{"id":"https://openalex.org/W4200350015","doi":"https://doi.org/10.1109/tcbb.2021.3138142","title":"Community Detection in Protein-Protein Interaction Networks and Applications","display_name":"Community Detection in Protein-Protein Interaction Networks and Applications","publication_year":2021,"publication_date":"2021-12-24","ids":{"openalex":"https://openalex.org/W4200350015","doi":"https://doi.org/10.1109/tcbb.2021.3138142","pmid":"https://pubmed.ncbi.nlm.nih.gov/34951849"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2021.3138142","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3138142","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083138771","display_name":"Ichcha Manipur","orcid":"https://orcid.org/0000-0001-5348-8378"},"institutions":[{"id":"https://openalex.org/I3005160176","display_name":"Institute for High Performance Computing and Networking","ror":"https://ror.org/04r5fge26","country_code":"IT","type":"facility","lineage":["https://openalex.org/I3005160176","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Ichcha Manipur","raw_affiliation_strings":["Institute for High-Performance Computing and Networking, National Research Council, Naples, Italy"],"raw_orcid":"https://orcid.org/0000-0001-5348-8378","affiliations":[{"raw_affiliation_string":"Institute for High-Performance Computing and Networking, National Research Council, Naples, Italy","institution_ids":["https://openalex.org/I3005160176","https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077760795","display_name":"Maurizio Giordano","orcid":"https://orcid.org/0000-0001-9917-7591"},"institutions":[{"id":"https://openalex.org/I3005160176","display_name":"Institute for High Performance Computing and Networking","ror":"https://ror.org/04r5fge26","country_code":"IT","type":"facility","lineage":["https://openalex.org/I3005160176","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Maurizio Giordano","raw_affiliation_strings":["Institute for High-Performance Computing and Networking, National Research Council, Naples, Italy"],"raw_orcid":"https://orcid.org/0000-0001-9917-7591","affiliations":[{"raw_affiliation_string":"Institute for High-Performance Computing and Networking, National Research Council, Naples, Italy","institution_ids":["https://openalex.org/I3005160176","https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067453270","display_name":"Marina Piccirillo","orcid":"https://orcid.org/0000-0001-8725-0579"},"institutions":[{"id":"https://openalex.org/I3005160176","display_name":"Institute for High Performance Computing and Networking","ror":"https://ror.org/04r5fge26","country_code":"IT","type":"facility","lineage":["https://openalex.org/I3005160176","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marina Piccirillo","raw_affiliation_strings":["Institute for High-Performance Computing and Networking, National Research Council, Naples, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for High-Performance Computing and Networking, National Research Council, Naples, Italy","institution_ids":["https://openalex.org/I3005160176","https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032703712","display_name":"Seetharaman Parashuraman","orcid":"https://orcid.org/0000-0001-5113-4592"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Seetharaman Parashuraman","raw_affiliation_strings":["Institute of Biochemistry and Cell Biology, National Research Council, Naples, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biochemistry and Cell Biology, National Research Council, Naples, Italy","institution_ids":["https://openalex.org/I4210155236"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035834348","display_name":"Lucia Maddalena","orcid":"https://orcid.org/0000-0002-0567-4624"},"institutions":[{"id":"https://openalex.org/I3005160176","display_name":"Institute for High Performance Computing and Networking","ror":"https://ror.org/04r5fge26","country_code":"IT","type":"facility","lineage":["https://openalex.org/I3005160176","https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Lucia Maddalena","raw_affiliation_strings":["Institute for High-Performance Computing and Networking, National Research Council, Naples, Italy"],"raw_orcid":"https://orcid.org/0000-0002-0567-4624","affiliations":[{"raw_affiliation_string":"Institute for High-Performance Computing and Networking, National Research Council, Naples, Italy","institution_ids":["https://openalex.org/I3005160176","https://openalex.org/I4210155236"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5083138771"],"corresponding_institution_ids":["https://openalex.org/I3005160176","https://openalex.org/I4210155236"],"apc_list":null,"apc_paid":null,"fwci":1.9542,"has_fulltext":false,"cited_by_count":52,"citation_normalized_percentile":{"value":0.87126702,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"20","issue":"1","first_page":"217","last_page":"237"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13127","display_name":"Biotin and Related Studies","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7223384380340576},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7079466581344604},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6472614407539368},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.637366533279419},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.48566973209381104},{"id":"https://openalex.org/keywords/protein-interaction-networks","display_name":"Protein Interaction Networks","score":0.4521127939224243},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.4255772531032562},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4118436574935913},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.36245492100715637},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34192919731140137},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20799553394317627},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11659306287765503}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7223384380340576},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7079466581344604},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6472614407539368},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.637366533279419},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.48566973209381104},{"id":"https://openalex.org/C2909613950","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Protein Interaction Networks","level":3,"score":0.4521127939224243},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.4255772531032562},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4118436574935913},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.36245492100715637},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34192919731140137},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20799553394317627},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11659306287765503},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015415","descriptor_name":"Biomarkers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2021.3138142","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3138142","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34951849","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34951849","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.46000000834465027,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":217,"referenced_works":["https://openalex.org/W92018061","https://openalex.org/W92592344","https://openalex.org/W109709570","https://openalex.org/W122143408","https://openalex.org/W133614916","https://openalex.org/W1057008042","https://openalex.org/W1485582261","https://openalex.org/W1529855236","https://openalex.org/W1530867863","https://openalex.org/W1558338825","https://openalex.org/W1600604896","https://openalex.org/W1644749979","https://openalex.org/W1759780789","https://openalex.org/W1820803539","https://openalex.org/W1876024155","https://openalex.org/W1968842724","https://openalex.org/W1971092174","https://openalex.org/W1971421925","https://openalex.org/W1973247012","https://openalex.org/W1976937534","https://openalex.org/W1977556410","https://openalex.org/W1979899431","https://openalex.org/W1985086849","https://openalex.org/W1986214964","https://openalex.org/W1987363726","https://openalex.org/W1989921625","https://openalex.org/W1996697843","https://openalex.org/W1997874979","https://openalex.org/W2000278950","https://openalex.org/W2005198909","https://openalex.org/W2007448777","https://openalex.org/W2007921075","https://openalex.org/W2015831832","https://openalex.org/W2032672182","https://openalex.org/W2033590892","https://openalex.org/W2046656611","https://openalex.org/W2047820333","https://openalex.org/W2050721857","https://openalex.org/W2056158214","https://openalex.org/W2056782561","https://openalex.org/W2057793636","https://openalex.org/W2062451863","https://openalex.org/W2062533676","https://openalex.org/W2066232588","https://openalex.org/W2072009200","https://openalex.org/W2072219058","https://openalex.org/W2074617510","https://openalex.org/W2074986735","https://openalex.org/W2076158096","https://openalex.org/W2077386490","https://openalex.org/W2081286432","https://openalex.org/W2082565035","https://openalex.org/W2082898796","https://openalex.org/W2086885665","https://openalex.org/W2087240661","https://openalex.org/W2088891952","https://openalex.org/W2090422756","https://openalex.org/W2091202730","https://openalex.org/W2093830031","https://openalex.org/W2095319945","https://openalex.org/W2098946845","https://openalex.org/W2101725042","https://openalex.org/W2106474670","https://openalex.org/W2107830215","https://openalex.org/W2107953475","https://openalex.org/W2108498827","https://openalex.org/W2109953984","https://openalex.org/W2110553827","https://openalex.org/W2110711069","https://openalex.org/W2111827030","https://openalex.org/W2112796928","https://openalex.org/W2112811019","https://openalex.org/W2116117181","https://openalex.org/W2116447934","https://openalex.org/W2116531018","https://openalex.org/W2117412805","https://openalex.org/W2118607021","https://openalex.org/W2121564430","https://openalex.org/W2122538988","https://openalex.org/W2122964432","https://openalex.org/W2123067205","https://openalex.org/W2124166542","https://openalex.org/W2124209874","https://openalex.org/W2125673723","https://openalex.org/W2126924893","https://openalex.org/W2131161884","https://openalex.org/W2131323902","https://openalex.org/W2133916450","https://openalex.org/W2134046693","https://openalex.org/W2134088225","https://openalex.org/W2134695923","https://openalex.org/W2135098204","https://openalex.org/W2135512436","https://openalex.org/W2136549265","https://openalex.org/W2136850043","https://openalex.org/W2137917513","https://openalex.org/W2138003801","https://openalex.org/W2138582694","https://openalex.org/W2139867489","https://openalex.org/W2140280811","https://openalex.org/W2140462113","https://openalex.org/W2140699409","https://openalex.org/W2140937045","https://openalex.org/W2141144378","https://openalex.org/W2146653758","https://openalex.org/W2149491227","https://openalex.org/W2152486860","https://openalex.org/W2152495216","https://openalex.org/W2153768000","https://openalex.org/W2154851992","https://openalex.org/W2155330008","https://openalex.org/W2155968618","https://openalex.org/W2156223899","https://openalex.org/W2159675211","https://openalex.org/W2160313295","https://openalex.org/W2163487866","https://openalex.org/W2165232124","https://openalex.org/W2165533101","https://openalex.org/W2166344835","https://openalex.org/W2167869241","https://openalex.org/W2168115215","https://openalex.org/W2171030481","https://openalex.org/W2171662214","https://openalex.org/W2218251102","https://openalex.org/W2254563062","https://openalex.org/W2263739890","https://openalex.org/W2281778589","https://openalex.org/W2330042283","https://openalex.org/W2345470764","https://openalex.org/W2393319904","https://openalex.org/W2403079677","https://openalex.org/W2417225937","https://openalex.org/W2536862554","https://openalex.org/W2565012715","https://openalex.org/W2600345370","https://openalex.org/W2606309320","https://openalex.org/W2610530925","https://openalex.org/W2611573275","https://openalex.org/W2619358879","https://openalex.org/W2622489478","https://openalex.org/W2624170234","https://openalex.org/W2725075778","https://openalex.org/W2737623232","https://openalex.org/W2738942170","https://openalex.org/W2739852640","https://openalex.org/W2742668591","https://openalex.org/W2765839756","https://openalex.org/W2766043538","https://openalex.org/W2774282849","https://openalex.org/W2775711943","https://openalex.org/W2780577559","https://openalex.org/W2789631796","https://openalex.org/W2793731617","https://openalex.org/W2799351678","https://openalex.org/W2799579300","https://openalex.org/W2801069509","https://openalex.org/W2803454287","https://openalex.org/W2808606536","https://openalex.org/W2810304836","https://openalex.org/W2884682196","https://openalex.org/W2887783895","https://openalex.org/W2888710868","https://openalex.org/W2889626364","https://openalex.org/W2891871137","https://openalex.org/W2892692685","https://openalex.org/W2905614462","https://openalex.org/W2908670560","https://openalex.org/W2912312581","https://openalex.org/W2916879436","https://openalex.org/W2918402879","https://openalex.org/W2918659882","https://openalex.org/W2919115771","https://openalex.org/W2920964798","https://openalex.org/W2921853542","https://openalex.org/W2939191975","https://openalex.org/W2943927267","https://openalex.org/W2944423813","https://openalex.org/W2945262871","https://openalex.org/W2949184913","https://openalex.org/W2949571777","https://openalex.org/W2951271819","https://openalex.org/W2962756421","https://openalex.org/W2965506096","https://openalex.org/W2966787003","https://openalex.org/W2967600042","https://openalex.org/W2970771711","https://openalex.org/W2972580493","https://openalex.org/W2973129733","https://openalex.org/W2978950048","https://openalex.org/W2981958531","https://openalex.org/W2990180888","https://openalex.org/W2997574889","https://openalex.org/W2998486352","https://openalex.org/W3005336815","https://openalex.org/W3006330121","https://openalex.org/W3011072970","https://openalex.org/W3011565989","https://openalex.org/W3012267228","https://openalex.org/W3014627446","https://openalex.org/W3018708983","https://openalex.org/W3022285953","https://openalex.org/W3042004567","https://openalex.org/W3044160005","https://openalex.org/W3094794988","https://openalex.org/W3104097132","https://openalex.org/W3121027314","https://openalex.org/W3126033509","https://openalex.org/W3127451872","https://openalex.org/W3157802818","https://openalex.org/W3158868742","https://openalex.org/W3197265772","https://openalex.org/W4322614756","https://openalex.org/W6635873800","https://openalex.org/W6678914141","https://openalex.org/W6681096077","https://openalex.org/W6730084236","https://openalex.org/W6770542016"],"related_works":["https://openalex.org/W2414873431","https://openalex.org/W2172097289","https://openalex.org/W4384303460","https://openalex.org/W1987363726","https://openalex.org/W82005175","https://openalex.org/W2146108849","https://openalex.org/W2145100112","https://openalex.org/W2586268529","https://openalex.org/W4287510099","https://openalex.org/W1841073402"],"abstract_inverted_index":{"The":[0],"ability":[1],"to":[2,108,129,179],"identify":[3],"and":[4,51,55,76,126,132,143,157,170,182,191,198],"characterize":[5],"not":[6],"only":[7],"the":[8,24,30,34,37,45,71,112,118,121,146,164,174],"protein-protein":[9,80],"interactions":[10],"but":[11],"also":[12,83,104],"their":[13],"internal":[14],"modular":[15],"organization":[16],"through":[17],"network":[18,38],"analysis":[19],"is":[20],"fundamental":[21],"for":[22,70,101,154],"understanding":[23,43],"mechanisms":[25],"of":[26,36,44,48,66,73,89,97,120,148,151,173],"biological":[27],"processes":[28,153],"at":[29],"molecular":[31,46],"level.":[32],"Indeed,":[33],"detection":[35,72,197],"communities":[39],"can":[40],"enhance":[41],"our":[42],"basis":[47],"disease":[49,56,152],"pathology,":[50],"promote":[52],"drug":[53],"discovery":[54],"treatment":[57],"in":[58,79,145,195],"personalized":[59],"medicine.":[60],"This":[61],"work":[62],"gives":[63],"an":[64,168],"overview":[65],"recent":[67,114,138],"computational":[68],"methods":[69],"protein":[74],"complexes":[75],"functional":[77],"modules":[78],"interaction":[81],"networks,":[82],"providing":[84],"a":[85,94,149],"focus":[86],"on":[87,188],"some":[88],"its":[90,199],"applications.":[91,200],"We":[92,116],"propose":[93],"systematic":[95],"reformulation":[96],"frequently":[98],"adopted":[99],"taxonomies":[100],"these":[102],"methods,":[103],"proposing":[105],"new":[106],"categories":[107],"keep":[109],"up":[110],"with":[111,167,177],"most":[113],"research.":[115],"review":[117,162],"literature":[119,181],"last":[122],"five":[123],"years":[124],"(2017-2021)":[125],"provide":[127],"links":[128,178],"existing":[130,175],"data":[131],"software":[133],"resources.":[134],"Finally,":[135],"we":[136],"survey":[137],"works":[139],"exploiting":[140],"module":[141],"identification":[142,156],"analysis,":[144],"context":[147],"variety":[150],"biomarker":[155],"therapeutic":[158],"target":[159],"detection.":[160],"Our":[161],"provides":[163],"interested":[165],"reader":[166],"up-to-date":[169],"self-contained":[171],"view":[172],"research,":[176],"state-of-the-art":[180],"resources,":[183],"as":[184,186],"well":[185],"hints":[187],"open":[189],"issues":[190],"future":[192],"research":[193],"directions":[194],"complex":[196]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":22},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":2}],"updated_date":"2026-05-12T08:28:47.272897","created_date":"2025-10-10T00:00:00"}
