{"id":"https://openalex.org/W3161231563","doi":"https://doi.org/10.1109/tcbb.2021.3079339","title":"Named Entity Aware Transfer Learning for Biomedical Factoid Question Answering","display_name":"Named Entity Aware Transfer Learning for Biomedical Factoid Question Answering","publication_year":2021,"publication_date":"2021-05-11","ids":{"openalex":"https://openalex.org/W3161231563","doi":"https://doi.org/10.1109/tcbb.2021.3079339","mag":"3161231563","pmid":"https://pubmed.ncbi.nlm.nih.gov/33974546"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2021.3079339","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3079339","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074149253","display_name":"Keqin Peng","orcid":"https://orcid.org/0000-0002-5270-9439"},"institutions":[{"id":"https://openalex.org/I82880672","display_name":"Beihang University","ror":"https://ror.org/00wk2mp56","country_code":"CN","type":"education","lineage":["https://openalex.org/I82880672"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Keqin Peng","raw_affiliation_strings":["State Key Laboratory of Software Development Environment, Beihang University, Beijing, China","Sino-French Engineer School, Beihang University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Software Development Environment, Beihang University, Beijing, China","institution_ids":["https://openalex.org/I82880672"]},{"raw_affiliation_string":"Sino-French Engineer School, Beihang University, Beijing, China","institution_ids":["https://openalex.org/I82880672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079167910","display_name":"Chuantao Yin","orcid":"https://orcid.org/0000-0002-0742-0804"},"institutions":[{"id":"https://openalex.org/I82880672","display_name":"Beihang University","ror":"https://ror.org/00wk2mp56","country_code":"CN","type":"education","lineage":["https://openalex.org/I82880672"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chuantao Yin","raw_affiliation_strings":["State Key Laboratory of Software Development Environment, Beihang University, Beijing, China","Sino-French Engineer School, Beihang University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Software Development Environment, Beihang University, Beijing, China","institution_ids":["https://openalex.org/I82880672"]},{"raw_affiliation_string":"Sino-French Engineer School, Beihang University, Beijing, China","institution_ids":["https://openalex.org/I82880672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055420596","display_name":"Wenge Rong","orcid":"https://orcid.org/0000-0002-4229-7215"},"institutions":[{"id":"https://openalex.org/I82880672","display_name":"Beihang University","ror":"https://ror.org/00wk2mp56","country_code":"CN","type":"education","lineage":["https://openalex.org/I82880672"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenge Rong","raw_affiliation_strings":["State Key Laboratory of Software Development Environment, Beihang University, Beijing, China","School of Computer Science and Engineering, Beihang University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Software Development Environment, Beihang University, Beijing, China","institution_ids":["https://openalex.org/I82880672"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Beihang University, Beijing, China","institution_ids":["https://openalex.org/I82880672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024599321","display_name":"Chenghua Lin","orcid":"https://orcid.org/0000-0003-3454-2468"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Chenghua Lin","raw_affiliation_strings":["Department of Computer Science, University of Sheffield, Sheffield, U.K"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sheffield, Sheffield, U.K","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007145568","display_name":"Deyu Zhou","orcid":"https://orcid.org/0000-0001-7702-9387"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Deyu Zhou","raw_affiliation_strings":["School of Computer Science and Engineering, Southeast University, Nanjing, Jiangsu, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Southeast University, Nanjing, Jiangsu, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100442123","display_name":"Zhang Xiong","orcid":"https://orcid.org/0000-0002-9421-1014"},"institutions":[{"id":"https://openalex.org/I82880672","display_name":"Beihang University","ror":"https://ror.org/00wk2mp56","country_code":"CN","type":"education","lineage":["https://openalex.org/I82880672"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhang Xiong","raw_affiliation_strings":["State Key Laboratory of Software Development Environment, Beihang University, Beijing, China","School of Computer Science and Engineering, Beihang University, Beijing, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Software Development Environment, Beihang University, Beijing, China","institution_ids":["https://openalex.org/I82880672"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Beihang University, Beijing, China","institution_ids":["https://openalex.org/I82880672"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5074149253"],"corresponding_institution_ids":["https://openalex.org/I82880672"],"apc_list":null,"apc_paid":null,"fwci":4.0587,"has_fulltext":false,"cited_by_count":30,"citation_normalized_percentile":{"value":0.94741259,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"19","issue":"4","first_page":"2365","last_page":"2376"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13274","display_name":"Expert finding and Q&A systems","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.965499997138977,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/question-answering","display_name":"Question answering","score":0.9238479137420654},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.850122332572937},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6145503520965576},{"id":"https://openalex.org/keywords/security-token","display_name":"Security token","score":0.5635541081428528},{"id":"https://openalex.org/keywords/word-embedding","display_name":"Word embedding","score":0.5232285857200623},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5174127817153931},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5010921955108643},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.4930844008922577},{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.484094500541687},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.47825613617897034},{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.46751147508621216},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.46506765484809875},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.356622576713562},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.06925854086875916}],"concepts":[{"id":"https://openalex.org/C44291984","wikidata":"https://www.wikidata.org/wiki/Q1074173","display_name":"Question answering","level":2,"score":0.9238479137420654},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.850122332572937},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6145503520965576},{"id":"https://openalex.org/C48145219","wikidata":"https://www.wikidata.org/wiki/Q1335365","display_name":"Security token","level":2,"score":0.5635541081428528},{"id":"https://openalex.org/C2777462759","wikidata":"https://www.wikidata.org/wiki/Q18395344","display_name":"Word embedding","level":3,"score":0.5232285857200623},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5174127817153931},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5010921955108643},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.4930844008922577},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.484094500541687},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.47825613617897034},{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.46751147508621216},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.46506765484809875},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.356622576713562},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.06925854086875916},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007858","descriptor_name":"Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/tcbb.2021.3079339","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3079339","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33974546","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33974546","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmh:oai:eprints.whiterose.ac.uk:177023","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.8100000023841858,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G1385510156","display_name":null,"funder_award_id":"61977003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W1497905029","https://openalex.org/W1499283522","https://openalex.org/W1534477342","https://openalex.org/W1968331929","https://openalex.org/W1975073368","https://openalex.org/W1981208470","https://openalex.org/W1987303875","https://openalex.org/W2039345667","https://openalex.org/W2054070929","https://openalex.org/W2064675550","https://openalex.org/W2070493638","https://openalex.org/W2079451707","https://openalex.org/W2107878631","https://openalex.org/W2131774270","https://openalex.org/W2157820340","https://openalex.org/W2169099542","https://openalex.org/W2173361515","https://openalex.org/W2403393286","https://openalex.org/W2510358553","https://openalex.org/W2562426122","https://openalex.org/W2587528408","https://openalex.org/W2591951831","https://openalex.org/W2798819017","https://openalex.org/W2911489562","https://openalex.org/W2913962323","https://openalex.org/W2938224028","https://openalex.org/W2951873305","https://openalex.org/W2962739339","https://openalex.org/W2963078909","https://openalex.org/W2963488798","https://openalex.org/W2963744614","https://openalex.org/W2963748441","https://openalex.org/W2963918774","https://openalex.org/W2964199361","https://openalex.org/W2964204621","https://openalex.org/W2964223283","https://openalex.org/W2970035587","https://openalex.org/W2970641574","https://openalex.org/W3009105572","https://openalex.org/W3013653849","https://openalex.org/W3013838212","https://openalex.org/W3013925767","https://openalex.org/W3095609828","https://openalex.org/W4212883601","https://openalex.org/W4288282820","https://openalex.org/W6636510571","https://openalex.org/W6683557909","https://openalex.org/W6685536428","https://openalex.org/W6690535333","https://openalex.org/W6712411526","https://openalex.org/W6713556587","https://openalex.org/W6728098186","https://openalex.org/W6739901393","https://openalex.org/W6761205521","https://openalex.org/W6761345506","https://openalex.org/W6763701032","https://openalex.org/W6765544429","https://openalex.org/W6780640107"],"related_works":["https://openalex.org/W2468279273","https://openalex.org/W2354198838","https://openalex.org/W1989130879","https://openalex.org/W2103419012","https://openalex.org/W2384605597","https://openalex.org/W2988126442","https://openalex.org/W2387743295","https://openalex.org/W2970530566","https://openalex.org/W1974414866","https://openalex.org/W2967478618"],"abstract_inverted_index":{"Biomedical":[0],"factoid":[1],"question":[2,10,23,94,121,131,141],"answering":[3,11,24,122],"is":[4,30],"an":[5],"important":[6,90],"task":[7],"in":[8,52,64,76,103],"biomedical":[9,65,77,93],"applications.":[12],"It":[13],"has":[14],"attracted":[15],"much":[16],"attention":[17],"because":[18],"of":[19,28,31,43,49,100],"its":[20],"reliability.":[21],"In":[22,80],"systems,":[25],"better":[26,138],"representation":[27],"words":[29],"great":[32],"importance,":[33],"and":[34,67,143,164,167],"proper":[35,83],"word":[36,84],"embedding":[37],"can":[38,176],"significantly":[39],"improve":[40,119,152],"the":[41,44,47,98,120,130,140,153,168],"performance":[42],"system.":[45],"With":[46],"success":[48],"pretrained":[50,58,69],"models":[51,59],"general":[53],"natural":[54],"language":[55],"processing":[56],"tasks,":[57],"have":[60,72,170],"been":[61,73],"widely":[62],"used":[63],"areas,":[66],"many":[68],"model-based":[70],"approaches":[71],"proven":[74],"effective":[75],"question-answering":[78],"tasks.":[79],"addition":[81],"to":[82,110,118,128,133,150],"embedding,":[85],"name":[86],"entities":[87],"also":[88],"provide":[89],"information":[91],"for":[92],"answering.":[95],"Inspired":[96],"by":[97],"concept":[99],"transfer":[101],"learning,":[102],"this":[104],"study,":[105],"we":[106,125,147],"developed":[107],"a":[108,114],"mechanism":[109],"fine-tune":[111],"BioBERT":[112],"with":[113],"named":[115],"entity":[116],"dataset":[117],"performance.":[123,155],"Furthermore,":[124],"applied":[126],"BiLSTM":[127],"encode":[129],"text":[132],"obtain":[134],"sentence-level":[135],"information.":[136],"To":[137],"combine":[139],"level":[142,145],"token":[144],"information,":[146],"use":[148],"bagging":[149],"further":[151],"overall":[154],"The":[156],"proposed":[157,174],"framework":[158,175],"was":[159],"evaluated":[160],"on":[161],"BioASQ":[162],"6b":[163],"7b":[165],"datasets,":[166],"results":[169],"shown":[171],"that":[172],"our":[173],"outperform":[177],"all":[178],"baselines.":[179]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
