{"id":"https://openalex.org/W4285506641","doi":"https://doi.org/10.1109/tcbb.2022.3191392","title":"Explainable Drug Repurposing Approach From Biased Random Walks","display_name":"Explainable Drug Repurposing Approach From Biased Random Walks","publication_year":2022,"publication_date":"2022-07-15","ids":{"openalex":"https://openalex.org/W4285506641","doi":"https://doi.org/10.1109/tcbb.2022.3191392","pmid":"https://pubmed.ncbi.nlm.nih.gov/35839194"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2022.3191392","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2022.3191392","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/4359833/09831014.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ieeexplore.ieee.org/ielx7/8857/4359833/09831014.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010454141","display_name":"Filippo Castiglione","orcid":"https://orcid.org/0000-0002-1442-3552"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Filippo Castiglione","raw_affiliation_strings":["Institute for Applied Computing of the National Research Council (CNR&#x2013;IAC) of Italy, Rome, RM, Italy"],"raw_orcid":"https://orcid.org/0000-0002-1442-3552","affiliations":[{"raw_affiliation_string":"Institute for Applied Computing of the National Research Council (CNR&#x2013;IAC) of Italy, Rome, RM, Italy","institution_ids":["https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081542076","display_name":"Christine Nardini","orcid":"https://orcid.org/0000-0001-7601-321X"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Christine Nardini","raw_affiliation_strings":["Institute for Applied Computing of the National Research Council (CNR&#x2013;IAC) of Italy, Rome, RM, Italy"],"raw_orcid":"https://orcid.org/0000-0001-7601-321X","affiliations":[{"raw_affiliation_string":"Institute for Applied Computing of the National Research Council (CNR&#x2013;IAC) of Italy, Rome, RM, Italy","institution_ids":["https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035147508","display_name":"E. Onofri","orcid":"https://orcid.org/0000-0001-8391-2563"},"institutions":[{"id":"https://openalex.org/I119003972","display_name":"Roma Tre University","ror":"https://ror.org/05vf0dg29","country_code":"IT","type":"education","lineage":["https://openalex.org/I119003972"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Elia Onofri","raw_affiliation_strings":["Department of Mathematics and Physics, Roma Tre University, Roma, RM, Italy"],"raw_orcid":"https://orcid.org/0000-0001-8391-2563","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Physics, Roma Tre University, Roma, RM, Italy","institution_ids":["https://openalex.org/I119003972"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029371057","display_name":"Marco Pedicini","orcid":"https://orcid.org/0000-0002-9016-074X"},"institutions":[{"id":"https://openalex.org/I119003972","display_name":"Roma Tre University","ror":"https://ror.org/05vf0dg29","country_code":"IT","type":"education","lineage":["https://openalex.org/I119003972"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Pedicini","raw_affiliation_strings":["Department of Mathematics and Physics, Roma Tre University, Roma, RM, Italy"],"raw_orcid":"https://orcid.org/0000-0002-9016-074X","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Physics, Roma Tre University, Roma, RM, Italy","institution_ids":["https://openalex.org/I119003972"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007136874","display_name":"Paolo Tieri","orcid":"https://orcid.org/0000-0002-3635-7664"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Tieri","raw_affiliation_strings":["Institute for Applied Computing of the National Research Council (CNR&#x2013;IAC) of Italy, Rome, RM, Italy"],"raw_orcid":"https://orcid.org/0000-0002-3635-7664","affiliations":[{"raw_affiliation_string":"Institute for Applied Computing of the National Research Council (CNR&#x2013;IAC) of Italy, Rome, RM, Italy","institution_ids":["https://openalex.org/I4210155236"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.6268,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.63061786,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"20","issue":"2","first_page":"1009","last_page":"1019"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.6343661546707153},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5159454941749573},{"id":"https://openalex.org/keywords/random-walk","display_name":"Random walk","score":0.49000564217567444},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36749038100242615},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.2351548671722412},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22838467359542847},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11895808577537537},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.10383260250091553},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.06953361630439758}],"concepts":[{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.6343661546707153},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5159454941749573},{"id":"https://openalex.org/C121194460","wikidata":"https://www.wikidata.org/wiki/Q856741","display_name":"Random walk","level":2,"score":0.49000564217567444},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36749038100242615},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.2351548671722412},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22838467359542847},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11895808577537537},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.10383260250091553},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.06953361630439758}],"mesh":[{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008433","descriptor_name":"Mathematics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008433","descriptor_name":"Mathematics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008433","descriptor_name":"Mathematics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1109/tcbb.2022.3191392","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2022.3191392","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/4359833/09831014.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35839194","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35839194","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmh:oai:iris.uniroma3.it:11590/415847","is_oa":true,"landing_page_url":"https://hdl.handle.net/11590/415847","pdf_url":null,"source":{"id":"https://openalex.org/S4377196120","display_name":"Iris (Roma Tre University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I119003972","host_organization_name":"Roma Tre University","host_organization_lineage":["https://openalex.org/I119003972"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1109/tcbb.2022.3191392","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2022.3191392","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/4359833/09831014.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.5899999737739563,"display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320311030","display_name":"Istituto Nazionale di Alta Matematica \"Francesco Severi\"","ror":"https://ror.org/01vx64p53"},{"id":"https://openalex.org/F4320334080","display_name":"Gruppo Nazionale per la Fisica Matematica","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4285506641.pdf","grobid_xml":"https://content.openalex.org/works/W4285506641.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W90362830","https://openalex.org/W159435487","https://openalex.org/W1791881818","https://openalex.org/W1984054151","https://openalex.org/W1989590412","https://openalex.org/W2044692345","https://openalex.org/W2051614902","https://openalex.org/W2113072832","https://openalex.org/W2113542272","https://openalex.org/W2131562240","https://openalex.org/W2138512826","https://openalex.org/W2145578524","https://openalex.org/W2149381887","https://openalex.org/W2159583324","https://openalex.org/W2259538443","https://openalex.org/W2473876819","https://openalex.org/W2558586574","https://openalex.org/W2584983278","https://openalex.org/W2612436700","https://openalex.org/W2625819586","https://openalex.org/W2720897370","https://openalex.org/W2755623142","https://openalex.org/W2767891136","https://openalex.org/W2798884003","https://openalex.org/W2885549115","https://openalex.org/W2896002881","https://openalex.org/W2896829849","https://openalex.org/W2899138776","https://openalex.org/W2912978357","https://openalex.org/W2945526235","https://openalex.org/W2958089299","https://openalex.org/W2963703678","https://openalex.org/W2982291409","https://openalex.org/W2983166786","https://openalex.org/W2995752921","https://openalex.org/W2995908837","https://openalex.org/W3006508031","https://openalex.org/W3093194543","https://openalex.org/W3145846269","https://openalex.org/W3170745260","https://openalex.org/W3171954900","https://openalex.org/W3184467671","https://openalex.org/W3195937938","https://openalex.org/W6603694148","https://openalex.org/W6705380974","https://openalex.org/W6731801563","https://openalex.org/W6780583160"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4281673370","https://openalex.org/W4206422705","https://openalex.org/W2886266969","https://openalex.org/W4366527864","https://openalex.org/W2903687253","https://openalex.org/W2006667691","https://openalex.org/W1597743604","https://openalex.org/W2111662069","https://openalex.org/W3174741986"],"abstract_inverted_index":{"Drug":[0],"repurposing":[1,132],"is":[2,30,75,113,120],"a":[3,46,103],"highly":[4],"active":[5],"research":[6],"area,":[7],"aiming":[8],"at":[9],"finding":[10],"novel":[11,47],"uses":[12],"for":[13,20],"drugs":[14],"that":[15,110],"have":[16],"been":[17],"previously":[18],"developed":[19],"other":[21],"therapeutic":[22],"purposes.":[23],"Despite":[24],"the":[25,81,85,100,125,128],"flourishing":[26],"of":[27,80,102,127,130],"methodologies,":[28],"success":[29],"still":[31],"partial,":[32],"and":[33,60,99,119],"different":[34],"approaches":[35],"offer,":[36],"each,":[37],"peculiar":[38],"advantages.":[39],"In":[40],"this":[41],"composite":[42],"landscape,":[43],"we":[44],"present":[45],"methodology":[48],"focusing":[49],"on":[50,56,66,106],"an":[51],"efficient":[52],"mathematical":[53],"procedure":[54],"based":[55],"gene":[57],"similarity":[58],"scores":[59],"biased":[61],"random":[62,86],"walks":[63],"which":[64],"rely":[65],"robust":[67],"drug-gene-disease":[68],"association":[69],"data":[70],"sets.":[71],"The":[72],"recommendation":[73],"mechanism":[74],"further":[76],"unveiled":[77],"by":[78],"means":[79],"Markov":[82],"chain":[83],"underlying":[84],"walk":[87],"process,":[88],"hence":[89],"providing":[90,116],"explainability":[91],"about":[92],"how":[93],"findings":[94],"are":[95],"suggested.":[96],"Performances":[97],"evaluation":[98],"analysis":[101],"case":[104],"study":[105],"rheumatoid":[107],"arthritis":[108],"show":[109],"our":[111],"approach":[112],"accurate":[114],"in":[115],"useful":[117],"recommendations":[118],"computationally":[121],"efficient,":[122],"compared":[123],"to":[124],"state":[126],"art":[129],"drug":[131],"approaches.":[133]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2022,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
