{"id":"https://openalex.org/W3088452016","doi":"https://doi.org/10.1109/tcbb.2020.3026787","title":"Learning Useful Representations of DNA Sequences From ChIP-Seq Datasets for Exploring Transcription Factor Binding Specificities","display_name":"Learning Useful Representations of DNA Sequences From ChIP-Seq Datasets for Exploring Transcription Factor Binding Specificities","publication_year":2020,"publication_date":"2020-09-25","ids":{"openalex":"https://openalex.org/W3088452016","doi":"https://doi.org/10.1109/tcbb.2020.3026787","mag":"3088452016","pmid":"https://pubmed.ncbi.nlm.nih.gov/32976105"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2020.3026787","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.3026787","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010017304","display_name":"Lijun Quan","orcid":"https://orcid.org/0000-0003-4551-4198"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lijun Quan","raw_affiliation_strings":["School of Computer Science and Technology, and the Provincial Key Laboratory for Computer Information Processing Technology, Soochow University, Suzhou, China"],"raw_orcid":"https://orcid.org/0000-0003-4551-4198","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, and the Provincial Key Laboratory for Computer Information Processing Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103102156","display_name":"Xiaoyu Sun","orcid":"https://orcid.org/0000-0003-3895-0047"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyu Sun","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046298813","display_name":"Jian Wu","orcid":"https://orcid.org/0000-0001-7065-9917"},"institutions":[{"id":"https://openalex.org/I180662265","display_name":"China Mobile (China)","ror":"https://ror.org/05gftfe97","country_code":"CN","type":"company","lineage":["https://openalex.org/I180662265"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Wu","raw_affiliation_strings":["China Mobile (Suzhou)Software Technology Co., Ltd, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Mobile (Suzhou)Software Technology Co., Ltd, Suzhou, China","institution_ids":["https://openalex.org/I180662265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053512734","display_name":"Jie Mei","orcid":"https://orcid.org/0000-0003-4221-6275"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Mei","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103112264","display_name":"Liqun Huang","orcid":"https://orcid.org/0000-0002-7675-4867"},"institutions":[{"id":"https://openalex.org/I180662265","display_name":"China Mobile (China)","ror":"https://ror.org/05gftfe97","country_code":"CN","type":"company","lineage":["https://openalex.org/I180662265"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liqun Huang","raw_affiliation_strings":["China Mobile (Suzhou)Software Technology Co., Ltd, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Mobile (Suzhou)Software Technology Co., Ltd, Suzhou, China","institution_ids":["https://openalex.org/I180662265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061966798","display_name":"Ruji He","orcid":null},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruji He","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073740698","display_name":"Liangpeng Nie","orcid":"https://orcid.org/0000-0003-4210-8039"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liangpeng Nie","raw_affiliation_strings":["School of Computer Science and Technology, Soochow University, Suzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100402050","display_name":"Yu Chen","orcid":"https://orcid.org/0000-0002-5254-200X"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Chen","raw_affiliation_strings":["School of Computer Science and Technology, and the Provincial Key Laboratory for Computer Information Processing Technology, Soochow University, Suzhou, China"],"raw_orcid":"https://orcid.org/0000-0002-5254-200X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, and the Provincial Key Laboratory for Computer Information Processing Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061252858","display_name":"Qiang Lyu","orcid":"https://orcid.org/0000-0003-2371-835X"},"institutions":[{"id":"https://openalex.org/I3923682","display_name":"Soochow University","ror":"https://ror.org/05t8y2r12","country_code":"CN","type":"education","lineage":["https://openalex.org/I3923682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang Lyu","raw_affiliation_strings":["School of Computer Science and Technology, and the Provincial Key Laboratory for Computer Information Processing Technology, Soochow University, Suzhou, China"],"raw_orcid":"https://orcid.org/0000-0003-2371-835X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, and the Provincial Key Laboratory for Computer Information Processing Technology, Soochow University, Suzhou, China","institution_ids":["https://openalex.org/I3923682"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1627,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.4963785,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"19","issue":"2","first_page":"998","last_page":"1008"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6399586796760559},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6324572563171387},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5681687593460083},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.5535316467285156},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5083202719688416},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.47523120045661926},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.46869778633117676},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.44182470440864563},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.322221040725708},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.32205522060394287},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2506990432739258},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14025503396987915}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6399586796760559},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6324572563171387},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5681687593460083},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.5535316467285156},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5083202719688416},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.47523120045661926},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.46869778633117676},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.44182470440864563},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.322221040725708},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.32205522060394287},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2506990432739258},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14025503396987915},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2020.3026787","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.3026787","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32976105","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32976105","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5199999809265137,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G4447477790","display_name":null,"funder_award_id":"31801108","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320327518","display_name":"Priority Academic Program Development of Jiangsu Higher Education Institutions","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W655820313","https://openalex.org/W1019830208","https://openalex.org/W1499253590","https://openalex.org/W1510154212","https://openalex.org/W1556386043","https://openalex.org/W1836465849","https://openalex.org/W1965425724","https://openalex.org/W1970312964","https://openalex.org/W1981371363","https://openalex.org/W1990893875","https://openalex.org/W1991750682","https://openalex.org/W1993616000","https://openalex.org/W2008444931","https://openalex.org/W2012114217","https://openalex.org/W2020984122","https://openalex.org/W2029201460","https://openalex.org/W2034522936","https://openalex.org/W2036054070","https://openalex.org/W2041877620","https://openalex.org/W2062812959","https://openalex.org/W2064675550","https://openalex.org/W2078059415","https://openalex.org/W2079501676","https://openalex.org/W2083191413","https://openalex.org/W2101234009","https://openalex.org/W2102619694","https://openalex.org/W2102904139","https://openalex.org/W2112796928","https://openalex.org/W2116261113","https://openalex.org/W2122585011","https://openalex.org/W2140689550","https://openalex.org/W2158116492","https://openalex.org/W2158698691","https://openalex.org/W2166898290","https://openalex.org/W2167296922","https://openalex.org/W2172174991","https://openalex.org/W2251771443","https://openalex.org/W2259938310","https://openalex.org/W2270152626","https://openalex.org/W2278076700","https://openalex.org/W2336509392","https://openalex.org/W2481378334","https://openalex.org/W2546302380","https://openalex.org/W2583337817","https://openalex.org/W2589838901","https://openalex.org/W2795735651","https://openalex.org/W2896262061","https://openalex.org/W2899616402","https://openalex.org/W2900648630","https://openalex.org/W2911253301","https://openalex.org/W2918598256","https://openalex.org/W2937172564","https://openalex.org/W2953306855","https://openalex.org/W3003257820","https://openalex.org/W4246023066","https://openalex.org/W6638667902","https://openalex.org/W6675354045","https://openalex.org/W6682691769","https://openalex.org/W6733030818"],"related_works":["https://openalex.org/W2068608913","https://openalex.org/W3124914020","https://openalex.org/W4375867731","https://openalex.org/W2141033859","https://openalex.org/W2077542787","https://openalex.org/W2156434174","https://openalex.org/W2071701083","https://openalex.org/W2383687187","https://openalex.org/W2121496884","https://openalex.org/W4380075502"],"abstract_inverted_index":{"Deep":[0],"learning":[1,17,45,58],"has":[2],"been":[3],"successfully":[4],"applied":[5],"to":[6,19,36,95,125,134],"surprisingly":[7],"different":[8],"domains.":[9],"Researchers":[10],"and":[11,74,106,133],"practitioners":[12],"are":[13],"employing":[14],"trained":[15,56],"deep":[16,44],"models":[18],"enrich":[20],"our":[21,57],"knowledge.":[22],"Transcription":[23],"factors":[24],"(TFs)are":[25],"essential":[26],"for":[27,99,144,152],"regulating":[28],"gene":[29],"expression":[30],"in":[31],"all":[32],"organisms":[33],"by":[34],"binding":[35,53,142],"specific":[37],"DNA":[38],"sequences.":[39],"Here,":[40],"we":[41,109],"designed":[42],"a":[43],"model":[46,59],"named":[47],"SemanticCS":[48,112,122,153],"(Semantic":[49],"ChIP-seq)to":[50],"predict":[51],"TF":[52],"specificities.":[54],"We":[55],"on":[60,140],"an":[61],"ensemble":[62],"of":[63,138],"ChIP-seq":[64],"datasets":[65],"(Multi-TF-cell)to":[66],"learn":[67],"useful":[68],"intermediate":[69],"features":[70],"across":[71],"multiple":[72],"TFs":[73],"cells.":[75],"To":[76],"interpret":[77],"these":[78,89],"feature":[79],"vectors,":[80],"visualization":[81],"analysis":[82],"was":[83],"used.":[84],"Our":[85],"results":[86],"indicate":[87],"that":[88,111,129],"learned":[90],"representations":[91],"can":[92,123],"be":[93],"used":[94],"train":[96],"shallow":[97],"machines":[98],"other":[100,114],"tasks.":[101],"Using":[102],"diverse":[103],"experimental":[104,120],"data":[105],"evaluation":[107],"metrics,":[108],"show":[110],"outperforms":[113],"popular":[115],"methods.":[116],"In":[117],"addition,":[118],"from":[119],"data,":[121],"help":[124],"identify":[126],"the":[127,136,141,145],"substitutions":[128,139],"cause":[130],"regulatory":[131],"abnormalities":[132],"evaluate":[135],"effect":[137],"affinity":[143],"RXR":[146],"transcription":[147],"factor.":[148],"The":[149],"online":[150],"server":[151],"is":[154],"freely":[155],"available":[156],"at":[157],"http://qianglab.scst.suda.edu.cn/semanticCS/.":[158]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
