{"id":"https://openalex.org/W3201260316","doi":"https://doi.org/10.1109/tcbb.2021.3113122","title":"Extra Trees Method for Predicting LncRNA-Disease Association Based On Multi-Layer Graph Embedding Aggregation","display_name":"Extra Trees Method for Predicting LncRNA-Disease Association Based On Multi-Layer Graph Embedding Aggregation","publication_year":2021,"publication_date":"2021-09-16","ids":{"openalex":"https://openalex.org/W3201260316","doi":"https://doi.org/10.1109/tcbb.2021.3113122","mag":"3201260316","pmid":"https://pubmed.ncbi.nlm.nih.gov/34529571"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2021.3113122","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3113122","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101531254","display_name":"Qing-Wen Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qing-Wen Wu","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, Anhui, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, Anhui, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101959312","display_name":"Ruifen Cao","orcid":"https://orcid.org/0000-0002-4223-3422"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rui-Fen Cao","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, Anhui, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, Anhui, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065943710","display_name":"Junfeng Xia","orcid":"https://orcid.org/0000-0003-3024-1705"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun-Feng Xia","raw_affiliation_strings":["Institute of Physical Science and Information Technology, Anhui University, Hefei, Anhui, China"],"affiliations":[{"raw_affiliation_string":"Institute of Physical Science and Information Technology, Anhui University, Hefei, Anhui, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003156605","display_name":"Jiancheng Ni","orcid":"https://orcid.org/0000-0001-5667-9807"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian-Cheng Ni","raw_affiliation_strings":["School of Cyber Science and Engineering, Qufu Normal University, Qufu, Shandong, China"],"affiliations":[{"raw_affiliation_string":"School of Cyber Science and Engineering, Qufu Normal University, Qufu, Shandong, China","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064185915","display_name":"Chun-Hou Zheng","orcid":"https://orcid.org/0000-0002-2695-1926"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chun-Hou Zheng","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, Anhui, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, Anhui, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071754273","display_name":"Yansen Su","orcid":"https://orcid.org/0000-0002-3855-7133"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan-Sen Su","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, Anhui, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, Anhui, China","institution_ids":["https://openalex.org/I143868143"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5101531254"],"corresponding_institution_ids":["https://openalex.org/I143868143"],"apc_list":null,"apc_paid":null,"fwci":2.6066,"has_fulltext":false,"cited_by_count":36,"citation_normalized_percentile":{"value":0.91470537,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"19","issue":"6","first_page":"3171","last_page":"3178"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6486122012138367},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5658974051475525},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.5199521780014038},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4922157824039459},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4617905914783478},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4394038915634155},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.43857431411743164},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41123485565185547},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.39400216937065125},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3814983367919922},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.25794392824172974},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11464941501617432}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6486122012138367},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5658974051475525},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.5199521780014038},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4922157824039459},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4617905914783478},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4394038915634155},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.43857431411743164},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41123485565185547},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.39400216937065125},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3814983367919922},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.25794392824172974},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11464941501617432},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2021.3113122","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3113122","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34529571","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34529571","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5646767030","display_name":null,"funder_award_id":"U19A2064, 61873001, 61732012","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W611910056","https://openalex.org/W2063442983","https://openalex.org/W2113868616","https://openalex.org/W2128983843","https://openalex.org/W2141222510","https://openalex.org/W2152970345","https://openalex.org/W2418933454","https://openalex.org/W2462108616","https://openalex.org/W2772618228","https://openalex.org/W2789652838","https://openalex.org/W2793344725","https://openalex.org/W2885815722","https://openalex.org/W2889368816","https://openalex.org/W2894749196","https://openalex.org/W2895679848","https://openalex.org/W2896262061","https://openalex.org/W2903347960","https://openalex.org/W2909854604","https://openalex.org/W2942090527","https://openalex.org/W2949275670","https://openalex.org/W2955348639","https://openalex.org/W2969761002","https://openalex.org/W2971132843","https://openalex.org/W2990045899","https://openalex.org/W2991743543","https://openalex.org/W3006845127","https://openalex.org/W3008835119","https://openalex.org/W3013787003","https://openalex.org/W3014082018","https://openalex.org/W3014726572","https://openalex.org/W3020929333","https://openalex.org/W3027226623","https://openalex.org/W3034617560","https://openalex.org/W3048479618","https://openalex.org/W3048858802","https://openalex.org/W3054259679","https://openalex.org/W3081960698","https://openalex.org/W3082139797","https://openalex.org/W3089045446","https://openalex.org/W3090125845","https://openalex.org/W3090360024","https://openalex.org/W3092753375","https://openalex.org/W3092920605","https://openalex.org/W3093030756","https://openalex.org/W3093283000","https://openalex.org/W3093996932","https://openalex.org/W3094509572","https://openalex.org/W3095066331","https://openalex.org/W3095288373","https://openalex.org/W3096121935","https://openalex.org/W3096317047","https://openalex.org/W3096851590","https://openalex.org/W6718962110","https://openalex.org/W6763363257","https://openalex.org/W6778884117","https://openalex.org/W6784406891","https://openalex.org/W6784504483","https://openalex.org/W7073663565"],"related_works":["https://openalex.org/W2081900870","https://openalex.org/W2037549926","https://openalex.org/W2345479200","https://openalex.org/W2183306018","https://openalex.org/W2352440174","https://openalex.org/W2849310602","https://openalex.org/W3006008237","https://openalex.org/W4309440960","https://openalex.org/W2419146053","https://openalex.org/W4388890789"],"abstract_inverted_index":{"Lots":[0],"of":[1,90,102,110,132,147],"experimental":[2],"studies":[3,128],"have":[4,26,36],"revealed":[5],"the":[6,93,100,124,130,139,143],"significant":[7],"associations":[8,15],"between":[9,104],"lncRNAs":[10,61],"and":[11,62,69,106,145],"diseases.":[12,137],"Identifying":[13],"accurate":[14,45],"will":[16],"provide":[17],"a":[18,71],"new":[19],"perspective":[20],"for":[21,59],"disease":[22,105],"therapy.":[23],"Calculation-based":[24],"methods":[25,35],"been":[27],"developed":[28],"to":[29,49,85,98,123],"solve":[30],"these":[31,34],"problems,":[32],"but":[33],"some":[37],"limitations.":[38],"In":[39],"this":[40],"paper,":[41],"we":[42,55,77],"proposed":[43],"an":[44],"method,":[46],"named":[47],"MLGCNET,":[48],"discover":[50],"potential":[51,151],"lncRNA-disease":[52,72,152],"associations.":[53,153],"Firstly,":[54],"reconstructed":[56],"similarity":[57],"networks":[58],"both":[60],"diseases":[63],"using":[64],"top":[65],"k":[66],"similar":[67],"information,":[68],"constructed":[70],"heterogeneous":[73],"network":[74],"(LDN).":[75],"Then,":[76],"applied":[78],"Multi-Layer":[79],"Graph":[80],"Convolutional":[81],"Network":[82],"on":[83,135],"LDN":[84],"obtain":[86],"latent":[87],"feature":[88],"representations":[89],"nodes.":[91],"Finally,":[92],"Extra":[94],"Trees":[95],"was":[96],"used":[97],"calculate":[99],"probability":[101],"association":[103],"lncRNA.":[107],"The":[108],"results":[109,141],"extensive":[111],"5-fold":[112],"cross-validation":[113],"experiments":[114],"show":[115],"that":[116],"MLGCNET":[117,148],"has":[118],"superior":[119],"prediction":[120],"performance":[121,131],"compared":[122],"state-of-the-art":[125],"methods.":[126],"Case":[127],"confirm":[129],"our":[133],"model":[134],"specific":[136],"All":[138],"experiment":[140],"prove":[142],"effectiveness":[144],"practicality":[146],"in":[149],"predicting":[150]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":17}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
