{"id":"https://openalex.org/W4290993847","doi":"https://doi.org/10.1109/tcbb.2022.3198003","title":"Effectively Identifying Compound-Protein Interaction Using Graph Neural Representation","display_name":"Effectively Identifying Compound-Protein Interaction Using Graph Neural Representation","publication_year":2022,"publication_date":"2022-08-11","ids":{"openalex":"https://openalex.org/W4290993847","doi":"https://doi.org/10.1109/tcbb.2022.3198003","pmid":"https://pubmed.ncbi.nlm.nih.gov/35951570"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2022.3198003","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2022.3198003","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027410770","display_name":"Xuan Lin","orcid":"https://orcid.org/0000-0001-7216-1821"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]},{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xuan Lin","raw_affiliation_strings":["College of Computer Science and Technology, Hunan University, Changsha, China","Key Laboratory of Intelligent Computing and Information Processing, Ministry of Education, Xiangtan University, Xiangtan, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Information Processing, Ministry of Education, Xiangtan University, Xiangtan, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021932264","display_name":"Zhe Quan","orcid":"https://orcid.org/0000-0003-2669-9190"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhe Quan","raw_affiliation_strings":["College of Computer Science and Technology, Hunan University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037730132","display_name":"Zhi-Jie Wang","orcid":"https://orcid.org/0000-0002-6865-7899"},"institutions":[{"id":"https://openalex.org/I158842170","display_name":"Chongqing University","ror":"https://ror.org/023rhb549","country_code":"CN","type":"education","lineage":["https://openalex.org/I158842170"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhi-Jie Wang","raw_affiliation_strings":["College of Computer Science, Ministry of Education, Key Laboratory of Dependable Service Computing in Cyber Physical Society, Chongqing University, Chongqing, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science, Ministry of Education, Key Laboratory of Dependable Service Computing in Cyber Physical Society, Chongqing University, Chongqing, China","institution_ids":["https://openalex.org/I158842170"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056796466","display_name":"Yan Guo","orcid":"https://orcid.org/0000-0001-5252-3960"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Guo","raw_affiliation_strings":["College of Computer Science and Technology, Hunan University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027286013","display_name":"Xiangxiang Zeng","orcid":"https://orcid.org/0000-0001-6201-0114"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangxiang Zeng","raw_affiliation_strings":["College of Computer Science and Technology, Hunan University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036357902","display_name":"Philip S. Yu","orcid":"https://orcid.org/0000-0002-3491-5968"},"institutions":[{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip S. Yu","raw_affiliation_strings":["Department of Computer Science, University of Illinois at Chicago, Chicago, IL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL, USA","institution_ids":["https://openalex.org/I39422238"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5027410770"],"corresponding_institution_ids":["https://openalex.org/I16609230","https://openalex.org/I4610292"],"apc_list":null,"apc_paid":null,"fwci":2.9216,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.92133856,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"20","issue":"2","first_page":"932","last_page":"943"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7058887481689453},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5677287578582764},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.556342363357544},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5563244819641113},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5221405625343323},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5051348805427551},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4834080934524536},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4605708420276642},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4419862926006317},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.43379244208335876},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.4211214482784271},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.377183735370636},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1163492202758789}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7058887481689453},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5677287578582764},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.556342363357544},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5563244819641113},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5221405625343323},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5051348805427551},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4834080934524536},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4605708420276642},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4419862926006317},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.43379244208335876},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.4211214482784271},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.377183735370636},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1163492202758789},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2022.3198003","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2022.3198003","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35951570","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35951570","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1612661125","display_name":null,"funder_award_id":"2021JJ10020","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G2126306317","display_name":null,"funder_award_id":"1909323","funder_id":"https://openalex.org/F4320335353","funder_display_name":"National Science Foundation of Sri Lanka"},{"id":"https://openalex.org/G3100921537","display_name":null,"funder_award_id":"2020JJ4215","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G3853211998","display_name":null,"funder_award_id":"1930941","funder_id":"https://openalex.org/F4320335353","funder_display_name":"National Science Foundation of Sri Lanka"},{"id":"https://openalex.org/G4430803433","display_name":null,"funder_award_id":"61972138","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4993214521","display_name":null,"funder_award_id":"2022JJ40451","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G5007580677","display_name":null,"funder_award_id":"61972425","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5091875258","display_name":null,"funder_award_id":"61872309","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5477186794","display_name":null,"funder_award_id":"62122025","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5529347993","display_name":null,"funder_award_id":"62102140","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6740629354","display_name":null,"funder_award_id":"2106758","funder_id":"https://openalex.org/F4320335353","funder_display_name":"National Science Foundation of Sri Lanka"},{"id":"https://openalex.org/G6840496190","display_name":null,"funder_award_id":"U1811264","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8723908073","display_name":null,"funder_award_id":"1763325","funder_id":"https://openalex.org/F4320335353","funder_display_name":"National Science Foundation of Sri Lanka"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322843","display_name":"Natural Science Foundation of\u00a0Hunan Province","ror":null},{"id":"https://openalex.org/F4320335353","display_name":"National Science Foundation of Sri Lanka","ror":"https://ror.org/010xaa060"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1501531009","https://openalex.org/W1921523184","https://openalex.org/W2028629022","https://openalex.org/W2038702914","https://openalex.org/W2085833518","https://openalex.org/W2100672820","https://openalex.org/W2109991441","https://openalex.org/W2134967712","https://openalex.org/W2137507165","https://openalex.org/W2138512826","https://openalex.org/W2139736926","https://openalex.org/W2148145769","https://openalex.org/W2154896031","https://openalex.org/W2161607603","https://openalex.org/W2194775991","https://openalex.org/W2214665483","https://openalex.org/W2266733933","https://openalex.org/W2343107734","https://openalex.org/W2399976582","https://openalex.org/W2410318617","https://openalex.org/W2469049024","https://openalex.org/W2513880868","https://openalex.org/W2565185351","https://openalex.org/W2583907533","https://openalex.org/W2786016794","https://openalex.org/W2789652838","https://openalex.org/W2806887204","https://openalex.org/W2807792492","https://openalex.org/W2809216727","https://openalex.org/W2860192827","https://openalex.org/W2913293259","https://openalex.org/W2952522777","https://openalex.org/W3004946973","https://openalex.org/W4256509016","https://openalex.org/W6640185926","https://openalex.org/W6682691769","https://openalex.org/W6688357764","https://openalex.org/W6713134421","https://openalex.org/W6726873649","https://openalex.org/W6754929296"],"related_works":["https://openalex.org/W4312417841","https://openalex.org/W4321369474","https://openalex.org/W2731899572","https://openalex.org/W3133861977","https://openalex.org/W4200173597","https://openalex.org/W3116150086","https://openalex.org/W2999805992","https://openalex.org/W4380075502","https://openalex.org/W4291897433","https://openalex.org/W4223943233"],"abstract_inverted_index":{"Effectively":[0],"identifying":[1],"compound-protein":[2,107],"interactions":[3],"(CPIs)":[4],"is":[5,12],"crucial":[6],"for":[7,24,105,136,151,162],"new":[8],"drug":[9,18],"design,":[10],"which":[11,121],"an":[13,68,114],"important":[14],"step":[15],"in":[16,55,88],"silico":[17],"discovery.":[19],"Current":[20],"machine":[21],"learning":[22,117,152,174],"methods":[23],"CPI":[25,139,184],"prediction":[26,140],"mainly":[27],"use":[28],"one-demensional":[29],"(1D)":[30],"compound/protein":[31],"strings":[32],"and/or":[33],"the":[34,41,49,58,63,72,77,82,85,123,130,138,190],"specific":[35],"descriptors.":[36],"However,":[37],"they":[38,101],"often":[39],"ignore":[40],"fact":[42],"that":[43,54],"molecules":[44],"are":[45,74,95,102],"essentially":[46],"modeled":[47],"by":[48,110],"molecular":[50,64],"graph.":[51],"We":[52],"observe":[53],"real-world":[56],"scenarios,":[57],"topological":[59],"structure":[60],"information":[61,94,125],"of":[62,70,84,93,126,133,194],"graph":[65,148],"usually":[66],"provides":[67],"overview":[69],"how":[71],"atoms":[73],"connected,":[75],"and":[76,100,128,154,171,192],"local":[78],"chemical":[79,131],"context":[80,132],"reveals":[81],"functionality":[83],"protein":[86,134],"sequence":[87],"CPI.":[89],"These":[90],"two":[91],"types":[92],"complementary":[96],"to":[97],"each":[98],"other":[99],"both":[103],"significant":[104],"modeling":[106],"pairs.":[108],"Motivated":[109],"this,":[111],"we":[112,176],"propose":[113],"end-to-end":[115],"deep":[116,173],"framework":[118,143],"named":[119],"GraphCPI,":[120],"captures":[122],"structural":[124],"compounds":[127],"leverages":[129],"sequences":[135],"solving":[137],"task.":[141],"Our":[142],"can":[144],"integrate":[145],"any":[146],"popular":[147],"neural":[149,160],"networks":[150],"compounds,":[153],"it":[155],"combines":[156],"with":[157,169],"a":[158],"convolutional":[159],"network":[161],"embedding":[163],"sequences.":[164],"To":[165],"compare":[166],"our":[167,195],"method":[168],"classic":[170],"state-of-the-art":[172],"methods,":[175],"conduct":[177],"extensive":[178],"experiments":[179],"based":[180],"on":[181],"several":[182],"widely-used":[183],"datasets.":[185],"The":[186],"experimental":[187],"results":[188],"show":[189],"feasibility":[191],"competitiveness":[193],"proposed":[196],"method.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
