{"id":"https://openalex.org/W3160009429","doi":"https://doi.org/10.1109/tcbb.2021.3082466","title":"MGATRx: Discovering Drug Repositioning Candidates Using Multi-View Graph Attention","display_name":"MGATRx: Discovering Drug Repositioning Candidates Using Multi-View Graph Attention","publication_year":2021,"publication_date":"2021-05-20","ids":{"openalex":"https://openalex.org/W3160009429","doi":"https://doi.org/10.1109/tcbb.2021.3082466","mag":"3160009429","pmid":"https://pubmed.ncbi.nlm.nih.gov/34014830"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2021.3082466","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3082466","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10038065/pdf/nihms-1841690.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023311059","display_name":"Jaswanth Yella","orcid":"https://orcid.org/0000-0002-0750-6157"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]},{"id":"https://openalex.org/I63135867","display_name":"University of Cincinnati","ror":"https://ror.org/01e3m7079","country_code":"US","type":"education","lineage":["https://openalex.org/I63135867"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jaswanth K. Yella","raw_affiliation_strings":["Department of Computer Science, University of Cincinnati, Cincinnati, OH, USA","Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA"],"raw_orcid":"https://orcid.org/0000-0002-0750-6157","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Cincinnati, Cincinnati, OH, USA","institution_ids":["https://openalex.org/I63135867"]},{"raw_affiliation_string":"Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA","institution_ids":["https://openalex.org/I1285204247"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061689835","display_name":"Anil G. Jegga","orcid":"https://orcid.org/0000-0002-4881-7752"},"institutions":[{"id":"https://openalex.org/I1285204247","display_name":"Cincinnati Children's Hospital Medical Center","ror":"https://ror.org/01hcyya48","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1285204247"]},{"id":"https://openalex.org/I63135867","display_name":"University of Cincinnati","ror":"https://ror.org/01e3m7079","country_code":"US","type":"education","lineage":["https://openalex.org/I63135867"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anil G. Jegga","raw_affiliation_strings":["Division of Biomedical Informatics, Cincinnati Children&#x0027;s Hospital Medical Center, Cincinnati, OH, USA","Departments of Pediatrics and Computer Science, University of Cincinnati, Cincinnati, OH, USA"],"raw_orcid":"https://orcid.org/0000-0002-4881-7752","affiliations":[{"raw_affiliation_string":"Division of Biomedical Informatics, Cincinnati Children&#x0027;s Hospital Medical Center, Cincinnati, OH, USA","institution_ids":["https://openalex.org/I1285204247"]},{"raw_affiliation_string":"Departments of Pediatrics and Computer Science, University of Cincinnati, Cincinnati, OH, USA","institution_ids":["https://openalex.org/I63135867"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.131,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.88893938,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"19","issue":"5","first_page":"2596","last_page":"2604"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9890999794006348,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.791789174079895},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6778360605239868},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.5690445899963379},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5560886263847351},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.498443603515625},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.47858309745788574},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4525144398212433},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4258565902709961},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3971092998981476},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.21262803673744202},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2054140269756317},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2029632329940796},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.08368837833404541},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07630416750907898}],"concepts":[{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.791789174079895},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6778360605239868},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.5690445899963379},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5560886263847351},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.498443603515625},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.47858309745788574},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4525144398212433},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4258565902709961},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3971092998981476},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21262803673744202},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2054140269756317},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2029632329940796},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.08368837833404541},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07630416750907898},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1109/tcbb.2021.3082466","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3082466","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34014830","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34014830","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10038065","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10038065","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10038065/pdf/nihms-1841690.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE/ACM Trans Comput Biol Bioinform","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:10038065","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10038065","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10038065/pdf/nihms-1841690.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE/ACM Trans Comput Biol Bioinform","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2559964284","display_name":null,"funder_award_id":"1UG3TR002612","funder_id":"https://openalex.org/F4320337472","funder_display_name":"National Center for Advancing Translational Sciences"},{"id":"https://openalex.org/G7417259915","display_name":null,"funder_award_id":"1UG3TR002612","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337472","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3160009429.pdf","grobid_xml":"https://content.openalex.org/works/W3160009429.grobid-xml"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W339474362","https://openalex.org/W1451534462","https://openalex.org/W1941346671","https://openalex.org/W1965959073","https://openalex.org/W2028279608","https://openalex.org/W2035977761","https://openalex.org/W2077753096","https://openalex.org/W2101234009","https://openalex.org/W2105263940","https://openalex.org/W2109480754","https://openalex.org/W2113072832","https://openalex.org/W2119002393","https://openalex.org/W2124649657","https://openalex.org/W2132346182","https://openalex.org/W2140040463","https://openalex.org/W2145578524","https://openalex.org/W2147721411","https://openalex.org/W2159482845","https://openalex.org/W2170146596","https://openalex.org/W2177317049","https://openalex.org/W2539985226","https://openalex.org/W2579434750","https://openalex.org/W2594083602","https://openalex.org/W2595149823","https://openalex.org/W2604314403","https://openalex.org/W2612436700","https://openalex.org/W2618654088","https://openalex.org/W2753953057","https://openalex.org/W2787740662","https://openalex.org/W2809156537","https://openalex.org/W2920800083","https://openalex.org/W2934415457","https://openalex.org/W2940524715","https://openalex.org/W2945386547","https://openalex.org/W2949311246","https://openalex.org/W2952522777","https://openalex.org/W2952862095","https://openalex.org/W2962711740","https://openalex.org/W2962810718","https://openalex.org/W2962876161","https://openalex.org/W2964015378","https://openalex.org/W2983166786","https://openalex.org/W2989993402","https://openalex.org/W3000171350","https://openalex.org/W3087554161","https://openalex.org/W4255233046","https://openalex.org/W4285723986","https://openalex.org/W4293651439","https://openalex.org/W6675354045","https://openalex.org/W6726873649","https://openalex.org/W6737188399","https://openalex.org/W6744557953","https://openalex.org/W6748402259","https://openalex.org/W6754929296","https://openalex.org/W6761066196"],"related_works":["https://openalex.org/W2006667691","https://openalex.org/W2886266969","https://openalex.org/W4281673370","https://openalex.org/W2903687253","https://openalex.org/W4366527864","https://openalex.org/W1980001478","https://openalex.org/W2399140686","https://openalex.org/W3010058077","https://openalex.org/W2951512731","https://openalex.org/W3166711969"],"abstract_inverted_index":{"In-silico":[0],"drug":[1,21,81,103],"repositioning":[2],"or":[3,9,116],"predicting":[4],"new":[5],"indications":[6,111],"for":[7,28,64,101],"approved":[8],"late-stage":[10],"clinical":[11],"trial":[12],"drugs":[13,27],"is":[14,31],"a":[15,29,59],"resourceful":[16],"and":[17,36,43,52,82,91],"time-efficient":[18],"strategy":[19],"in":[20],"discovery.":[22],"However,":[23],"inferring":[24],"novel":[25,110],"candidate":[26],"disease":[30,83],"challenging,":[32],"given":[33],"the":[34,39,79,87,123],"heterogeneity":[35],"sparseness":[37],"of":[38,89,107,127],"underlying":[40],"biological":[41],"entities":[42],"their":[44],"relationships":[45],"(e.g.,":[46],"disease/drug":[47],"annotations).":[48],"By":[49],"integrating":[50],"drug-centric":[51],"disease-centric":[53],"annotations":[54],"as":[55],"multi-views,":[56],"we":[57,73],"propose":[58],"multi-view":[60],"graph":[61,75],"attention":[62,76],"network":[63,77],"indication":[65],"discovery":[66],"(MGATRx).":[67],"Unlike":[68],"most":[69],"current":[70],"similarity-based":[71],"methods,":[72],"employ":[74],"on":[78],"heterogeneous":[80],"data":[84],"to":[85],"learn":[86],"representation":[88],"nodes":[90],"identify":[92],"associations.":[93],"MGATRx":[94],"outperformed":[95],"four":[96],"other":[97],"state-of-art":[98],"methods":[99],"used":[100],"computational":[102],"repositioning.":[104],"Further,":[105],"several":[106],"our":[108],"predicted":[109],"are":[112,117],"either":[113],"currently":[114],"investigated":[115],"supported":[118],"by":[119],"literature":[120],"evidence,":[121],"demonstrating":[122],"overall":[124],"translational":[125],"utility":[126],"MGATRx.":[128]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
