{"id":"https://openalex.org/W3182822370","doi":"https://doi.org/10.1109/tcbb.2021.3097037","title":"Predicting miRNA-Disease Associations via Combining Probability Matrix Feature Decomposition With Neighbor Learning","display_name":"Predicting miRNA-Disease Associations via Combining Probability Matrix Feature Decomposition With Neighbor Learning","publication_year":2021,"publication_date":"2021-08-24","ids":{"openalex":"https://openalex.org/W3182822370","doi":"https://doi.org/10.1109/tcbb.2021.3097037","mag":"3182822370","pmid":"https://pubmed.ncbi.nlm.nih.gov/34260356"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2021.3097037","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3097037","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001964748","display_name":"Xinguo Lu","orcid":"https://orcid.org/0000-0001-8607-8121"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xinguo Lu","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China"],"raw_orcid":"https://orcid.org/0000-0001-8607-8121","affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100711221","display_name":"Jinxin Li","orcid":"https://orcid.org/0000-0001-7031-9832"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinxin Li","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067669655","display_name":"Zhenghao Zhu","orcid":"https://orcid.org/0000-0001-8443-6095"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenghao Zhu","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101917095","display_name":"Yue Yuan","orcid":"https://orcid.org/0000-0002-5142-970X"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue Yuan","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103188965","display_name":"Guan-Yuan Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guanyuan Chen","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101747968","display_name":"Keren He","orcid":"https://orcid.org/0000-0003-4196-4992"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Keren He","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I16609230"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5001964748"],"corresponding_institution_ids":["https://openalex.org/I16609230"],"apc_list":null,"apc_paid":null,"fwci":0.787,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.6561006,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"19","issue":"6","first_page":"3160","last_page":"3170"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5845662355422974},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5798043012619019},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.513624370098114},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.47601157426834106},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.46135377883911133},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.44717925786972046},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.44372496008872986},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3603169322013855},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11567404866218567}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5845662355422974},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5798043012619019},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.513624370098114},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.47601157426834106},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.46135377883911133},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.44717925786972046},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.44372496008872986},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3603169322013855},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11567404866218567},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2021.3097037","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3097037","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34260356","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34260356","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4196429476","display_name":null,"funder_award_id":"61972141","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6593862345","display_name":null,"funder_award_id":"2018YFC0910405","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W1920303762","https://openalex.org/W2006247279","https://openalex.org/W2014946489","https://openalex.org/W2022732522","https://openalex.org/W2094397139","https://openalex.org/W2105437322","https://openalex.org/W2129158737","https://openalex.org/W2138664009","https://openalex.org/W2141222510","https://openalex.org/W2145361279","https://openalex.org/W2145955247","https://openalex.org/W2158135353","https://openalex.org/W2258129851","https://openalex.org/W2294639133","https://openalex.org/W2404208291","https://openalex.org/W2410390867","https://openalex.org/W2416873003","https://openalex.org/W2460762678","https://openalex.org/W2473988089","https://openalex.org/W2580423083","https://openalex.org/W2592189645","https://openalex.org/W2604947511","https://openalex.org/W2750900465","https://openalex.org/W2751604936","https://openalex.org/W2752943586","https://openalex.org/W2757038198","https://openalex.org/W2773775195","https://openalex.org/W2793344725","https://openalex.org/W2809363952","https://openalex.org/W2883054023","https://openalex.org/W2895035285","https://openalex.org/W2896262061","https://openalex.org/W2922071456","https://openalex.org/W2936144882","https://openalex.org/W2945673033","https://openalex.org/W2972771793","https://openalex.org/W3004015834","https://openalex.org/W3028368739","https://openalex.org/W3082122339","https://openalex.org/W3099000562","https://openalex.org/W3170256258","https://openalex.org/W6655994215","https://openalex.org/W6782782582"],"related_works":["https://openalex.org/W2352440174","https://openalex.org/W4309440960","https://openalex.org/W2062168445","https://openalex.org/W2348940229","https://openalex.org/W2363046693","https://openalex.org/W2389491697","https://openalex.org/W2375480909","https://openalex.org/W2353314428","https://openalex.org/W4301044699","https://openalex.org/W2067476155"],"abstract_inverted_index":{"Predicting":[0],"the":[1,9,20,72,84,89,95,128,134,139,142],"associations":[2],"of":[3,11,75,141],"miRNAs":[4,99],"and":[5,22,53,60,100,120,138],"diseases":[6,52,101],"may":[7],"uncover":[8],"causation":[10],"various":[12],"diseases.":[13],"Many":[14],"methods":[15,117],"are":[16,136],"emerging":[17],"to":[18,39,82,87,114,146],"tackle":[19,88],"sparse":[21,119],"unbalanced":[23,121],"disease":[24,79],"related":[25],"miRNA":[26,77],"prediction.":[27],"Here,":[28],"we":[29,47,64,93],"propose":[30],"a":[31,66],"Probabilistic":[32],"matrix":[33,104],"decomposition":[34],"combined":[35],"with":[36],"neighbor":[37,67,73],"learning":[38,68],"identify":[40],"MiRNA-Disease":[41],"Associations":[42],"utilizing":[43],"heterogeneous":[44],"data(PMDA).":[45],"First,":[46],"build":[48],"similarity":[49],"networks":[50],"for":[51],"miRNAs,":[54],"respectively,":[55],"by":[56,133],"integrating":[57],"semantic":[58],"information":[59,74],"functional":[61],"interactions.":[62],"Second,":[63],"construct":[65],"model":[69],"in":[70,118],"which":[71],"individual":[76],"or":[78],"is":[80,112,144],"utilized":[81],"enhance":[83],"association":[85,97],"relationship":[86],"spare":[90],"problem.":[91],"Third,":[92],"predict":[94],"potential":[96],"between":[98],"via":[102],"probability":[103],"decomposition.":[105],"The":[106,123],"experimental":[107],"results":[108],"show":[109],"that":[110,127],"PMDA":[111,135,143],"superior":[113,145],"other":[115,147],"five":[116],"data.":[122],"case":[124],"study":[125],"shows":[126],"new":[129],"miRNA-disease":[130],"interactions":[131],"predicted":[132],"effective":[137],"performance":[140],"methods.":[148]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
