex.org/W3126923795","https://openalex.org/W3159477052","https://openalex.org/W3159551209","https://openalex.org/W3172251530","https://openalex.org/W3184008446","https://openalex.org/W3187552045","https://openalex.org/W3206940852","https://openalex.org/W3212218823","https://openalex.org/W4226128442","https://openalex.org/W4283796907","https://openalex.org/W4307995536"],"related_works":["https://openalex.org/W2372020181","https://openalex.org/W2156531654","https://openalex.org/W1581723585","https://openalex.org/W4378714697","https://openalex.org/W2294330161","https://openalex.org/W2940472653","https://openalex.org/W2253069048","https://openalex.org/W2804553224","https://openalex.org/W140709781","https://openalex.org/W3214340375"],"abstract_inverted_index":{"DNA":[0,27,167,179],"has":[1,125],"recently":[2],"been":[3],"recognized":[4],"as":[5],"an":[6,45],"attractive":[7],"storage":[8],"medium":[9],"due":[10],"to":[11,26,71,85,136],"its":[12],"high":[13,38,152],"reliability,":[14],"capacity,":[15],"and":[16,37,48,59,77,116,156,169],"durability.":[17],"However,":[18],"encoding":[19,51,149],"algorithms":[20],"that":[21,92,120],"simply":[22],"map":[23],"binary":[24],"data":[25],"sequences":[28],"have":[29],"the":[30,73,78,87,93,97,103,110,121,137,164,174],"disadvantages":[31],"of":[32,96,113,130,141,166,176],"low":[33],"net":[34,127,153],"information":[35,128,139,154],"density":[36,129,155],"synthesis":[39,168],"cost.":[40],"Therefore,":[41],"this":[42],"paper":[43],"proposes":[44],"efficient,":[46],"feasible,":[47],"highly":[49],"robust":[50],"algorithm":[52,68,82,105,124,150],"called":[53],"MOPE":[54,148],"(Modified":[55],"Barnacles":[56,64],"Mating":[57,65],"Optimizer":[58,66],"Payload":[60,79],"Encoding).":[61],"The":[62,89,146],"Modified":[63],"(MBMO)":[67],"is":[69,83,106,134],"used":[70,84],"construct":[72],"non-payload":[74,98],"coding":[75,99],"set,":[76],"Encoding":[80],"(PE)":[81],"encode":[86],"payload.":[88],"results":[90],"show":[91],"lower":[94],"bound":[95],"set":[100],"constructed":[101],"by":[102],"MBMO":[104],"3%-18%":[107],"higher":[108],"than":[109],"optimal":[111],"result":[112],"previous":[114],"work,":[115],"theoretical":[117],"analysis":[118],"shows":[119],"designed":[122],"PE":[123],"a":[126],"1.90":[131],"bits/nt,":[132],"which":[133],"close":[135],"ideal":[138],"capacity":[140],"2":[142],"bits":[143],"per":[144],"nucleotide.":[145],"proposed":[147],"with":[151],"satisfying":[157],"constraints":[158],"can":[159],"not":[160],"only":[161],"effectively":[162],"reduce":[163,173],"cost":[165],"sequencing":[170],"but":[171],"also":[172],"occurrence":[175],"errors":[177],"during":[178],"storage.":[180]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
