{"id":"https://openalex.org/W4362496254","doi":"https://doi.org/10.1109/tcbb.2023.3258448","title":"iSnoDi-MDRF: Identifying snoRNA-Disease Associations Based on Multiple Biological Data by Ranking Framework","display_name":"iSnoDi-MDRF: Identifying snoRNA-Disease Associations Based on Multiple Biological Data by Ranking Framework","publication_year":2023,"publication_date":"2023-04-03","ids":{"openalex":"https://openalex.org/W4362496254","doi":"https://doi.org/10.1109/tcbb.2023.3258448","pmid":"https://pubmed.ncbi.nlm.nih.gov/37030816"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2023.3258448","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2023.3258448","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107678765","display_name":"Wenxiang Zhang","orcid":"https://orcid.org/0000-0002-8926-1615"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Wenxiang Zhang","raw_affiliation_strings":["School of Computer Science and Technology, Beiging Institute of Technology, Beiging, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Beiging Institute of Technology, Beiging, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100395591","display_name":"Bin Liu","orcid":"https://orcid.org/0000-0003-3685-9469"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bin Liu","raw_affiliation_strings":["School of Computer Science and Technology and Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Tecnology, Beijing, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology and Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Tecnology, Beijing, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5107678765"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.2261,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.87750985,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"20","issue":"5","first_page":"3013","last_page":"3019"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6461641788482666},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5790819525718689},{"id":"https://openalex.org/keywords/small-nucleolar-rna","display_name":"Small nucleolar RNA","score":0.57712322473526},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.45513594150543213},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39925774931907654},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3972132205963135},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.24679243564605713},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24500492215156555},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2365226149559021},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.10814130306243896},{"id":"https://openalex.org/keywords/non-coding-rna","display_name":"Non-coding RNA","score":0.10010847449302673},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08943355083465576},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.0798337459564209}],"concepts":[{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6461641788482666},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5790819525718689},{"id":"https://openalex.org/C179255354","wikidata":"https://www.wikidata.org/wiki/Q284416","display_name":"Small nucleolar RNA","level":5,"score":0.57712322473526},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.45513594150543213},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39925774931907654},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3972132205963135},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.24679243564605713},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24500492215156555},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2365226149559021},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.10814130306243896},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.10010847449302673},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08943355083465576},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.0798337459564209}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020537","descriptor_name":"RNA, Small Nucleolar","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020537","descriptor_name":"RNA, Small Nucleolar","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D020537","descriptor_name":"RNA, Small Nucleolar","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2023.3258448","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2023.3258448","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:37030816","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37030816","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6351260564","display_name":null,"funder_award_id":"62271049","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6446245973","display_name":null,"funder_award_id":"62250028","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7894669521","display_name":null,"funder_award_id":"U22A2039","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":69,"referenced_works":["https://openalex.org/W1494484168","https://openalex.org/W1980900189","https://openalex.org/W1998314264","https://openalex.org/W2004132756","https://openalex.org/W2022523272","https://openalex.org/W2043841998","https://openalex.org/W2045949302","https://openalex.org/W2049050286","https://openalex.org/W2055986128","https://openalex.org/W2070777085","https://openalex.org/W2076618162","https://openalex.org/W2095321031","https://openalex.org/W2097343134","https://openalex.org/W2101234009","https://openalex.org/W2101626488","https://openalex.org/W2113640060","https://openalex.org/W2128049108","https://openalex.org/W2129245267","https://openalex.org/W2134619919","https://openalex.org/W2151804955","https://openalex.org/W2294661159","https://openalex.org/W2382893801","https://openalex.org/W2419892062","https://openalex.org/W2608035254","https://openalex.org/W2753269195","https://openalex.org/W2771031897","https://openalex.org/W2884745705","https://openalex.org/W2898073868","https://openalex.org/W2942820662","https://openalex.org/W2979556676","https://openalex.org/W2979751848","https://openalex.org/W2983166786","https://openalex.org/W2983775972","https://openalex.org/W2989982253","https://openalex.org/W2991743543","https://openalex.org/W3001440478","https://openalex.org/W3003737276","https://openalex.org/W3014082018","https://openalex.org/W3017090501","https://openalex.org/W3020929333","https://openalex.org/W3022179362","https://openalex.org/W3023998386","https://openalex.org/W3025373576","https://openalex.org/W3037854057","https://openalex.org/W3039920514","https://openalex.org/W3043480632","https://openalex.org/W3045794389","https://openalex.org/W3046754742","https://openalex.org/W3080501980","https://openalex.org/W3084310327","https://openalex.org/W3092486253","https://openalex.org/W3094998422","https://openalex.org/W3112889838","https://openalex.org/W3116906693","https://openalex.org/W3119183218","https://openalex.org/W3124856033","https://openalex.org/W3126117467","https://openalex.org/W3138710788","https://openalex.org/W3151675221","https://openalex.org/W3157479389","https://openalex.org/W3159197832","https://openalex.org/W3185009863","https://openalex.org/W3186054896","https://openalex.org/W3196100602","https://openalex.org/W4210683988","https://openalex.org/W4284688416","https://openalex.org/W4310939775","https://openalex.org/W6675354045","https://openalex.org/W6679205522"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2263534175","https://openalex.org/W4239269398","https://openalex.org/W2044575338","https://openalex.org/W2378816606","https://openalex.org/W1985480639","https://openalex.org/W2082860237","https://openalex.org/W2108297093","https://openalex.org/W2603331522","https://openalex.org/W2119695867"],"abstract_inverted_index":{"Accumulating":[0],"evidence":[1],"indicates":[2],"that":[3,154],"the":[4,79,104],"dysregulation":[5],"of":[6,167],"small":[7],"nucleolar":[8],"RNAs":[9],"(snoRNAs)":[10],"is":[11,21,113,156,170],"relevant":[12],"with":[13,62,68,132],"diseases.":[14],"Identifying":[15],"snoRNA-disease":[16,73,80,95,149,162],"associations":[17,74,96,120,138],"by":[18],"computational":[19],"methods":[20],"desired":[22],"for":[23,147,159],"biologists,":[24],"which":[25,102,112],"can":[26,128],"save":[27],"considerable":[28],"costs":[29],"and":[30,124],"time":[31],"compared":[32],"biological":[33,100],"experiments.":[34],"However,":[35],"it":[36],"still":[37],"faces":[38],"some":[39],"challenges":[40],"as":[41],"followings:":[42],"(i)":[43,107],"Many":[44],"snoRNAs":[45,55,123],"are":[46,139],"detected":[47],"in":[48],"recent":[49],"years,":[50],"but":[51,126],"only":[52,69,115],"a":[53,70,87,144],"few":[54,71],"have":[56],"been":[57],"proved":[58],"to":[59,76,92,117,141],"be":[60],"associated":[61,131],"diseases;":[63],"(ii)":[64,135],"Computational":[65],"predictors":[66],"trained":[67],"known":[72,122],"fail":[75],"accurately":[77],"identify":[78,93,118,129],"associations.":[81,163],"In":[82],"this":[83],"study,":[84],"we":[85],"propose":[86],"ranking":[88,110],"framework,":[89,111],"called":[90],"iSnoDi-MDRF,":[91],"potential":[94,119,161],"based":[97],"on":[98],"multiple":[99],"data,":[101],"has":[103],"following":[105],"highlights:":[106],"iSnoDi-MDRF":[108,155,168],"integrates":[109],"not":[114],"able":[116],"between":[121],"diseases,":[125],"also":[127],"diseases":[130],"new":[133],"snoRNAs.":[134],"Known":[136],"gene-disease":[137],"employed":[140],"help":[142],"train":[143],"mature":[145],"model":[146],"predicting":[148],"association.":[150],"Experimental":[151],"results":[152],"illustrate":[153],"very":[157],"suitable":[158],"identifying":[160],"The":[164],"web":[165],"server":[166],"predictor":[169],"freely":[171],"available":[172],"at":[173],"http://bliulab.net/iSnoDi-MDRF/.":[174]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
