{"id":"https://openalex.org/W3110734869","doi":"https://doi.org/10.1109/tcbb.2020.3044230","title":"Neural Network and Random Forest Models in Protein Function Prediction","display_name":"Neural Network and Random Forest Models in Protein Function Prediction","publication_year":2020,"publication_date":"2020-12-11","ids":{"openalex":"https://openalex.org/W3110734869","doi":"https://doi.org/10.1109/tcbb.2020.3044230","mag":"3110734869","pmid":"https://pubmed.ncbi.nlm.nih.gov/33306472"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2020.3044230","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.3044230","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/9788107/09291483.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ieeexplore.ieee.org/ielx7/8857/9788107/09291483.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058939594","display_name":"Kai Hakala","orcid":"https://orcid.org/0000-0001-8943-7011"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Kai Hakala","raw_affiliation_strings":["Department of Future Technologies, University of Turku, Turku, Finland","University of Turku Graduate School (UTUGS), Turku, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Future Technologies, University of Turku, Turku, Finland","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"University of Turku Graduate School (UTUGS), Turku, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000080545","display_name":"Suwisa Kaewphan","orcid":"https://orcid.org/0000-0001-8534-1215"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Suwisa Kaewphan","raw_affiliation_strings":["Department of Future Technologies, University of Turku, Turku, Finland","Turku Centre for Computer Science (TUCS), Turku, Finland","University of Turku Graduate School (UTUGS), Turku, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Future Technologies, University of Turku, Turku, Finland","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"Turku Centre for Computer Science (TUCS), Turku, Finland","institution_ids":["https://openalex.org/I183173800"]},{"raw_affiliation_string":"University of Turku Graduate School (UTUGS), Turku, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049143500","display_name":"Jari Bj\u00f6rne","orcid":"https://orcid.org/0000-0003-1722-6404"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jari Bjorne","raw_affiliation_strings":["Department of Future Technologies, University of Turku, Turku, Finland","University of Turku Graduate School (UTUGS), Turku, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Future Technologies, University of Turku, Turku, Finland","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"University of Turku Graduate School (UTUGS), Turku, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086256360","display_name":"Farrokh Mehryary","orcid":"https://orcid.org/0000-0002-5555-2828"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Farrokh Mehryary","raw_affiliation_strings":["Department of Future Technologies, University of Turku, Turku, Finland","University of Turku Graduate School (UTUGS), Turku, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Future Technologies, University of Turku, Turku, Finland","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"University of Turku Graduate School (UTUGS), Turku, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022491386","display_name":"Hans Moen","orcid":"https://orcid.org/0000-0003-1418-7892"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Hans Moen","raw_affiliation_strings":["Department of Future Technologies, University of Turku, Turku, Finland","University of Turku Graduate School (UTUGS), Turku, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Future Technologies, University of Turku, Turku, Finland","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"University of Turku Graduate School (UTUGS), Turku, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016000456","display_name":"Martti Tolvanen","orcid":"https://orcid.org/0000-0003-3434-7646"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Martti Tolvanen","raw_affiliation_strings":["Department of Future Technologies, University of Turku, Turku, Finland","University of Turku Graduate School (UTUGS), Turku, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Future Technologies, University of Turku, Turku, Finland","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"University of Turku Graduate School (UTUGS), Turku, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105839982","display_name":"Tapio Salakoski","orcid":null},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tapio Salakoski","raw_affiliation_strings":["Department of Future Technologies, University of Turku, Turku, Finland","University of Turku Graduate School (UTUGS), Turku, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Future Technologies, University of Turku, Turku, Finland","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"University of Turku Graduate School (UTUGS), Turku, Finland","institution_ids":["https://openalex.org/I155660961"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019929457","display_name":"Filip Ginter","orcid":"https://orcid.org/0000-0002-5484-6103"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Filip Ginter","raw_affiliation_strings":["Department of Future Technologies, University of Turku, Turku, Finland","University of Turku Graduate School (UTUGS), Turku, Finland"],"affiliations":[{"raw_affiliation_string":"Department of Future Technologies, University of Turku, Turku, Finland","institution_ids":["https://openalex.org/I155660961"]},{"raw_affiliation_string":"University of Turku Graduate School (UTUGS), Turku, Finland","institution_ids":["https://openalex.org/I155660961"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5058939594"],"corresponding_institution_ids":["https://openalex.org/I155660961"],"apc_list":null,"apc_paid":{"value":1726,"currency":"EUR","value_usd":1861},"fwci":1.4187,"has_fulltext":true,"cited_by_count":27,"citation_normalized_percentile":{"value":0.81747006,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"19","issue":"3","first_page":"1772","last_page":"1781"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.8096185922622681},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7589535117149353},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.6892808675765991},{"id":"https://openalex.org/keywords/ensemble-forecasting","display_name":"Ensemble forecasting","score":0.6437386274337769},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5744372010231018},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5709437727928162},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.559027910232544},{"id":"https://openalex.org/keywords/ensemble-learning","display_name":"Ensemble learning","score":0.5333758592605591},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.523200273513794},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5139696002006531},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.4473867416381836},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4322276711463928},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.41219183802604675},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4118986427783966},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.20622104406356812},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09588757157325745}],"concepts":[{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.8096185922622681},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7589535117149353},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.6892808675765991},{"id":"https://openalex.org/C119898033","wikidata":"https://www.wikidata.org/wiki/Q3433888","display_name":"Ensemble forecasting","level":2,"score":0.6437386274337769},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5744372010231018},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5709437727928162},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.559027910232544},{"id":"https://openalex.org/C45942800","wikidata":"https://www.wikidata.org/wiki/Q245652","display_name":"Ensemble learning","level":2,"score":0.5333758592605591},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.523200273513794},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5139696002006531},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.4473867416381836},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4322276711463928},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.41219183802604675},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4118986427783966},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.20622104406356812},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09588757157325745},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/tcbb.2020.3044230","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.3044230","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/9788107/09291483.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:33306472","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33306472","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmh:oai:www.utupub.fi:10024/183630","is_oa":false,"landing_page_url":"https://www.utupub.fi/handle/10024/183630","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1109/tcbb.2020.3044230","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.3044230","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/9788107/09291483.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6399999856948853}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3110734869.pdf","grobid_xml":"https://content.openalex.org/works/W3110734869.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1144107824","https://openalex.org/W1602477282","https://openalex.org/W1970378328","https://openalex.org/W2021495307","https://openalex.org/W2040884411","https://openalex.org/W2043338013","https://openalex.org/W2054118996","https://openalex.org/W2055043387","https://openalex.org/W2070366335","https://openalex.org/W2079665010","https://openalex.org/W2095705004","https://openalex.org/W2096173332","https://openalex.org/W2101234009","https://openalex.org/W2101291993","https://openalex.org/W2102814386","https://openalex.org/W2103017472","https://openalex.org/W2112492958","https://openalex.org/W2117486996","https://openalex.org/W2127563440","https://openalex.org/W2128538135","https://openalex.org/W2141816565","https://openalex.org/W2142678031","https://openalex.org/W2142678478","https://openalex.org/W2143210482","https://openalex.org/W2143250705","https://openalex.org/W2145427519","https://openalex.org/W2150051880","https://openalex.org/W2151831732","https://openalex.org/W2158714788","https://openalex.org/W2163910672","https://openalex.org/W2163957306","https://openalex.org/W2206890303","https://openalex.org/W2227395312","https://openalex.org/W2252523470","https://openalex.org/W2433743436","https://openalex.org/W2559191318","https://openalex.org/W2615066396","https://openalex.org/W2733976714","https://openalex.org/W2785273668","https://openalex.org/W2804935296","https://openalex.org/W2889498145","https://openalex.org/W2896457183","https://openalex.org/W2900359059","https://openalex.org/W2950595506","https://openalex.org/W2951731136","https://openalex.org/W2952218450","https://openalex.org/W2963457143","https://openalex.org/W2963614249","https://openalex.org/W2989608901","https://openalex.org/W3105389349","https://openalex.org/W4210702584","https://openalex.org/W6674330103","https://openalex.org/W6675354045","https://openalex.org/W6684191040","https://openalex.org/W6685053522","https://openalex.org/W6755207826"],"related_works":["https://openalex.org/W2944292463","https://openalex.org/W3014252901","https://openalex.org/W2188759683","https://openalex.org/W2794896638","https://openalex.org/W4317376680","https://openalex.org/W3080944905","https://openalex.org/W4360777922","https://openalex.org/W2891633941","https://openalex.org/W3208169454","https://openalex.org/W4390905871"],"abstract_inverted_index":{"Over":[0],"the":[1,4,15,26,42,54,99,117,123,132,161,170],"past":[2],"decade,":[3],"demand":[5],"for":[6],"automated":[7],"protein":[8,45,82],"function":[9,27],"prediction":[10,28],"has":[11],"increased":[12],"due":[13],"to":[14,41],"volume":[16],"of":[17,131,148],"newly":[18],"sequenced":[19],"proteins.":[20],"In":[21,86,122,153],"this":[22,154],"paper,":[23,155],"we":[24,88,156],"address":[25],"task":[29],"by":[30,58],"developing":[31],"an":[32,49,181],"ensemble":[33,50,137],"system":[34,51],"automatically":[35],"assigning":[36],"Gene":[37],"Ontology":[38],"(GO)":[39],"terms":[40],"given":[43],"input":[44],"sequence.":[46],"We":[47],"develop":[48],"which":[52,126],"combines":[53],"GO":[55],"predictions":[56],"made":[57],"random":[59],"forest":[60],"(RF)":[61],"and":[62,69,81,119,158,173],"neural":[63],"network":[64],"(NN)":[65],"classifiers.":[66],"Both":[67],"RF":[68],"NN":[70,94],"models":[71,167],"rely":[72],"on":[73,90,128],"features":[74],"derived":[75],"from":[76],"BLAST":[77],"sequence":[78,102],"alignments,":[79],"taxonomy":[80],"signature":[83],"analysis":[84],"tools.":[85],"addition,":[87],"report":[89],"experiments":[91],"with":[92,169],"a":[93,108],"model":[95,138],"that":[96],"directly":[97],"analyzes":[98],"amino":[100],"acid":[101],"as":[103,116,180],"its":[104],"sole":[105],"input,":[106],"using":[107],"convolutional":[109],"layer.":[110],"The":[111],"Swiss-Prot":[112],"database":[113],"is":[114],"used":[115],"training":[118],"evaluation":[120],"data.":[121],"CAFA3":[124],"evaluation,":[125],"relies":[127],"experimental":[129],"verification":[130],"functional":[133],"predictions,":[134],"our":[135],"submitted":[136,151],"demonstrates":[139],"competitive":[140],"performance":[141],"ranking":[142],"among":[143],"top-10":[144],"best-performing":[145],"systems":[146],"out":[147],"over":[149],"100":[150],"systems.":[152],"evaluate":[157],"further":[159],"improve":[160],"CAFA3-submitted":[162],"system.":[163],"Our":[164],"machine":[165],"learning":[166],"together":[168],"data":[171],"pre-processing":[172],"feature":[174],"generation":[175],"tools":[176],"are":[177],"publicly":[178],"available":[179],"open":[182],"source":[183],"software":[184],"at":[185],"https://github.com/TurkuNLP/CAFA3.":[186]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":1}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
