{"id":"https://openalex.org/W3210154983","doi":"https://doi.org/10.1109/tcbb.2021.3123269","title":"Protein-Protein Interaction Sites Prediction Based on an Under-Sampling Strategy and Random Forest Algorithm","display_name":"Protein-Protein Interaction Sites Prediction Based on an Under-Sampling Strategy and Random Forest Algorithm","publication_year":2021,"publication_date":"2021-10-27","ids":{"openalex":"https://openalex.org/W3210154983","doi":"https://doi.org/10.1109/tcbb.2021.3123269","mag":"3210154983","pmid":"https://pubmed.ncbi.nlm.nih.gov/34705656"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2021.3123269","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3123269","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107772243","display_name":"Minjie Li","orcid":"https://orcid.org/0000-0002-4388-7479"},"institutions":[{"id":"https://openalex.org/I92178344","display_name":"Anhui University of Technology","ror":"https://ror.org/02qdtrq21","country_code":"CN","type":"education","lineage":["https://openalex.org/I92178344"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Minjie Li","raw_affiliation_strings":["Anhui Province Key Laboratory of Special and Heavy Load Robot, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China"],"affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Special and Heavy Load Robot, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China","institution_ids":["https://openalex.org/I92178344"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012760333","display_name":"Ziheng Wu","orcid":"https://orcid.org/0000-0003-4633-6012"},"institutions":[{"id":"https://openalex.org/I92178344","display_name":"Anhui University of Technology","ror":"https://ror.org/02qdtrq21","country_code":"CN","type":"education","lineage":["https://openalex.org/I92178344"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziheng Wu","raw_affiliation_strings":["Anhui Province Key Laboratory of Special and Heavy Load Robot, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China"],"affiliations":[{"raw_affiliation_string":"Anhui Province Key Laboratory of Special and Heavy Load Robot, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China","institution_ids":["https://openalex.org/I92178344"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100754694","display_name":"Wenyan Wang","orcid":"https://orcid.org/0000-0001-8182-7349"},"institutions":[{"id":"https://openalex.org/I92178344","display_name":"Anhui University of Technology","ror":"https://ror.org/02qdtrq21","country_code":"CN","type":"education","lineage":["https://openalex.org/I92178344"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenyan Wang","raw_affiliation_strings":["Key Laboratory of Power Electronics and Motion Control Anhui Education Department, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Power Electronics and Motion Control Anhui Education Department, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China","institution_ids":["https://openalex.org/I92178344"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100668529","display_name":"Kun Lu","orcid":null},"institutions":[{"id":"https://openalex.org/I92178344","display_name":"Anhui University of Technology","ror":"https://ror.org/02qdtrq21","country_code":"CN","type":"education","lineage":["https://openalex.org/I92178344"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kun Lu","raw_affiliation_strings":["Key Laboratory of Power Electronics and Motion Control Anhui Education Department, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Power Electronics and Motion Control Anhui Education Department, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China","institution_ids":["https://openalex.org/I92178344"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100433177","display_name":"Jun Zhang","orcid":"https://orcid.org/0000-0002-5842-7424"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["School of Electrical Engineering and Automation, Anhui University, Hefei, Anhui, China"],"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering and Automation, Anhui University, Hefei, Anhui, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031391841","display_name":"Yuming Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I92178344","display_name":"Anhui University of Technology","ror":"https://ror.org/02qdtrq21","country_code":"CN","type":"education","lineage":["https://openalex.org/I92178344"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuming Zhou","raw_affiliation_strings":["School of Electrical &amp; Information Engineering, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China"],"affiliations":[{"raw_affiliation_string":"School of Electrical &amp; Information Engineering, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China","institution_ids":["https://openalex.org/I92178344"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020994297","display_name":"Zhaoquan Chen","orcid":"https://orcid.org/0000-0001-6352-8281"},"institutions":[{"id":"https://openalex.org/I92178344","display_name":"Anhui University of Technology","ror":"https://ror.org/02qdtrq21","country_code":"CN","type":"education","lineage":["https://openalex.org/I92178344"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhaoquan Chen","raw_affiliation_strings":["School of Electrical &amp; Information Engineering, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China"],"affiliations":[{"raw_affiliation_string":"School of Electrical &amp; Information Engineering, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China","institution_ids":["https://openalex.org/I92178344"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100380671","display_name":"Dan Li","orcid":"https://orcid.org/0000-0001-7351-5548"},"institutions":[{"id":"https://openalex.org/I92178344","display_name":"Anhui University of Technology","ror":"https://ror.org/02qdtrq21","country_code":"CN","type":"education","lineage":["https://openalex.org/I92178344"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dan Li","raw_affiliation_strings":["School of Electrical &amp; Information Engineering, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China"],"affiliations":[{"raw_affiliation_string":"School of Electrical &amp; Information Engineering, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China","institution_ids":["https://openalex.org/I92178344"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076520311","display_name":"Shicheng Zheng","orcid":"https://orcid.org/0009-0001-9234-0189"},"institutions":[{"id":"https://openalex.org/I92178344","display_name":"Anhui University of Technology","ror":"https://ror.org/02qdtrq21","country_code":"CN","type":"education","lineage":["https://openalex.org/I92178344"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shicheng Zheng","raw_affiliation_strings":["School of Electrical &amp; Information Engineering, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China"],"affiliations":[{"raw_affiliation_string":"School of Electrical &amp; Information Engineering, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China","institution_ids":["https://openalex.org/I92178344"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100629119","display_name":"Peng Chen","orcid":"https://orcid.org/0000-0002-5810-8159"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Chen","raw_affiliation_strings":["Institutes of Physical Science and Information Technology and School of Internet, Anhui University, Hefei, Anhui, China"],"affiliations":[{"raw_affiliation_string":"Institutes of Physical Science and Information Technology and School of Internet, Anhui University, Hefei, Anhui, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100382568","display_name":"Bing Wang","orcid":"https://orcid.org/0000-0003-4945-7725"},"institutions":[{"id":"https://openalex.org/I92178344","display_name":"Anhui University of Technology","ror":"https://ror.org/02qdtrq21","country_code":"CN","type":"education","lineage":["https://openalex.org/I92178344"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bing Wang","raw_affiliation_strings":["School of Electrical &amp; Information Engineering, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China"],"affiliations":[{"raw_affiliation_string":"School of Electrical &amp; Information Engineering, Anhui University of Technology, Ma&#x0027;anshan, Anhui, China","institution_ids":["https://openalex.org/I92178344"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5107772243"],"corresponding_institution_ids":["https://openalex.org/I92178344"],"apc_list":null,"apc_paid":null,"fwci":0.6487,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.67503167,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"19","issue":"6","first_page":"3646","last_page":"3654"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.8867212533950806},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.7425823211669922},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6597524881362915},{"id":"https://openalex.org/keywords/sampling","display_name":"Sampling (signal processing)","score":0.6282762289047241},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.557537853717804},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.49723580479621887},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4459036886692047},{"id":"https://openalex.org/keywords/binary-number","display_name":"Binary number","score":0.4403310716152191},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.4395025372505188},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4176919758319855},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33827927708625793},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.23170417547225952},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1774056851863861},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.15659621357917786}],"concepts":[{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.8867212533950806},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.7425823211669922},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6597524881362915},{"id":"https://openalex.org/C140779682","wikidata":"https://www.wikidata.org/wiki/Q210868","display_name":"Sampling (signal processing)","level":3,"score":0.6282762289047241},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.557537853717804},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.49723580479621887},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4459036886692047},{"id":"https://openalex.org/C48372109","wikidata":"https://www.wikidata.org/wiki/Q3913","display_name":"Binary number","level":2,"score":0.4403310716152191},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.4395025372505188},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4176919758319855},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33827927708625793},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.23170417547225952},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1774056851863861},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.15659621357917786},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C94375191","wikidata":"https://www.wikidata.org/wiki/Q11205","display_name":"Arithmetic","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000093743","descriptor_name":"Random Forest","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000093743","descriptor_name":"Random Forest","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000093743","descriptor_name":"Random Forest","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2021.3123269","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3123269","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34705656","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34705656","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.7300000190734863,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G1365315517","display_name":null,"funder_award_id":"62172004","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3261462448","display_name":null,"funder_award_id":"61872004","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7571814587","display_name":null,"funder_award_id":"61672035","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G772230110","display_name":null,"funder_award_id":"KJ2019ZD05","funder_id":"https://openalex.org/F4320326664","funder_display_name":"Anhui Provincial Department of Education"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320326664","display_name":"Anhui Provincial Department of Education","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W79139011","https://openalex.org/W85350352","https://openalex.org/W1591261915","https://openalex.org/W1975304761","https://openalex.org/W1976937534","https://openalex.org/W2009672036","https://openalex.org/W2022477494","https://openalex.org/W2031918459","https://openalex.org/W2033855745","https://openalex.org/W2050000500","https://openalex.org/W2050526879","https://openalex.org/W2053848019","https://openalex.org/W2056797853","https://openalex.org/W2094148990","https://openalex.org/W2095148636","https://openalex.org/W2109553965","https://openalex.org/W2115410056","https://openalex.org/W2130479394","https://openalex.org/W2141627824","https://openalex.org/W2152521138","https://openalex.org/W2155194485","https://openalex.org/W2158714788","https://openalex.org/W2162682281","https://openalex.org/W2164843630","https://openalex.org/W2183771695","https://openalex.org/W2192578595","https://openalex.org/W2280888683","https://openalex.org/W2283929195","https://openalex.org/W2472454274","https://openalex.org/W2518156938","https://openalex.org/W2546726420","https://openalex.org/W2570083522","https://openalex.org/W2580698119","https://openalex.org/W2739876930","https://openalex.org/W2772865572","https://openalex.org/W2885015404","https://openalex.org/W2907063321","https://openalex.org/W2907926287","https://openalex.org/W2911964244","https://openalex.org/W2971405760","https://openalex.org/W2973041138","https://openalex.org/W2997235817","https://openalex.org/W2997732858","https://openalex.org/W3013976849","https://openalex.org/W3045012301","https://openalex.org/W3088070507","https://openalex.org/W3155649056","https://openalex.org/W4235456164","https://openalex.org/W4238372608","https://openalex.org/W6603460400"],"related_works":["https://openalex.org/W3193043704","https://openalex.org/W4386259002","https://openalex.org/W1546989560","https://openalex.org/W3171520305","https://openalex.org/W1924178503","https://openalex.org/W4308716060","https://openalex.org/W4280648719","https://openalex.org/W3135126032","https://openalex.org/W4386937079","https://openalex.org/W2901774584"],"abstract_inverted_index":{"The":[0],"computational":[1],"methods":[2],"of":[3,13,40,129,145],"protein-protein":[4],"interaction":[5,63],"sites":[6],"prediction":[7,38],"can":[8],"effectively":[9],"avoid":[10],"the":[11,23,33,37,66,74,89,109,120,127,143,146,152],"shortcomings":[12],"high":[14],"cost":[15],"and":[16,29,55,80,107,134,138],"time":[17],"in":[18,150],"traditional":[19],"experimental":[20],"approaches.":[21],"However,":[22],"serious":[24],"class":[25,90],"imbalance":[26,91],"between":[27],"interface":[28,153],"non-interface":[30,105,155],"residues":[31,67],"on":[32,68,97,119,136],"protein":[34,62,69],"sequences":[35,70],"limits":[36],"performance":[39],"these":[41],"methods.":[42],"This":[43],"work":[44],"therefore":[45],"proposed":[46,147],"a":[47],"new":[48],"strategy,":[49],"NearMiss-based":[50],"under-sampling":[51,94],"for":[52],"unbalancing":[53],"datasets":[54],"Random":[56],"Forest":[57],"classification":[58,118],"(NM-RF),":[59],"to":[60,87,102,115],"predict":[61],"sites.":[64],"Herein,":[65],"were":[71],"represented":[72],"by":[73],"PSSM-derived":[75],"features,":[76],"hydropathy":[77],"index":[78],"(HI)":[79],"relative":[81],"solvent":[82],"accessibility":[83],"(RSA).":[84],"In":[85],"order":[86],"resolve":[88],"problem,":[92],"an":[93],"method":[95,149],"based":[96],"NearMiss":[98],"algorithm":[99,112],"is":[100,113],"adopted":[101],"remove":[103],"some":[104],"residues,":[106],"then":[108],"random":[110],"forest":[111],"used":[114],"perform":[116],"binary":[117],"balanced":[121],"feature":[122],"datasets.":[123],"Experiments":[124],"show":[125],"that":[126],"accuracy":[128],"NM-RF":[130,148],"model":[131],"reaches":[132],"87.6%":[133],"84.3%":[135],"Dtestset72":[137],"PDBtestset164":[139],"respectively,":[140],"which":[141],"demonstrate":[142],"effectiveness":[144],"differentiating":[151],"or":[154],"residues.":[156]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-03-04T09:10:02.777135","created_date":"2025-10-10T00:00:00"}
