{"id":"https://openalex.org/W4200551502","doi":"https://doi.org/10.1109/tcbb.2021.3136792","title":"CD-MAWS: An Alignment-Free Phylogeny Estimation Method Using Cosine Distance on Minimal Absent Word Sets","display_name":"CD-MAWS: An Alignment-Free Phylogeny Estimation Method Using Cosine Distance on Minimal Absent Word Sets","publication_year":2021,"publication_date":"2021-12-20","ids":{"openalex":"https://openalex.org/W4200551502","doi":"https://doi.org/10.1109/tcbb.2021.3136792","pmid":"https://pubmed.ncbi.nlm.nih.gov/34928803"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2021.3136792","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3136792","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047693775","display_name":"Naser A. Anjum","orcid":"https://orcid.org/0000-0001-9953-0703"},"institutions":[{"id":"https://openalex.org/I183697816","display_name":"Bangladesh University of Engineering and Technology","ror":"https://ror.org/05a1qpv97","country_code":"BD","type":"education","lineage":["https://openalex.org/I183697816"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Naser Anjum","raw_affiliation_strings":["Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh","institution_ids":["https://openalex.org/I183697816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089885156","display_name":"Raian Latif Nabil","orcid":null},"institutions":[{"id":"https://openalex.org/I183697816","display_name":"Bangladesh University of Engineering and Technology","ror":"https://ror.org/05a1qpv97","country_code":"BD","type":"education","lineage":["https://openalex.org/I183697816"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Raian Latif Nabil","raw_affiliation_strings":["Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh","institution_ids":["https://openalex.org/I183697816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006737730","display_name":"Rakibul Islam Rafi","orcid":null},"institutions":[{"id":"https://openalex.org/I183697816","display_name":"Bangladesh University of Engineering and Technology","ror":"https://ror.org/05a1qpv97","country_code":"BD","type":"education","lineage":["https://openalex.org/I183697816"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Rakibul Islam Rafi","raw_affiliation_strings":["Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh","institution_ids":["https://openalex.org/I183697816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063693993","display_name":"Md. Shamsuzzoha Bayzid","orcid":"https://orcid.org/0000-0002-5640-0615"},"institutions":[{"id":"https://openalex.org/I183697816","display_name":"Bangladesh University of Engineering and Technology","ror":"https://ror.org/05a1qpv97","country_code":"BD","type":"education","lineage":["https://openalex.org/I183697816"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"Md. Shamsuzzoha Bayzid","raw_affiliation_strings":["Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh","institution_ids":["https://openalex.org/I183697816"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100733249","display_name":"Mohammad Saifur Rahman","orcid":"https://orcid.org/0000-0002-9887-4456"},"institutions":[{"id":"https://openalex.org/I183697816","display_name":"Bangladesh University of Engineering and Technology","ror":"https://ror.org/05a1qpv97","country_code":"BD","type":"education","lineage":["https://openalex.org/I183697816"]}],"countries":["BD"],"is_corresponding":false,"raw_author_name":"M. Saifur Rahman","raw_affiliation_strings":["Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh"],"raw_orcid":"https://orcid.org/0000-0002-9887-4456","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Bangladesh University of Engineering and Technology, Dhaka, Bangladesh","institution_ids":["https://openalex.org/I183697816"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I183697816"],"apc_list":null,"apc_paid":null,"fwci":0.2221,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.5013957,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"20","issue":"1","first_page":"196","last_page":"205"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6835391521453857},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6101159453392029},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5413645505905151},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.5260484218597412},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5235169529914856},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.5091156363487244},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.49910831451416016},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.49648529291152954},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4751417636871338},{"id":"https://openalex.org/keywords/trigonometric-functions","display_name":"Trigonometric functions","score":0.4527859091758728},{"id":"https://openalex.org/keywords/divergence","display_name":"Divergence (linguistics)","score":0.4519318640232086},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.4431377053260803},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4317512512207031},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.392845094203949},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.33640429377555847},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30437737703323364},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2885751724243164},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2660355567932129},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2579457461833954},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16331613063812256},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.06654682755470276}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6835391521453857},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6101159453392029},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5413645505905151},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.5260484218597412},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5235169529914856},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.5091156363487244},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.49910831451416016},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49648529291152954},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4751417636871338},{"id":"https://openalex.org/C178009071","wikidata":"https://www.wikidata.org/wiki/Q93344","display_name":"Trigonometric functions","level":2,"score":0.4527859091758728},{"id":"https://openalex.org/C207390915","wikidata":"https://www.wikidata.org/wiki/Q1230525","display_name":"Divergence (linguistics)","level":2,"score":0.4519318640232086},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.4431377053260803},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4317512512207031},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.392845094203949},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.33640429377555847},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30437737703323364},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2885751724243164},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2660355567932129},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2579457461833954},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16331613063812256},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.06654682755470276},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017421","descriptor_name":"Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2021.3136792","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3136792","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34928803","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34928803","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.4699999988079071,"display_name":"Life below water"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":64,"referenced_works":["https://openalex.org/W17481062","https://openalex.org/W1550721780","https://openalex.org/W1764956874","https://openalex.org/W1774945547","https://openalex.org/W1795489290","https://openalex.org/W1868674098","https://openalex.org/W1968363797","https://openalex.org/W1971248947","https://openalex.org/W1975775747","https://openalex.org/W1983002447","https://openalex.org/W1997945171","https://openalex.org/W2006075770","https://openalex.org/W2015696044","https://openalex.org/W2032178155","https://openalex.org/W2044621597","https://openalex.org/W2055693471","https://openalex.org/W2056251063","https://openalex.org/W2058896194","https://openalex.org/W2063751049","https://openalex.org/W2075847813","https://openalex.org/W2084206663","https://openalex.org/W2095071222","https://openalex.org/W2097706568","https://openalex.org/W2098475202","https://openalex.org/W2100945839","https://openalex.org/W2101464940","https://openalex.org/W2112821341","https://openalex.org/W2114504162","https://openalex.org/W2116868014","https://openalex.org/W2119488386","https://openalex.org/W2120771433","https://openalex.org/W2125359798","https://openalex.org/W2137015675","https://openalex.org/W2139736670","https://openalex.org/W2141865968","https://openalex.org/W2145155821","https://openalex.org/W2145608399","https://openalex.org/W2149792928","https://openalex.org/W2150392267","https://openalex.org/W2150774511","https://openalex.org/W2151602856","https://openalex.org/W2161973008","https://openalex.org/W2170157248","https://openalex.org/W2229908198","https://openalex.org/W2311179366","https://openalex.org/W2335912851","https://openalex.org/W2488148959","https://openalex.org/W2519525355","https://openalex.org/W2568830712","https://openalex.org/W2607082035","https://openalex.org/W2756169797","https://openalex.org/W2761430568","https://openalex.org/W2775498959","https://openalex.org/W2805439715","https://openalex.org/W2890896831","https://openalex.org/W2950150251","https://openalex.org/W2953328352","https://openalex.org/W2962807110","https://openalex.org/W2987650093","https://openalex.org/W2991805664","https://openalex.org/W3006459350","https://openalex.org/W3090941966","https://openalex.org/W3100708393","https://openalex.org/W4319587689"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2133116680","https://openalex.org/W2111937814","https://openalex.org/W2141411672","https://openalex.org/W2091678889","https://openalex.org/W1482324242","https://openalex.org/W187239587","https://openalex.org/W2730968108","https://openalex.org/W4386770652","https://openalex.org/W2158700816"],"abstract_inverted_index":{"Multiple":[0],"sequence":[1,12,48,93,122],"alignment":[2],"has":[3],"been":[4,52],"the":[5,24,34,44,55,111],"traditional":[6],"and":[7,14,20,70,78,144,147,166,186],"well":[8],"established":[9,53],"approach":[10],"of":[11,26,36,91,110],"analysis":[13,49,123],"comparison,":[15],"though":[16],"it":[17,149],"is":[18,29,42,84],"time":[19],"memory":[21],"consuming.":[22],"As":[23],"scale":[25],"sequencing":[27],"data":[28,66],"increasing":[30],"day":[31],"by":[32],"day,":[33],"importance":[35],"faster":[37],"yet":[38],"accurate":[39],"alignment-free":[40,47,96,179],"methods":[41,50,180],"on":[43,108,155],"rise.":[45],"Several":[46],"have":[51,130],"in":[54,57,94,124],"literature":[56],"recent":[58],"years,":[59],"which":[60],"extract":[61],"numerical":[62],"features":[63],"from":[64],"genomic":[65],"to":[67,72,150,174],"analyze":[68],"sequences":[69],"also":[71],"estimate":[73],"phylogenetic":[74,171],"relationship":[75],"among":[76],"genes":[77],"species.":[79],"Minimal":[80],"Absent":[81],"Word":[82],"(MAW)":[83],"an":[85,95],"effective":[86],"concept":[87],"for":[88,121],"representing":[89],"characteristics":[90],"a":[92,104,125],"manner.":[97,128],"In":[98],"this":[99],"study,":[100],"we":[101],"present":[102],"CD-MAWS,":[103],"distance":[105],"measure":[106],"based":[107],"cosine":[109],"angle":[112],"between":[113],"composition":[114],"vectors":[115],"constructed":[116],"using":[117,133],"minimal":[118],"absent":[119],"words,":[120],"computationally":[126],"inexpensive":[127],"We":[129],"benchmarked":[131],"CD-MAWS":[132,169],"several":[134,156],"AFProject":[135],"datasets,":[136,146],"such":[137,160,181],"as":[138,161,182],"Fish":[139],"mtDNA,":[140,163],"E.coli,":[141],"Plants,":[142],"Shigella":[143],"Yersinia":[145],"found":[148],"perform":[151],"quite":[152],"well.":[153],"Applied":[154],"other":[157],"biological":[158],"datasets":[159],"mammal":[162],"bacterial":[164],"genomes":[165],"viral":[167],"genomes,":[168],"resolved":[170],"relationships":[172],"similar":[173],"or":[175],"better":[176],"than":[177],"state-of-the-art":[178],"Mash,":[183],"Skmer,":[184],"Co-phylog":[185],"kSNP3.":[187]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-07-30T17:31:21.811387","created_date":"2025-10-10T00:00:00"}
