{"id":"https://openalex.org/W4224315024","doi":"https://doi.org/10.1109/tcbb.2022.3173562","title":"LitMC-BERT: Transformer-Based Multi-Label Classification of Biomedical Literature With An Application on COVID-19 Literature Curation","display_name":"LitMC-BERT: Transformer-Based Multi-Label Classification of Biomedical Literature With An Application on COVID-19 Literature Curation","publication_year":2022,"publication_date":"2022-05-10","ids":{"openalex":"https://openalex.org/W4224315024","doi":"https://doi.org/10.1109/tcbb.2022.3173562","pmid":"https://pubmed.ncbi.nlm.nih.gov/35536809"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2022.3173562","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2022.3173562","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/9913693/09772374.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ieeexplore.ieee.org/ielx7/8857/9913693/09772374.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042874172","display_name":"Qingyu Chen","orcid":"https://orcid.org/0000-0002-6036-1516"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Qingyu Chen","raw_affiliation_strings":["National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, MD, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101190117","display_name":"Jingcheng Du","orcid":null},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jingcheng Du","raw_affiliation_strings":["School of Biomedical Informatics, UT Health, Houston, TX, USA"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, UT Health, Houston, TX, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022184805","display_name":"Alexis Allot","orcid":"https://orcid.org/0000-0002-2706-9054"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexis Allot","raw_affiliation_strings":["National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, MD, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083081872","display_name":"Zhiyong Lu","orcid":"https://orcid.org/0000-0001-9998-916X"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiyong Lu","raw_affiliation_strings":["National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, MD, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5042874172"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"],"apc_list":null,"apc_paid":null,"fwci":3.2929,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.93412146,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"19","issue":"5","first_page":"2584","last_page":"2595"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7294303774833679},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.6196630001068115},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.5878849029541016},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5833674669265747},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5587561130523682},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.5293724536895752},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4431777000427246},{"id":"https://openalex.org/keywords/baseline","display_name":"Baseline (sea)","score":0.4396298825740814},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43508657813072205},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.42806482315063477},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.42773306369781494},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3265305757522583},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10999232530593872},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.0741419792175293}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7294303774833679},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.6196630001068115},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.5878849029541016},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5833674669265747},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5587561130523682},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.5293724536895752},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4431777000427246},{"id":"https://openalex.org/C12725497","wikidata":"https://www.wikidata.org/wiki/Q810247","display_name":"Baseline (sea)","level":2,"score":0.4396298825740814},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43508657813072205},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42806482315063477},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.42773306369781494},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3265305757522583},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10999232530593872},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0741419792175293},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.0},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058873","descriptor_name":"Pandemics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/tcbb.2022.3173562","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2022.3173562","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/9913693/09772374.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:35536809","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35536809","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:9647722","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9647722","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE/ACM Trans Comput Biol Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1109/tcbb.2022.3173562","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2022.3173562","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/9913693/09772374.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.8199999928474426,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4224315024.pdf","grobid_xml":"https://content.openalex.org/works/W4224315024.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W1491576965","https://openalex.org/W1576514601","https://openalex.org/W1999954155","https://openalex.org/W2034269086","https://openalex.org/W2096951189","https://openalex.org/W2114315281","https://openalex.org/W2123579157","https://openalex.org/W2137484796","https://openalex.org/W2168905447","https://openalex.org/W2515248967","https://openalex.org/W2767245172","https://openalex.org/W2804823968","https://openalex.org/W2883255752","https://openalex.org/W2896457183","https://openalex.org/W2900758626","https://openalex.org/W2911489562","https://openalex.org/W2914171828","https://openalex.org/W2944400536","https://openalex.org/W2962739339","https://openalex.org/W2965851497","https://openalex.org/W2970231061","https://openalex.org/W2971258845","https://openalex.org/W2978017171","https://openalex.org/W2989987546","https://openalex.org/W3009926341","https://openalex.org/W3011296786","https://openalex.org/W3011499675","https://openalex.org/W3017463390","https://openalex.org/W3036605699","https://openalex.org/W3037129827","https://openalex.org/W3037426344","https://openalex.org/W3040692138","https://openalex.org/W3046375318","https://openalex.org/W3047932682","https://openalex.org/W3085973060","https://openalex.org/W3093259129","https://openalex.org/W3097438085","https://openalex.org/W3102503200","https://openalex.org/W3102793471","https://openalex.org/W3103184668","https://openalex.org/W3105753785","https://openalex.org/W3106092787","https://openalex.org/W3126293031","https://openalex.org/W3150641585","https://openalex.org/W3157132663","https://openalex.org/W3161987470","https://openalex.org/W4200445293","https://openalex.org/W4244393794","https://openalex.org/W4244771797","https://openalex.org/W4385245566","https://openalex.org/W6739901393","https://openalex.org/W6752178629","https://openalex.org/W6755207826","https://openalex.org/W6756600319","https://openalex.org/W6768851824","https://openalex.org/W6775071770","https://openalex.org/W6779959438","https://openalex.org/W6780541474","https://openalex.org/W6922433603"],"related_works":["https://openalex.org/W1657880117","https://openalex.org/W2595172197","https://openalex.org/W2127970246","https://openalex.org/W2084856301","https://openalex.org/W1001352512","https://openalex.org/W4382618745","https://openalex.org/W2885125400","https://openalex.org/W1989889224","https://openalex.org/W4287854475","https://openalex.org/W3186737058"],"abstract_inverted_index":{"The":[0,75,191],"rapid":[1,116],"growth":[2],"of":[3,27,40,89,111,182],"biomedical":[4,129],"literature":[5,25,117],"poses":[6],"a":[7,24,103,123,133],"significant":[8],"challenge":[9],"for":[10,87,137],"curation":[11,54,105],"and":[12,73,92,114,146,164,169,178,194],"interpretation.":[13],"This":[14,119],"has":[15,33,101],"become":[16],"more":[17],"evident":[18],"during":[19],"the":[20,109,112,115,139,147,173,183,187],"COVID-19":[21,28],"pandemic.":[22],"LitCovid,":[23],"database":[26],"related":[29,192],"papers":[30],"in":[31,56,83,128],"PubMed,":[32],"accumulated":[34],"over":[35],"200,000":[36],"articles":[37,45],"with":[38,66,155],"millions":[39],"accesses.":[41],"Approximately":[42],"10,000":[43],"new":[44],"are":[46,167,196],"added":[47],"to":[48,68,108],"LitCovid":[49,57,84],"every":[50],"month.":[51],"A":[52],"main":[53],"task":[55,113],"is":[58,64],"topic":[59],"annotation":[60],"where":[61],"an":[62],"article":[63],"assigned":[65],"up":[67],"eight":[69],"topics,":[70],"e.g.,":[71],"Treatment":[72],"Diagnosis.":[74],"annotated":[76],"topics":[77],"have":[78],"been":[79,102],"widely":[80],"used":[81],"both":[82],"(e.g.,":[85],"accounting":[86],"\u223c18%":[88,181],"total":[90],"uses)":[91],"downstream":[93],"studies":[94],"such":[95],"as":[96],"network":[97],"generation.":[98],"However,":[99],"it":[100],"primary":[104],"bottleneck":[106],"due":[107],"nature":[110],"growth.":[118],"study":[120],"proposes":[121],"LITMC-BERT,":[122],"transformer-based":[124],"multi-label":[125],"classification":[126],"method":[127],"literature.":[130],"It":[131],"uses":[132],"shared":[134],"transformer":[135],"backbone":[136],"all":[138],"labels":[140],"while":[141],"also":[142],"captures":[143],"label-specific":[144],"features":[145],"correlations":[148],"between":[149],"label":[150],"pairs.":[151],"We":[152],"compare":[153],"LITMC-BERT":[154],"three":[156],"baseline":[157],"models":[158,195],"on":[159],"two":[160],"datasets.":[161],"Its":[162],"micro-F1":[163],"instance-based":[165],"F1":[166],"5%":[168],"4%":[170],"higher":[171],"than":[172,186],"current":[174],"best":[175],"results,":[176],"respectively,":[177],"only":[179],"requires":[180],"inference":[184],"time":[185],"Binary":[188],"BERT":[189],"baseline.":[190],"datasets":[193],"available":[197],"via":[198],"https://github.com/ncbi/ml-transformer.":[199]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4}],"updated_date":"2026-03-31T07:56:22.981413","created_date":"2025-10-10T00:00:00"}
