{"id":"https://openalex.org/W3121027314","doi":"https://doi.org/10.1109/tcbb.2021.3050102","title":"DPCMNE: Detecting Protein Complexes From Protein-Protein Interaction Networks Via Multi-Level Network Embedding","display_name":"DPCMNE: Detecting Protein Complexes From Protein-Protein Interaction Networks Via Multi-Level Network Embedding","publication_year":2021,"publication_date":"2021-01-09","ids":{"openalex":"https://openalex.org/W3121027314","doi":"https://doi.org/10.1109/tcbb.2021.3050102","mag":"3121027314","pmid":"https://pubmed.ncbi.nlm.nih.gov/33417563"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2021.3050102","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3050102","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077069371","display_name":"Xiangmao Meng","orcid":"https://orcid.org/0000-0002-7966-551X"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangmao Meng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China","School of Computer Science and Engineering, Central South University, Changsha, Hunan, China, (e-mail: mxmanhui@csu.edu.cn)"],"raw_orcid":"https://orcid.org/0000-0002-7966-551X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan, China, (e-mail: mxmanhui@csu.edu.cn)","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046328933","display_name":"Ju Xiang","orcid":"https://orcid.org/0000-0002-3045-5706"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I165911609","display_name":"Changsha Medical University","ror":"https://ror.org/05dt7z971","country_code":"CN","type":"education","lineage":["https://openalex.org/I165911609"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ju Xiang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China","Neuroscience Research Center & Department of Basic Medical Sciences, Changsha Medical University, 216793 Changsha, Hunan, China, (e-mail: xiangju@csu.edu.cn)"],"raw_orcid":"https://orcid.org/0000-0002-3045-5706","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Neuroscience Research Center & Department of Basic Medical Sciences, Changsha Medical University, 216793 Changsha, Hunan, China, (e-mail: xiangju@csu.edu.cn)","institution_ids":["https://openalex.org/I165911609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044328870","display_name":"Ruiqing Zheng","orcid":"https://orcid.org/0000-0001-6372-6798"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruiqing Zheng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China","Computer Science, Central South University, Changsha, Hunan, China, (e-mail: rqzheng@csu.edu.cn)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Computer Science, Central South University, Changsha, Hunan, China, (e-mail: rqzheng@csu.edu.cn)","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK, Canada","[Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, Saskatchewan Canada S7N 5A9 (e-mail: faw341@mail.usask.ca)]"],"raw_orcid":"https://orcid.org/0000-0002-4593-9332","affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK, Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"[Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, Saskatchewan Canada S7N 5A9 (e-mail: faw341@mail.usask.ca)]","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China","Computer Science, Central South University, Changsha, Hunan China (e-mail: limin@mail.csu.edu.cn)"],"raw_orcid":"https://orcid.org/0000-0002-0188-1394","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Computer Science, Central South University, Changsha, Hunan China (e-mail: limin@mail.csu.edu.cn)","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.0134,"has_fulltext":false,"cited_by_count":63,"citation_normalized_percentile":{"value":0.92539971,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"19","issue":"3","first_page":"1592","last_page":"1602"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6588928699493408},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.6485756635665894},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5410906076431274},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.528556227684021},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.519275426864624},{"id":"https://openalex.org/keywords/granularity","display_name":"Granularity","score":0.472469300031662},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45049986243247986},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.38829928636550903},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3862103521823883},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3842126727104187},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3474491238594055},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.32753849029541016},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21266445517539978},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.207533061504364},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.08203306794166565}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6588928699493408},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.6485756635665894},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5410906076431274},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.528556227684021},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.519275426864624},{"id":"https://openalex.org/C177774035","wikidata":"https://www.wikidata.org/wiki/Q1246948","display_name":"Granularity","level":2,"score":0.472469300031662},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45049986243247986},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.38829928636550903},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3862103521823883},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3842126727104187},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3474491238594055},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.32753849029541016},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21266445517539978},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.207533061504364},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.08203306794166565},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2021.3050102","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2021.3050102","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33417563","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33417563","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G220451815","display_name":null,"funder_award_id":"2019CB1007","funder_id":"https://openalex.org/F4320321471","funder_display_name":"Hunan Provincial Science and Technology Department"},{"id":"https://openalex.org/G2413966837","display_name":null,"funder_award_id":"2282019SYLB004","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G4043378463","display_name":null,"funder_award_id":"61832019","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321471","display_name":"Hunan Provincial Science and Technology Department","ror":"https://ror.org/04qgr7x96"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W1485582261","https://openalex.org/W1888005072","https://openalex.org/W1974515660","https://openalex.org/W1979899431","https://openalex.org/W1983345514","https://openalex.org/W1983614185","https://openalex.org/W1986214964","https://openalex.org/W1988496202","https://openalex.org/W1994505288","https://openalex.org/W2004353149","https://openalex.org/W2030006812","https://openalex.org/W2050721857","https://openalex.org/W2068835382","https://openalex.org/W2082565035","https://openalex.org/W2090422756","https://openalex.org/W2100371004","https://openalex.org/W2107067224","https://openalex.org/W2117720828","https://openalex.org/W2128900650","https://openalex.org/W2130687290","https://openalex.org/W2131681506","https://openalex.org/W2136850043","https://openalex.org/W2140280811","https://openalex.org/W2144393227","https://openalex.org/W2154851992","https://openalex.org/W2158217645","https://openalex.org/W2160313295","https://openalex.org/W2160429376","https://openalex.org/W2474147915","https://openalex.org/W2575389965","https://openalex.org/W2700550412","https://openalex.org/W2750770743","https://openalex.org/W2775217026","https://openalex.org/W2780577559","https://openalex.org/W2806781084","https://openalex.org/W2896488859","https://openalex.org/W2899065368","https://openalex.org/W2905614462","https://openalex.org/W2910225981","https://openalex.org/W2911569307","https://openalex.org/W2911932738","https://openalex.org/W2912312581","https://openalex.org/W2916479752","https://openalex.org/W2917858269","https://openalex.org/W2918402879","https://openalex.org/W2918882492","https://openalex.org/W2931795699","https://openalex.org/W2949332308","https://openalex.org/W2962756421","https://openalex.org/W2962975498","https://openalex.org/W2977933764","https://openalex.org/W2978950048","https://openalex.org/W3004684479","https://openalex.org/W3007888226","https://openalex.org/W3008459824","https://openalex.org/W3099768174","https://openalex.org/W3104097132","https://openalex.org/W3141892660","https://openalex.org/W3177399989"],"related_works":["https://openalex.org/W2931688134","https://openalex.org/W2377919138","https://openalex.org/W2378857091","https://openalex.org/W4256502920","https://openalex.org/W103652678","https://openalex.org/W4226090359","https://openalex.org/W2999756192","https://openalex.org/W1081706099","https://openalex.org/W2370730867","https://openalex.org/W1968265719"],"abstract_inverted_index":{"Biological":[0],"functions":[1],"of":[2,14,19,46,95,135,138,157,184,191,214,224,231,248],"a":[3,101,120,164],"cell":[4],"are":[5,149,242],"typically":[6],"carried":[7],"out":[8],"through":[9],"protein":[10,15,28,42,61,79,133,155,172,185,237],"complexes.":[11,43],"The":[12,140,207],"detection":[13,220],"complexes":[16,80,173,238],"is":[17,124,168,196],"therefore":[18],"great":[20],"significance":[21],"for":[22],"understanding":[23],"the":[24,31,47,52,64,74,89,108,145,153,158,175,181,189,212,229],"cellular":[25],"organizations":[26],"and":[27,91,226],"functions.":[29],"In":[30],"past":[32],"decades,":[33],"many":[34],"computational":[35],"methods":[36,49,221],"have":[37],"been":[38],"proposed":[39,193],"to":[40,56,77,105,131,151,170],"detect":[41,78,171],"However,":[44],"most":[45],"existing":[48],"just":[50],"search":[51],"local":[53,90],"topological":[54,66,93],"information":[55,94],"mine":[57],"dense":[58],"subgraphs":[59],"as":[60],"complexes,":[62],"ignoring":[63],"global":[65,92],"information.":[67],"To":[68,187],"tackle":[69],"this":[70],"issue,":[71],"we":[72],"propose":[73],"DPCMNE":[75,99,195,215,241],"method":[76,123],"via":[81],"multi-level":[82,115],"network":[83,113,121,178],"embedding.":[84],"It":[85],"can":[86],"preserve":[87],"both":[88],"biological":[96],"networks.":[97,118],"First,":[98],"employs":[100],"hierarchical":[102],"compressing":[103],"strategy":[104,167],"recursively":[106],"compress":[107],"input":[109,160],"protein-protein":[110],"interaction":[111],"(PPI)":[112],"into":[114],"smaller":[116,128],"PPI":[117,129,147,161,177],"Then,":[119],"embedding":[122],"applied":[125],"on":[126,203],"these":[127],"networks":[130,148],"learn":[132],"embeddings":[134,141,156],"different":[136],"levels":[137],"granularity.":[139],"learned":[142],"from":[143],"all":[144],"compressed":[146],"concatenated":[150],"represent":[152],"final":[154],"original":[159],"network.":[162],"Finally,":[163],"core-attachment":[165],"based":[166],"adopted":[169],"in":[174,222,246],"weighted":[176],"constructed":[179],"by":[180,240],"pairwise":[182],"similarity":[183],"embeddings.":[186],"assess":[188],"efficiency":[190],"our":[192],"method,":[194],"compared":[197],"with":[198],"other":[199],"eight":[200],"clustering":[201],"algorithms":[202],"two":[204],"yeast":[205],"datasets.":[206],"experimental":[208],"results":[209,230],"show":[210],"that":[211,236],"performance":[213],"outperforms":[216],"those":[217],"state-of-the-art":[218],"complex":[219],"terms":[223,247],"F1":[225],"F1+Acc.":[227],"Furthermore,":[228],"functional":[232],"enrichment":[233],"analysis":[234],"indicate":[235],"detected":[239],"more":[243],"biologically":[244],"significant":[245],"P-score.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":11},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":15},{"year":2021,"cited_by_count":6}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2021-01-18T00:00:00"}
