{"id":"https://openalex.org/W4310588941","doi":"https://doi.org/10.1109/tcbb.2022.3225675","title":"Global Optimization Approach for Parameter Estimation in Stochastic Dynamic Models of Biosystems","display_name":"Global Optimization Approach for Parameter Estimation in Stochastic Dynamic Models of Biosystems","publication_year":2022,"publication_date":"2022-12-01","ids":{"openalex":"https://openalex.org/W4310588941","doi":"https://doi.org/10.1109/tcbb.2022.3225675","pmid":"https://pubmed.ncbi.nlm.nih.gov/36449576"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2022.3225675","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2022.3225675","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://digital.csic.es/bitstream/10261/353257/3/Sequeiros_2023_IEEE.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023412762","display_name":"Carlos Sequeiros","orcid":"https://orcid.org/0000-0002-6530-6807"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210098595","display_name":"Misi\u00f3n Biol\u00f3gica de Galicia","ror":"https://ror.org/00tpn9z48","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210098595"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos Sequeiros","raw_affiliation_strings":["Computational Biology Lab, MBG-CSIC, Spanish National Research Council, Pontevedra, Spain"],"raw_orcid":"https://orcid.org/0000-0002-6530-6807","affiliations":[{"raw_affiliation_string":"Computational Biology Lab, MBG-CSIC, Spanish National Research Council, Pontevedra, Spain","institution_ids":["https://openalex.org/I134820265","https://openalex.org/I4210098595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069067835","display_name":"Irene Otero\u2010Muras","orcid":"https://orcid.org/0000-0003-2895-997X"},"institutions":[{"id":"https://openalex.org/I4210152685","display_name":"Institute for Integrative Systems Biology","ror":"https://ror.org/05jw4kp39","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I16097986","https://openalex.org/I4210152685"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Irene Otero-Muras","raw_affiliation_strings":["Instituto de Biolog&#x00ED;a Integrativa de Sistemas (I2SysBio), CSIC-Universitat de Val&#x00E8;ncia, Paterna, Val\u00e8ncia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Biolog&#x00ED;a Integrativa de Sistemas (I2SysBio), CSIC-Universitat de Val&#x00E8;ncia, Paterna, Val\u00e8ncia, Spain","institution_ids":["https://openalex.org/I4210152685"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063346914","display_name":"Carlos V\u00e1zquez","orcid":"https://orcid.org/0000-0001-6591-2252"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Carlos V\u00e1zquez","raw_affiliation_strings":["Department of Mathematics and CITIC, Universidade da Coru&#x00F1;a, A Coru&#x00F1;a, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and CITIC, Universidade da Coru&#x00F1;a, A Coru&#x00F1;a, Spain","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090264675","display_name":"Julio R. Banga","orcid":"https://orcid.org/0000-0002-4245-0320"},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I4210098595","display_name":"Misi\u00f3n Biol\u00f3gica de Galicia","ror":"https://ror.org/00tpn9z48","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210098595"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Julio R. Banga","raw_affiliation_strings":["Computational Biology Lab, MBG-CSIC, Spanish National Research Council, Pontevedra, Spain"],"raw_orcid":"https://orcid.org/0000-0002-4245-0320","affiliations":[{"raw_affiliation_string":"Computational Biology Lab, MBG-CSIC, Spanish National Research Council, Pontevedra, Spain","institution_ids":["https://openalex.org/I134820265","https://openalex.org/I4210098595"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.6242,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.63987344,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"20","issue":"3","first_page":"1971","last_page":"1982"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11829","display_name":"Mathematical Biology Tumor Growth","score":0.9453999996185303,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9125999808311462,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.5205065608024597},{"id":"https://openalex.org/keywords/estimation","display_name":"Estimation","score":0.4950973093509674},{"id":"https://openalex.org/keywords/estimation-theory","display_name":"Estimation theory","score":0.48222100734710693},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4513319432735443},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3796316981315613},{"id":"https://openalex.org/keywords/applied-mathematics","display_name":"Applied mathematics","score":0.3459394574165344},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.22076410055160522},{"id":"https://openalex.org/keywords/economics","display_name":"Economics","score":0.1291675865650177}],"concepts":[{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.5205065608024597},{"id":"https://openalex.org/C96250715","wikidata":"https://www.wikidata.org/wiki/Q965330","display_name":"Estimation","level":2,"score":0.4950973093509674},{"id":"https://openalex.org/C167928553","wikidata":"https://www.wikidata.org/wiki/Q1376021","display_name":"Estimation theory","level":2,"score":0.48222100734710693},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4513319432735443},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3796316981315613},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.3459394574165344},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.22076410055160522},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.1291675865650177},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003201","descriptor_name":"Computers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/tcbb.2022.3225675","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2022.3225675","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36449576","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36449576","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/353257","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/353257","pdf_url":"https://digital.csic.es/bitstream/10261/353257/3/Sequeiros_2023_IEEE.pdf","source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"}],"best_oa_location":{"id":"pmh:oai:digital.csic.es:10261/353257","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/353257","pdf_url":"https://digital.csic.es/bitstream/10261/353257/3/Sequeiros_2023_IEEE.pdf","source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"art\u00edculo"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6100000143051147,"display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G1175115578","display_name":null,"funder_award_id":"AEI//10.13039/501100011033/","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G1855990336","display_name":null,"funder_award_id":".13039/501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G2262748287","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G2309174360","display_name":null,"funder_award_id":"10.13039","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G279363373","display_name":null,"funder_award_id":"MCIN/AEI/10.13039/501100011033,","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G300979063","display_name":null,"funder_award_id":"10.13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3239720275","display_name":null,"funder_award_id":"PID2020-117271RB-C22","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G34346518","display_name":null,"funder_award_id":"MCIN/AEI/10.13039/501 100 011 033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3480869486","display_name":null,"funder_award_id":"13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G3876637791","display_name":null,"funder_award_id":"ED431G","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G4092263876","display_name":null,"funder_award_id":"MCIN/AEI /10.13039/501100011033","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G4151429518","display_name":null,"funder_award_id":"PID2021-127888NA-I00","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G425668148","display_name":null,"funder_award_id":".13039/501100011033","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G430777504","display_name":null,"funder_award_id":"10.13039/501100011033/","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G4484717067","display_name":null,"funder_award_id":"PID2021-127888NA-I00","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G5080475149","display_name":null,"funder_award_id":"10.13039","funder_id":"https://openalex.org/F4320335598","funder_display_name":"Agencia Estatal de Investigaci\u00f3n"},{"id":"https://openalex.org/G5421974903","display_name":null,"funder_award_id":"501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G5543874812","display_name":null,"funder_award_id":"MTM2016-76497-R","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G5805502524","display_name":null,"funder_award_id":"PID2020","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G6425714947","display_name":null,"funder_award_id":"ED431C 2018/033","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G726424357","display_name":null,"funder_award_id":"ED431G 2019/01","funder_id":"https://openalex.org/F4320326655","funder_display_name":"Xunta de Galicia"},{"id":"https://openalex.org/G99296377","display_name":null,"funder_award_id":"/AEI/10.13039/ 501100011033","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"}],"funders":[{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320326655","display_name":"Xunta de Galicia","ror":"https://ror.org/0181xnw06"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4310588941.pdf","grobid_xml":"https://content.openalex.org/works/W4310588941.grobid-xml"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W17119009","https://openalex.org/W96334552","https://openalex.org/W155156393","https://openalex.org/W164384110","https://openalex.org/W1509329028","https://openalex.org/W1563231564","https://openalex.org/W1600301286","https://openalex.org/W1847315806","https://openalex.org/W1965555277","https://openalex.org/W1972840179","https://openalex.org/W1982258483","https://openalex.org/W1985937069","https://openalex.org/W2004322850","https://openalex.org/W2021872116","https://openalex.org/W2030102144","https://openalex.org/W2033783472","https://openalex.org/W2042321087","https://openalex.org/W2085061065","https://openalex.org/W2086309978","https://openalex.org/W2103641729","https://openalex.org/W2108493072","https://openalex.org/W2111652881","https://openalex.org/W2115368299","https://openalex.org/W2120196508","https://openalex.org/W2127419446","https://openalex.org/W2140484213","https://openalex.org/W2148321265","https://openalex.org/W2154904851","https://openalex.org/W2161301127","https://openalex.org/W2165603655","https://openalex.org/W2167154952","https://openalex.org/W2311223887","https://openalex.org/W2500539065","https://openalex.org/W2560264276","https://openalex.org/W2571863445","https://openalex.org/W2598638843","https://openalex.org/W2763794668","https://openalex.org/W2770910920","https://openalex.org/W2791956368","https://openalex.org/W2806737128","https://openalex.org/W2808920922","https://openalex.org/W2888658056","https://openalex.org/W2898780494","https://openalex.org/W2902000707","https://openalex.org/W2905450522","https://openalex.org/W2914908364","https://openalex.org/W2932160358","https://openalex.org/W2933072011","https://openalex.org/W2952056515","https://openalex.org/W3003204737","https://openalex.org/W3043504524","https://openalex.org/W3092226296","https://openalex.org/W3112752205","https://openalex.org/W3126293391","https://openalex.org/W3139456908","https://openalex.org/W4231963165","https://openalex.org/W4249545506","https://openalex.org/W4253187718","https://openalex.org/W6655921739","https://openalex.org/W6773071813"],"related_works":["https://openalex.org/W1979597421","https://openalex.org/W2007980826","https://openalex.org/W4245490552","https://openalex.org/W4225152035","https://openalex.org/W2061531152","https://openalex.org/W3002753104","https://openalex.org/W2077600819","https://openalex.org/W1587224694","https://openalex.org/W2911598644","https://openalex.org/W2157051616"],"abstract_inverted_index":{"Mechanistic":[0],"dynamic":[1,55,71],"models":[2,45,56],"have":[3],"become":[4],"an":[5],"essential":[6],"tool":[7],"for":[8,120,159,164,198,212,269],"understanding":[9],"biomolecular":[10],"networks":[11],"and":[12,103,162,172,203,248],"other":[13],"biological":[14],"systems.":[15],"Biochemical":[16],"stochasticity":[17],"can":[18],"be":[19,58],"extremely":[20],"important":[21],"in":[22,69,241,260],"some":[23],"situations,":[24],"e.g.,":[25],"at":[26,299],"the":[27,38,51,63,110,113,118,151,177,184,190,194,224,270,293],"single-cell":[28],"level":[29],"where":[30],"there":[31],"is":[32,78,196,297],"a":[33,88,99,130,134,142,235,238,244,249,266],"low":[34,200],"copy":[35,201],"number":[36],"of":[37,66,112,122,129,176],"species":[39],"involved.":[40],"In":[41,145],"these":[42,258],"scenarios,":[43],"deterministic":[44,84],"are":[46,187],"not":[47],"suitable":[48],"to":[49,109,147,193,208,284,291],"characterize":[50],"dynamics,":[52],"so":[53],"stochastic":[54,70,105,220],"should":[57],"considered.":[59],"Here,":[60],"we":[61,126,153],"address":[62],"challenging":[64,233],"problem":[65],"parameter":[67,210],"estimation":[68,211],"models.":[72],"Despite":[73],"recent":[74,285],"advances,":[75],"this":[76],"area":[77],"considerably":[79],"less":[80],"mature":[81],"than":[82],"its":[83],"counterpart.":[85],"We":[86,227],"present":[87,155],"novel":[89,131],"strategy":[90,230],"based":[91],"on":[92],"two":[93,272],"components:":[94],"(i)":[95],"global":[96],"optimization":[97],"via":[98],"hybrid":[100],"stochastic-deterministic":[101],"approach,":[102],"(ii)":[104],"simulation":[106],"techniques":[107],"tailored":[108],"sparsity":[111],"available":[114,298],"experimental":[115],"data.":[116],"Regarding":[117],"latter,":[119],"cases":[121],"dense":[123],"population":[124],"data":[125],"make":[127],"use":[128],"approach":[132],"using":[133,141,274],"Partial":[135],"Integro-Differential":[136],"Equation":[137,180],"(PIDE)":[138],"model":[139],"solved":[140],"semilagrangian":[143],"method.":[144],"order":[146],"further":[148],"speed":[149],"up":[150],"simulations,":[152],"also":[154,163],"efficient":[156],"parallel":[157],"implementations":[158],"multi-core":[160],"CPUs":[161],"graphical":[165],"processing":[166],"units":[167],"(GPUs).":[168],"Importantly,":[169],"whereas":[170],"SDE":[171],"Fokker":[173],"Planck":[174],"approximations":[175],"Chemical":[178],"Master":[179],"(CME)":[181],"apply":[182],"when":[183],"reactant":[185],"populations":[186],"sufficiently":[188],"large,":[189],"PIDE":[191],"approximation":[192],"CME":[195],"valid":[197],"very":[199,261,279],"numbers,":[202],"therefore":[204],"they":[205],"enable":[206],"us":[207],"tackle":[209],"systems":[213],"with":[214,231,282],"large":[215],"intrinsic":[216],"molecular":[217],"noise,":[218],"(highly":[219],"regimes":[221],"far":[222],"from":[223],"thermodynamic":[225],"limit).":[226],"test":[228],"our":[229],"four":[232],"problems:":[234],"Lotka-Volterra":[236],"system,":[237],"polarization":[239],"system":[240],"S.":[242],"cerevisiae,":[243],"genetic":[245,250],"toggle":[246],"switch,":[247],"circadian":[251],"oscillator.":[252],"Our":[253],"method":[254],"could":[255],"successfully":[256],"solve":[257],"problems":[259],"reasonable":[262],"computation":[263],"times":[264],"(often":[265],"few":[267],"minutes":[268],"first":[271],"problems)":[273],"standard":[275],"low-cost":[276],"hardware,":[277],"showing":[278],"significant":[280],"speedups":[281],"respect":[283],"alternative":[286],"methods.":[287],"The":[288],"code":[289],"used":[290],"obtain":[292],"results":[294],"reported":[295],"here":[296],"https://doi.org/10.5281/zenodo.5195408.":[300]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-08-18T07:49:30.821534","created_date":"2025-10-10T00:00:00"}
