{"id":"https://openalex.org/W3088102389","doi":"https://doi.org/10.1109/tcbb.2021.3094217","title":"GEFA: Early Fusion Approach in Drug-Target Affinity Prediction","display_name":"GEFA: Early Fusion Approach in Drug-Target Affinity Prediction","publication_year":2021,"publication_date":"2021-07-01","ids":{"openalex":"https://openalex.org/W3088102389","doi":"https://doi.org/10.1109/tcbb.2021.3094217","mag":"3088102389","pmid":"https://pubmed.ncbi.nlm.nih.gov/34197324"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2021.3094217","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3094217","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2009.12146","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100764745","display_name":"Tri Minh Nguyen","orcid":"https://orcid.org/0000-0002-9045-8589"},"institutions":[{"id":"https://openalex.org/I149704539","display_name":"Deakin University","ror":"https://ror.org/02czsnj07","country_code":"AU","type":"education","lineage":["https://openalex.org/I149704539"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Tri Minh Nguyen","raw_affiliation_strings":["Applied Artificial Intelligence Institute, Deakin University, Geelong, VIC, Australia","[Deakin University - Geelong Campus at Waurn Ponds, 98475 Geelong, Victoria, Australia, 3217 (e-mail: minhtri@deakin.edu.au)]"],"raw_orcid":"https://orcid.org/0000-0002-9045-8589","affiliations":[{"raw_affiliation_string":"Applied Artificial Intelligence Institute, Deakin University, Geelong, VIC, Australia","institution_ids":["https://openalex.org/I149704539"]},{"raw_affiliation_string":"[Deakin University - Geelong Campus at Waurn Ponds, 98475 Geelong, Victoria, Australia, 3217 (e-mail: minhtri@deakin.edu.au)]","institution_ids":["https://openalex.org/I149704539"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100705489","display_name":"Thin Nguyen","orcid":"https://orcid.org/0000-0003-3467-8963"},"institutions":[{"id":"https://openalex.org/I149704539","display_name":"Deakin University","ror":"https://ror.org/02czsnj07","country_code":"AU","type":"education","lineage":["https://openalex.org/I149704539"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Thin Nguyen","raw_affiliation_strings":["Applied Artificial Intelligence Institute, Deakin University, Geelong, VIC, Australia","School of Information Technology, Deakin University, Geelong, Victoria, Australia, (e-mail: thin.nguyen@deakin.edu.au)"],"raw_orcid":"https://orcid.org/0000-0003-3467-8963","affiliations":[{"raw_affiliation_string":"Applied Artificial Intelligence Institute, Deakin University, Geelong, VIC, Australia","institution_ids":["https://openalex.org/I149704539"]},{"raw_affiliation_string":"School of Information Technology, Deakin University, Geelong, Victoria, Australia, (e-mail: thin.nguyen@deakin.edu.au)","institution_ids":["https://openalex.org/I149704539"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079045166","display_name":"Thao Minh Le","orcid":"https://orcid.org/0000-0002-8089-9962"},"institutions":[{"id":"https://openalex.org/I149704539","display_name":"Deakin University","ror":"https://ror.org/02czsnj07","country_code":"AU","type":"education","lineage":["https://openalex.org/I149704539"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Thao Minh Le","raw_affiliation_strings":["Applied Artificial Intelligence Institute, Deakin University, Geelong, VIC, Australia","Deakin University School of Computing and Mathematics, 206228 Geelong, Victoria, Australia, 3216 (e-mail: lethao@deakin.edu.au)"],"raw_orcid":"https://orcid.org/0000-0002-8089-9962","affiliations":[{"raw_affiliation_string":"Applied Artificial Intelligence Institute, Deakin University, Geelong, VIC, Australia","institution_ids":["https://openalex.org/I149704539"]},{"raw_affiliation_string":"Deakin University School of Computing and Mathematics, 206228 Geelong, Victoria, Australia, 3216 (e-mail: lethao@deakin.edu.au)","institution_ids":["https://openalex.org/I149704539"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085471517","display_name":"Truyen Tran","orcid":"https://orcid.org/0000-0001-6531-8907"},"institutions":[{"id":"https://openalex.org/I149704539","display_name":"Deakin University","ror":"https://ror.org/02czsnj07","country_code":"AU","type":"education","lineage":["https://openalex.org/I149704539"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Truyen Tran","raw_affiliation_strings":["Applied Artificial Intelligence Institute, Deakin University, Geelong, VIC, Australia","Applied AI Institute, Deakin University - Geelong Waterfront Campus, 91844 Geelong, Victoria, Australia, 3220 (e-mail: truyen.tran@deakin.edu.au)"],"raw_orcid":"https://orcid.org/0000-0001-6531-8907","affiliations":[{"raw_affiliation_string":"Applied Artificial Intelligence Institute, Deakin University, Geelong, VIC, Australia","institution_ids":["https://openalex.org/I149704539"]},{"raw_affiliation_string":"Applied AI Institute, Deakin University - Geelong Waterfront Campus, 91844 Geelong, Victoria, Australia, 3220 (e-mail: truyen.tran@deakin.edu.au)","institution_ids":["https://openalex.org/I149704539"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100764745"],"corresponding_institution_ids":["https://openalex.org/I149704539"],"apc_list":null,"apc_paid":null,"fwci":0.757,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.7413493,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"19","issue":"2","first_page":"718","last_page":"728"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.6598235368728638},{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.6519302725791931},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6511276364326477},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5454259514808655},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5278106927871704},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4779362976551056},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4550895690917969},{"id":"https://openalex.org/keywords/drug-target","display_name":"Drug target","score":0.4432111382484436},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.44151192903518677},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.43623054027557373},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.25812673568725586},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.20826241374015808},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.11565682291984558},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11151966452598572},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.07807198166847229}],"concepts":[{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.6598235368728638},{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.6519302725791931},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6511276364326477},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5454259514808655},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5278106927871704},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4779362976551056},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4550895690917969},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.4432111382484436},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.44151192903518677},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.43623054027557373},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.25812673568725586},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.20826241374015808},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.11565682291984558},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11151966452598572},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.07807198166847229},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000076722","descriptor_name":"Drug Development","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000076722","descriptor_name":"Drug Development","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000076722","descriptor_name":"Drug Development","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1109/tcbb.2021.3094217","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3094217","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34197324","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34197324","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmh:oai:arXiv.org:2009.12146","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2009.12146","pdf_url":"https://arxiv.org/pdf/2009.12146","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"mag:3088102389","is_oa":true,"landing_page_url":"http://export.arxiv.org/pdf/2009.12146","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"pmh:oai:dro.deakin.edu.au:DU:30158851","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401102","display_name":"Own your potential (DEAKIN)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149704539","host_organization_name":"Deakin University","host_organization_lineage":["https://openalex.org/I149704539"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:figshare.com:article/20635320","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/GEFA_early_fusion_approach_in_drug-target_affinity_prediction/20635320","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"doi:10.48550/arxiv.2009.12146","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2009.12146","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2009.12146","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2009.12146","pdf_url":"https://arxiv.org/pdf/2009.12146","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3088102389.pdf","grobid_xml":"https://content.openalex.org/works/W3088102389.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W317957491","https://openalex.org/W1135792216","https://openalex.org/W1737223868","https://openalex.org/W1930228151","https://openalex.org/W1970148391","https://openalex.org/W1972987731","https://openalex.org/W1974645077","https://openalex.org/W1976499671","https://openalex.org/W1982945330","https://openalex.org/W1986240377","https://openalex.org/W1991750682","https://openalex.org/W1992407562","https://openalex.org/W1993046136","https://openalex.org/W1996546582","https://openalex.org/W2004910511","https://openalex.org/W2019707847","https://openalex.org/W2036906022","https://openalex.org/W2041729187","https://openalex.org/W2054725011","https://openalex.org/W2076604395","https://openalex.org/W2086286404","https://openalex.org/W2092285329","https://openalex.org/W2116494521","https://openalex.org/W2137632714","https://openalex.org/W2138872556","https://openalex.org/W2155157373","https://openalex.org/W2171234651","https://openalex.org/W2177411254","https://openalex.org/W2194775991","https://openalex.org/W2204695023","https://openalex.org/W2259538443","https://openalex.org/W2519887557","https://openalex.org/W2604306554","https://openalex.org/W2605952223","https://openalex.org/W2744129621","https://openalex.org/W2781821160","https://openalex.org/W2785947426","https://openalex.org/W2792643794","https://openalex.org/W2794875394","https://openalex.org/W2801253218","https://openalex.org/W2808199968","https://openalex.org/W2820941669","https://openalex.org/W2883204049","https://openalex.org/W2887766329","https://openalex.org/W2896002881","https://openalex.org/W2896829849","https://openalex.org/W2899070097","https://openalex.org/W2911871527","https://openalex.org/W2918342466","https://openalex.org/W2949867299","https://openalex.org/W2950334474","https://openalex.org/W2951599627","https://openalex.org/W2963341956","https://openalex.org/W2971227267","https://openalex.org/W2978484973","https://openalex.org/W2989848927","https://openalex.org/W2990717563","https://openalex.org/W2991281491","https://openalex.org/W2999044305","https://openalex.org/W3005769002","https://openalex.org/W3015490653","https://openalex.org/W3023371261","https://openalex.org/W3032123378","https://openalex.org/W3034513622","https://openalex.org/W3096561213","https://openalex.org/W3136918052","https://openalex.org/W4241295291","https://openalex.org/W6726873649","https://openalex.org/W6735840763","https://openalex.org/W6749029207","https://openalex.org/W6760045743","https://openalex.org/W6763868836"],"related_works":["https://openalex.org/W3175786839","https://openalex.org/W3130104819","https://openalex.org/W3015490653","https://openalex.org/W3004604833","https://openalex.org/W3127104022","https://openalex.org/W3127864344","https://openalex.org/W3191666000","https://openalex.org/W3193060950","https://openalex.org/W3126435399","https://openalex.org/W3194517519","https://openalex.org/W2281062452","https://openalex.org/W3189064767","https://openalex.org/W3140330522","https://openalex.org/W2805086457","https://openalex.org/W3191452947","https://openalex.org/W3152586663","https://openalex.org/W3020483007","https://openalex.org/W3119872582","https://openalex.org/W2847476721","https://openalex.org/W2993458188"],"abstract_inverted_index":{"Predicting":[0],"the":[1,32,54,80,86,106,113,158,185,188,193,199],"interaction":[2],"between":[3,35],"a":[4,7,69,96,117,122,130,133],"compound":[5],"and":[6,37,192],"target":[8,47,109],"is":[9,119,142],"crucial":[10],"for":[11,202],"rapid":[12],"drug":[13,36,55,118],"repurposing.":[14],"Deep":[15],"learning":[16,45,162],"has":[17],"been":[18],"successfully":[19],"applied":[20],"in":[21,75,108,132,197],"drug-target":[22,203],"affinity":[23],"(DTA)problem.":[24],"However,":[25],"previous":[26,60],"deep":[27,145],"learning-based":[28],"methods":[29,62],"ignore":[30],"modeling":[31,198],"direct":[33],"interactions":[34],"protein":[38,64,73,154,164,190],"residues.":[39],"This":[40],"would":[41],"lead":[42],"to":[43,53,104,173],"inaccurate":[44],"of":[46,72,82,85,112,124,136,161,187],"representation":[48,65,110,155],"which":[49,126],"may":[50],"change":[51],"due":[52],"binding":[56,114],"effects.":[57,115],"In":[58],"addition,":[59],"DTA":[61,76,87],"learn":[63],"solely":[66],"based":[67],"on":[68],"small":[70],"number":[71],"sequences":[74],"datasets":[77],"while":[78],"neglecting":[79],"use":[81,152],"proteins":[83],"outside":[84],"datasets.":[88],"We":[89,150],"propose":[90],"GEFA":[91,196],"(Graph":[92],"Early":[93],"Fusion":[94],"Affinity),":[95],"novel":[97,178],"graph-in-graph":[98],"neural":[99,148],"network":[100],"with":[101],"attention":[102],"mechanism":[103],"address":[105],"changes":[107],"because":[111],"Specifically,":[116],"modeled":[120],"as":[121,129,177],"graph":[123,135,147,201],"atoms,":[125],"then":[127],"serves":[128],"node":[131],"larger":[134],"residues-drug":[137],"complex.":[138],"The":[139,166,182],"resulting":[140],"model":[141],"an":[143],"expressive":[144],"nested":[146,200],"network.":[149],"also":[151],"pre-trained":[153,189],"powered":[156],"by":[157],"recent":[159],"effort":[160],"contextualized":[163],"representation.":[165],"experiments":[167],"are":[168],"conducted":[169],"under":[170],"different":[171],"settings":[172],"evaluate":[174],"scenarios":[175],"such":[176],"drugs":[179],"or":[180],"targets.":[181],"results":[183],"demonstrate":[184],"effectiveness":[186],"embedding":[191],"advantages":[194],"our":[195],"interaction.":[204]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
