{"id":"https://openalex.org/W4200462331","doi":"https://doi.org/10.1109/tcbb.2021.3132611","title":"Multi-View Feature Aggregation for Predicting Microbe-Disease Association","display_name":"Multi-View Feature Aggregation for Predicting Microbe-Disease Association","publication_year":2021,"publication_date":"2021-12-06","ids":{"openalex":"https://openalex.org/W4200462331","doi":"https://doi.org/10.1109/tcbb.2021.3132611","pmid":"https://pubmed.ncbi.nlm.nih.gov/34871177"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2021.3132611","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3132611","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053073532","display_name":"Wei Peng","orcid":"https://orcid.org/0000-0002-9572-951X"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Peng","raw_affiliation_strings":["Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, Yunnan, China"],"raw_orcid":"https://orcid.org/0000-0002-9572-951X","affiliations":[{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, Yunnan, China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100773527","display_name":"Ming Liu","orcid":"https://orcid.org/0000-0003-0998-4221"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming Liu","raw_affiliation_strings":["Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, Yunnan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, Yunnan, China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100752235","display_name":"Wei Dai","orcid":"https://orcid.org/0000-0002-3093-6454"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Dai","raw_affiliation_strings":["Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, Yunnan, China"],"raw_orcid":"https://orcid.org/0000-0002-3093-6454","affiliations":[{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, Yunnan, China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028021053","display_name":"Tielin Chen","orcid":"https://orcid.org/0000-0003-2401-4944"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tielin Chen","raw_affiliation_strings":["Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, Yunnan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, Yunnan, China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032972088","display_name":"Yu Fu","orcid":"https://orcid.org/0000-0001-8767-6035"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Fu","raw_affiliation_strings":["Medical school, Kunming University of Science and Technology Kunming, Kunming, Yunnan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical school, Kunming University of Science and Technology Kunming, Kunming, Yunnan, China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101465265","display_name":"Yi Pan","orcid":"https://orcid.org/0000-0002-2766-3096"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi Pan","raw_affiliation_strings":["Department of Computer Science, Georgia State University, Atlanta, GA, USA"],"raw_orcid":"https://orcid.org/0000-0002-2766-3096","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I181565077"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.7447,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.67731892,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"20","issue":"5","first_page":"2748","last_page":"2758"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11667","display_name":"Advanced Chemical Sensor Technologies","score":0.9674000144004822,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11667","display_name":"Advanced Chemical Sensor Technologies","score":0.9674000144004822,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10640","display_name":"Spectroscopy and Chemometric Analyses","score":0.9210000038146973,"subfield":{"id":"https://openalex.org/subfields/1602","display_name":"Analytical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9133999943733215,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.7391029000282288},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.6012634038925171},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4696487784385681},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.38263607025146484},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3262982964515686},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2799394130706787},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.19207227230072021},{"id":"https://openalex.org/keywords/philosophy","display_name":"Philosophy","score":0.1320458948612213},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.1104537844657898},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.09363946318626404},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.044914186000823975}],"concepts":[{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.7391029000282288},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.6012634038925171},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4696487784385681},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.38263607025146484},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3262982964515686},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2799394130706787},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.19207227230072021},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.1320458948612213},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.1104537844657898},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.09363946318626404},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.044914186000823975}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2021.3132611","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3132611","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34871177","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34871177","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.4300000071525574,"display_name":"Good health and well-being"}],"awards":[{"id":"https://openalex.org/G2601088333","display_name":"\u57fa\u4e8e\u5f02\u8d28\u5c5e\u6027\u7f51\u7edc\u8868\u5f81\u5b66\u4e60\u7684\u8bc6\u522b\u764c\u75c7\u9a71\u52a8\u57fa\u56e0\u7b97\u6cd5\u7814\u7a76","funder_award_id":"61972185","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3624512995","display_name":"tACS\u4e0etDCS\uff08\u7ecf\u9885\u7535\u523a\u6fc0\uff09\u5bf9\u963f\u5c14\u8328\u6d77\u9ed8\u75c5\u8fdb\u7a0b\u7684\u5e72\u9884\u53ca\u673a\u5236\u7814\u7a76","funder_award_id":"81760258","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7073027373","display_name":null,"funder_award_id":"2018IA054","funder_id":"https://openalex.org/F4320327808","funder_display_name":"Yunnan Key Research and Development Program"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320327808","display_name":"Yunnan Key Research and Development Program","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1680085838","https://openalex.org/W1964027278","https://openalex.org/W2051567523","https://openalex.org/W2060915038","https://openalex.org/W2121953083","https://openalex.org/W2156387975","https://openalex.org/W2322763599","https://openalex.org/W2531339188","https://openalex.org/W2583889943","https://openalex.org/W2623187693","https://openalex.org/W2739664659","https://openalex.org/W2765928324","https://openalex.org/W2770944581","https://openalex.org/W2805442283","https://openalex.org/W2892502396","https://openalex.org/W2898769300","https://openalex.org/W2901312953","https://openalex.org/W2913882083","https://openalex.org/W2922817064","https://openalex.org/W2963703618","https://openalex.org/W2995906733","https://openalex.org/W3015492777","https://openalex.org/W3017779111","https://openalex.org/W3045879648","https://openalex.org/W3048259272","https://openalex.org/W3084643070","https://openalex.org/W3103443653","https://openalex.org/W3119762536","https://openalex.org/W3120403132","https://openalex.org/W3126396849","https://openalex.org/W3126516421","https://openalex.org/W4240113898","https://openalex.org/W4241442281","https://openalex.org/W6682889407","https://openalex.org/W6743446608"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"Microbes":[0],"play":[1],"a":[2,45,64,88,106,134],"crucial":[3],"role":[4],"in":[5,23,184],"human":[6,167],"health":[7],"and":[8,16,34,55,76,120,148,189,203,220],"disease.":[9],"Figuring":[10],"out":[11],"the":[12,53,99,116,127,140,149,156,181,208],"relationship":[13],"between":[14,118],"microbes":[15,121],"diseases":[17,75,119],"leads":[18],"to":[19,31,58,70,138,154,165],"significant":[20],"potential":[21],"applications":[22],"disease":[24],"treatments.":[25],"It":[26],"is":[27,95],"an":[28],"urgent":[29],"need":[30],"devise":[32],"robust":[33],"effective":[35],"computational":[36],"methods":[37],"for":[38,74,192],"identifying":[39],"disease-related":[40,60],"microbes.":[41,61,77,194],"This":[42],"work":[43],"proposes":[44],"Multi-View":[46],"Feature":[47],"Aggregation":[48],"(MVFA)":[49],"scheme":[50],"that":[51,176,199],"integrates":[52],"linear":[54,72,84,103,202],"nonlinear":[56,93,204],"features":[57,73,104,114,205],"identify":[59],"We":[62,161],"introduce":[63],"non-negative":[65],"matrix":[66],"tri-factorization":[67],"(NMTF)":[68],"model":[69,137,142,146,179],"extract":[71],"Then":[78],"we":[79,132],"learn":[80],"another":[81],"type":[82],"of":[83,102,113,129],"feature":[85,94],"by":[86,97],"utilizing":[87],"bi-random":[89,144],"walk":[90,145],"model.":[91],"The":[92,195],"obtained":[96],"inputting":[98],"two":[100,171,214],"kinds":[101],"into":[105],"capsule":[107,150],"neural":[108,151],"network.":[109],"These":[110],"three":[111],"types":[112],"describe":[115],"associations":[117,169,188,191],"from":[122],"different":[123],"views.":[124],"Finally,":[125],"considering":[126],"complementary":[128],"these":[130],"features,":[131],"leverage":[133],"logistic":[135],"regression":[136],"combine":[139],"NMTF":[141],"predictions,":[143,147],"network":[152],"predictions":[153],"obtain":[155],"final":[157],"microbe-disease":[158,168,187],"pair":[159],"scores.":[160],"apply":[162],"our":[163,177,225],"method":[164,226],"predict":[166],"on":[170,213],"datasets.":[172],"Experimental":[173],"results":[174],"show":[175],"multi-view":[178,201],"outperforms":[180],"state-of-the-art":[182],"models":[183],"recovering":[185],"missing":[186],"predicting":[190],"new":[193],"ablation":[196],"study":[197],"shows":[198],"aggregating":[200],"can":[206],"improve":[207],"prediction":[209],"performance.":[210],"Case":[211],"studies":[212],"diseases,":[215],"i.e.":[216],"Type":[217],"1":[218],"diabetes":[219],"Liver":[221],"cirrhosis,":[222],"further":[223],"validate":[224],"effectiveness.":[227]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":5}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
