{"id":"https://openalex.org/W3165178981","doi":"https://doi.org/10.1109/tcbb.2021.3086090","title":"Document-Level Chemical-Induced Disease Relation Extraction via Hierarchical Representation Learning","display_name":"Document-Level Chemical-Induced Disease Relation Extraction via Hierarchical Representation Learning","publication_year":2021,"publication_date":"2021-06-02","ids":{"openalex":"https://openalex.org/W3165178981","doi":"https://doi.org/10.1109/tcbb.2021.3086090","mag":"3165178981","pmid":"https://pubmed.ncbi.nlm.nih.gov/34077368"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2021.3086090","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3086090","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079405950","display_name":"Weizhong Zhao","orcid":"https://orcid.org/0000-0001-8552-6084"},"institutions":[{"id":"https://openalex.org/I29739308","display_name":"Guangxi Normal University","ror":"https://ror.org/02frt9q65","country_code":"CN","type":"education","lineage":["https://openalex.org/I29739308"]},{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]},{"id":"https://openalex.org/I5343935","display_name":"Guilin University of Electronic Technology","ror":"https://ror.org/05arjae42","country_code":"CN","type":"education","lineage":["https://openalex.org/I5343935"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weizhong Zhao","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring &amp; Research Center for Network Media, Central China Normal University, Wuhan, Hubei, China","Guangxi Key Lab of Multi-Source Information Mining & Security, Guangxi Normal University, Guilin, China","Guangxi Key Laboratory of Trusted Software, Guilin University of Electronic Technology, Guilin, China"],"affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring &amp; Research Center for Network Media, Central China Normal University, Wuhan, Hubei, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"Guangxi Key Lab of Multi-Source Information Mining & Security, Guangxi Normal University, Guilin, China","institution_ids":["https://openalex.org/I29739308"]},{"raw_affiliation_string":"Guangxi Key Laboratory of Trusted Software, Guilin University of Electronic Technology, Guilin, China","institution_ids":["https://openalex.org/I5343935"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100761613","display_name":"Jinyong Zhang","orcid":"https://orcid.org/0000-0001-9622-5834"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinyong Zhang","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring &amp; Research Center for Network Media, Central China Normal University, Wuhan, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring &amp; Research Center for Network Media, Central China Normal University, Wuhan, Hubei, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002718976","display_name":"Jincai Yang","orcid":"https://orcid.org/0000-0002-4446-5809"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jincai Yang","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring &amp; Research Center for Network Media, Central China Normal University, Wuhan, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring &amp; Research Center for Network Media, Central China Normal University, Wuhan, Hubei, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003550654","display_name":"Xingpeng Jiang","orcid":"https://orcid.org/0000-0002-8848-9300"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingpeng Jiang","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring &amp; Research Center for Network Media, Central China Normal University, Wuhan, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring &amp; Research Center for Network Media, Central China Normal University, Wuhan, Hubei, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102010131","display_name":"Tingting He","orcid":"https://orcid.org/0000-0001-7523-6550"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingting He","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring &amp; Research Center for Network Media, Central China Normal University, Wuhan, Hubei, China"],"affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, School of Computer, and National Language Resources Monitoring &amp; Research Center for Network Media, Central China Normal University, Wuhan, Hubei, China","institution_ids":["https://openalex.org/I40963666"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5079405950"],"corresponding_institution_ids":["https://openalex.org/I29739308","https://openalex.org/I40963666","https://openalex.org/I5343935"],"apc_list":null,"apc_paid":null,"fwci":0.2413,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.5182023,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"19","issue":"5","first_page":"2782","last_page":"2793"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9872000217437744,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9708999991416931,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.8191391229629517},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.7437780499458313},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6978327631950378},{"id":"https://openalex.org/keywords/hypergraph","display_name":"Hypergraph","score":0.6876043677330017},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5797412991523743},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5677788853645325},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4455757141113281},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36867469549179077},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33795297145843506},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3366353213787079},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32447493076324463},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3040945529937744},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10372886061668396}],"concepts":[{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.8191391229629517},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.7437780499458313},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6978327631950378},{"id":"https://openalex.org/C2781221856","wikidata":"https://www.wikidata.org/wiki/Q840247","display_name":"Hypergraph","level":2,"score":0.6876043677330017},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5797412991523743},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5677788853645325},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4455757141113281},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36867469549179077},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33795297145843506},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3366353213787079},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32447493076324463},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3040945529937744},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10372886061668396},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2021.3086090","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3086090","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34077368","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34077368","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G1307575636","display_name":null,"funder_award_id":"61932008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1820593694","display_name":null,"funder_award_id":"61872157","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G345651878","display_name":null,"funder_award_id":"CCNU19TD004","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G6496608217","display_name":null,"funder_award_id":"2019010701011392","funder_id":"https://openalex.org/F4320336636","funder_display_name":"Wuhan Science and Technology Project"},{"id":"https://openalex.org/G8543904368","display_name":null,"funder_award_id":"61532008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320336636","display_name":"Wuhan Science and Technology Project","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W2102575587","https://openalex.org/W2136640051","https://openalex.org/W2142016317","https://openalex.org/W2169491861","https://openalex.org/W2170057991","https://openalex.org/W2250539671","https://openalex.org/W2328458480","https://openalex.org/W2331398706","https://openalex.org/W2339107443","https://openalex.org/W2341742436","https://openalex.org/W2346452181","https://openalex.org/W2485374661","https://openalex.org/W2527712604","https://openalex.org/W2574454672","https://openalex.org/W2600702321","https://openalex.org/W2604372572","https://openalex.org/W2771058867","https://openalex.org/W2773491747","https://openalex.org/W2801290881","https://openalex.org/W2892094955","https://openalex.org/W2911489562","https://openalex.org/W2914171828","https://openalex.org/W2944400536","https://openalex.org/W2963014179","https://openalex.org/W2963021258","https://openalex.org/W2964015378","https://openalex.org/W2964341631","https://openalex.org/W2971221499","https://openalex.org/W3014987848","https://openalex.org/W3093811011","https://openalex.org/W4385245566","https://openalex.org/W6685083254","https://openalex.org/W6726873649","https://openalex.org/W6732104566","https://openalex.org/W6739901393","https://openalex.org/W6762235773"],"related_works":["https://openalex.org/W3207070074","https://openalex.org/W2728391469","https://openalex.org/W1991536873","https://openalex.org/W2952854166","https://openalex.org/W4308734192","https://openalex.org/W2971267355","https://openalex.org/W2945365184","https://openalex.org/W2947903144","https://openalex.org/W4383860413","https://openalex.org/W132356436"],"abstract_inverted_index":{"Over":[0],"the":[1,33,44,79,101,110,118,130,133],"past":[2],"decades,":[3],"Chemical-induced":[4],"Disease":[5],"(CID)":[6],"relations":[7],"have":[8],"attracted":[9],"extensive":[10],"attention":[11],"in":[12,18,40],"biomedical":[13,19,41],"community,":[14],"reflecting":[15],"wide":[16],"applications":[17],"research":[20],"and":[21,37,43,84,115],"healthcare":[22],"field.":[23],"However,":[24],"prior":[25],"efforts":[26],"fail":[27],"to":[28,48,77,108],"make":[29],"full":[30],"use":[31],"of":[32,120,132],"interaction":[34,81],"between":[35,82],"local":[36,83],"global":[38,85],"contexts":[39],"document,":[42],"derived":[45],"performance":[46,119],"needs":[47],"be":[49],"improved":[50],"accordingly.":[51],"In":[52,99],"this":[53],"paper,":[54],"we":[55],"propose":[56],"a":[57,67,126],"novel":[58],"framework":[59],"for":[60,95],"document-level":[61],"CID":[62,96,102,121],"relation":[63,97,122],"extraction.":[64,98],"More":[65],"specifically,":[66],"stacked":[68],"Hypergraph":[69],"Aggregation":[70],"Neural":[71],"Network":[72],"(HANN)":[73],"layers":[74],"are":[75,93],"introduced":[76],"model":[78],"complicated":[80],"contexts,":[86],"based":[87],"on":[88,125],"which":[89],"better":[90],"contextualized":[91],"representations":[92],"obtained":[94],"addition,":[100],"Relation":[103],"Heterogeneous":[104],"Graph":[105],"is":[106],"constructed":[107],"capture":[109],"information":[111],"with":[112],"different":[113],"granularities":[114],"improve":[116],"further":[117],"classification.":[123],"Experiments":[124],"real-world":[127],"dataset":[128],"demonstrate":[129],"effectiveness":[131],"proposed":[134],"framework.":[135]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
