{"id":"https://openalex.org/W3191434822","doi":"https://doi.org/10.1109/tcbb.2021.3104288","title":"Identifying LncRNA-Encoded Short Peptides Using Optimized Hybrid Features and Ensemble Learning","display_name":"Identifying LncRNA-Encoded Short Peptides Using Optimized Hybrid Features and Ensemble Learning","publication_year":2021,"publication_date":"2021-08-12","ids":{"openalex":"https://openalex.org/W3191434822","doi":"https://doi.org/10.1109/tcbb.2021.3104288","mag":"3191434822","pmid":"https://pubmed.ncbi.nlm.nih.gov/34383651"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2021.3104288","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3104288","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015704814","display_name":"Siyuan Zhao","orcid":"https://orcid.org/0000-0001-9756-4838"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Siyuan Zhao","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0001-9756-4838","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008478540","display_name":"Jun Meng","orcid":"https://orcid.org/0000-0002-7357-8562"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Meng","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0002-7357-8562","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051242607","display_name":"Qiang Kang","orcid":"https://orcid.org/0000-0001-6579-7944"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang Kang","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":null,"display_name":"Yushi Luan","orcid":"https://orcid.org/0000-0001-8955-041X"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210092944","display_name":"Dalian University","ror":"https://ror.org/00g2ypp58","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210092944"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yushi Luan","raw_affiliation_strings":["School of Bioengineering, Dalian University of Technology, Dalian, Liaoning, China"],"raw_orcid":"https://orcid.org/0000-0001-8955-041X","affiliations":[{"raw_affiliation_string":"School of Bioengineering, Dalian University of Technology, Dalian, Liaoning, China","institution_ids":["https://openalex.org/I4210092944","https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5015704814"],"corresponding_institution_ids":["https://openalex.org/I27357992"],"apc_list":null,"apc_paid":null,"fwci":0.5247,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.57169762,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"19","issue":"5","first_page":"2873","last_page":"2881"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.7179505825042725},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6840890645980835},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.6685261726379395},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6267186999320984},{"id":"https://openalex.org/keywords/ensemble-learning","display_name":"Ensemble learning","score":0.6067472100257874},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.48756593465805054},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4822288453578949},{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.4781680703163147},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4776683747768402},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.43374815583229065},{"id":"https://openalex.org/keywords/modal","display_name":"Modal","score":0.4233991205692291}],"concepts":[{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.7179505825042725},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6840890645980835},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.6685261726379395},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6267186999320984},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.6067472100257874},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.48756593465805054},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4822288453578949},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.4781680703163147},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4776683747768402},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.43374815583229065},{"id":"https://openalex.org/C71139939","wikidata":"https://www.wikidata.org/wiki/Q910194","display_name":"Modal","level":2,"score":0.4233991205692291},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C188027245","wikidata":"https://www.wikidata.org/wiki/Q750446","display_name":"Polymer chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062085","descriptor_name":"RNA, Long Noncoding","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2021.3104288","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3104288","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34383651","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34383651","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.47999998927116394,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[{"id":"https://openalex.org/G3962349799","display_name":null,"funder_award_id":"61872055","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5552543182","display_name":null,"funder_award_id":"32072592","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8649917763","display_name":null,"funder_award_id":"31872116","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W1253096047","https://openalex.org/W1510688672","https://openalex.org/W1832693441","https://openalex.org/W1968185051","https://openalex.org/W1980069210","https://openalex.org/W2014519230","https://openalex.org/W2045029772","https://openalex.org/W2045747807","https://openalex.org/W2052591459","https://openalex.org/W2060300932","https://openalex.org/W2074466274","https://openalex.org/W2080052447","https://openalex.org/W2085651871","https://openalex.org/W2085660114","https://openalex.org/W2108551012","https://openalex.org/W2132292391","https://openalex.org/W2139658526","https://openalex.org/W2142580593","https://openalex.org/W2145191876","https://openalex.org/W2149350210","https://openalex.org/W2152529906","https://openalex.org/W2152800101","https://openalex.org/W2162417400","https://openalex.org/W2168295659","https://openalex.org/W2168936979","https://openalex.org/W2170747616","https://openalex.org/W2516328000","https://openalex.org/W2561535772","https://openalex.org/W2571814563","https://openalex.org/W2582554428","https://openalex.org/W2593488635","https://openalex.org/W2615786037","https://openalex.org/W2751598946","https://openalex.org/W2773078063","https://openalex.org/W2790274448","https://openalex.org/W2792145175","https://openalex.org/W2796527248","https://openalex.org/W2906204361","https://openalex.org/W2913230339","https://openalex.org/W2914698725","https://openalex.org/W2919115771","https://openalex.org/W2950718555","https://openalex.org/W2951344785","https://openalex.org/W2966111606","https://openalex.org/W2966725169","https://openalex.org/W2987349979","https://openalex.org/W2997168324","https://openalex.org/W3005454931","https://openalex.org/W3008578565","https://openalex.org/W3013495013","https://openalex.org/W3028128708","https://openalex.org/W3037117187","https://openalex.org/W3037563142","https://openalex.org/W3088671900","https://openalex.org/W3091979363","https://openalex.org/W3102895271","https://openalex.org/W4246193833","https://openalex.org/W4250359879","https://openalex.org/W4289883804"],"related_works":["https://openalex.org/W3165907317","https://openalex.org/W4380790487","https://openalex.org/W4293525103","https://openalex.org/W4281560664","https://openalex.org/W4375930479","https://openalex.org/W4318350883","https://openalex.org/W2385233088","https://openalex.org/W4233213551","https://openalex.org/W4386214552","https://openalex.org/W4224277717"],"abstract_inverted_index":{"Long":[0],"non-coding":[1],"RNA":[2],"(lncRNA)":[3],"contains":[4],"short":[5,12],"open":[6],"reading":[7],"frames":[8],"(sORFs),":[9],"and":[10,91,131,151],"sORFs-encoded":[11],"peptides":[13],"(SEPs)":[14],"have":[15,178],"become":[16],"the":[17,108,113,133,164,172],"focus":[18],"of":[19,32,64,80,110,166,184],"scientific":[20],"studies":[21,183],"due":[22],"to":[23,36,48,77,99,106],"their":[24,39,152],"crucial":[25],"role":[26],"in":[27,117],"life":[28],"activities.":[29],"The":[30,159],"identification":[31],"SEPs":[33,47,55,68,79],"is":[34,61,84,123,168],"vital":[35],"further":[37,182],"understanding":[38],"regulatory":[40],"function.":[41],"Bioinformatics":[42],"methods":[43,65],"can":[44],"quickly":[45],"identify":[46,78],"provide":[49],"credible":[50],"candidate":[51],"sequences":[52],"for":[53,66,137,156,181],"verifying":[54],"by":[56],"biological":[57],"experimenrts.":[58],"However,":[59],"there":[60],"a":[62,73],"lack":[63],"identifying":[67],"directly.":[69],"In":[70,104],"this":[71],"study,":[72],"machine":[74],"learning":[75],"method":[76,122],"plant":[81],"lncRNA":[82],"(ISPL)":[83],"proposed.":[85],"Hybrid":[86],"features":[87,90,93,140,148],"including":[88],"sequence":[89],"physicochemical":[92],"are":[94,149,154],"extracted":[95],"manually":[96],"or":[97],"adaptively":[98],"construct":[100],"different":[101,138,146],"modal":[102,139,147],"features.":[103],"order":[105],"keep":[107],"stability":[109],"feature":[111,120,128],"selection,":[112],"non-linear":[114],"correction":[115],"applied":[116],"Max-Relevance-Max-Distance":[118],"(nocRD)":[119],"selection":[121],"proposed,":[124],"which":[125,176],"integrates":[126],"multiple":[127],"ranking":[129],"results":[130,161],"uses":[132],"iterative":[134],"random":[135],"forest":[136],"dimensionality":[141],"reduction.":[142],"Classification":[143],"models":[144],"with":[145],"constructed,":[150],"outputs":[153],"combined":[155],"ensemble":[157],"classification.":[158],"experimental":[160],"show":[162],"that":[163],"accuracy":[165],"ISPL":[167],"89.86%":[169],"percent":[170],"on":[171],"independent":[173],"test":[174],"set,":[175],"will":[177],"important":[179],"implications":[180],"functional":[185],"genomic.":[186]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
