{"id":"https://openalex.org/W3037788059","doi":"https://doi.org/10.1109/tcbb.2020.3004970","title":"<i>JUPPI</i>: A Multi-Level Feature Based Method for PPI Prediction and a Refined Strategy for Performance Assessment","display_name":"<i>JUPPI</i>: A Multi-Level Feature Based Method for PPI Prediction and a Refined Strategy for Performance Assessment","publication_year":2020,"publication_date":"2020-06-26","ids":{"openalex":"https://openalex.org/W3037788059","doi":"https://doi.org/10.1109/tcbb.2020.3004970","mag":"3037788059","pmid":"https://pubmed.ncbi.nlm.nih.gov/32750875"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2020.3004970","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.3004970","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Anup Kumar Halder","orcid":"https://orcid.org/0000-0001-5715-7154"},"institutions":[{"id":"https://openalex.org/I170979836","display_name":"Jadavpur University","ror":"https://ror.org/02af4h012","country_code":"IN","type":"education","lineage":["https://openalex.org/I170979836"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Anup Kumar Halder","raw_affiliation_strings":["Department of Computer Science and Engineering, Jadavpur University, Kolkata, West Bengal, India","[CSE, Jadavpur University, 30167 Kolkata, West Bengal India 700032 (e-mail: anup21.halder@gmail.com)]"],"raw_orcid":"https://orcid.org/0000-0001-5715-7154","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Jadavpur University, Kolkata, West Bengal, India","institution_ids":["https://openalex.org/I170979836"]},{"raw_affiliation_string":"[CSE, Jadavpur University, 30167 Kolkata, West Bengal India 700032 (e-mail: anup21.halder@gmail.com)]","institution_ids":["https://openalex.org/I170979836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085298948","display_name":"Soumyendu Sekhar Bandyopadhyay","orcid":"https://orcid.org/0000-0003-3530-2503"},"institutions":[{"id":"https://openalex.org/I170979836","display_name":"Jadavpur University","ror":"https://ror.org/02af4h012","country_code":"IN","type":"education","lineage":["https://openalex.org/I170979836"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Soumyendu Sekhar Bandyopadhyay","raw_affiliation_strings":["Department of Computer Science and Engineering, Jadavpur University, Kolkata, West Bengal, India","[CSE, Jadavpur University, 30167 Kolkata, West Bengal India (e-mail: soumyabane@gmail.com)]"],"raw_orcid":"https://orcid.org/0000-0003-3530-2503","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Jadavpur University, Kolkata, West Bengal, India","institution_ids":["https://openalex.org/I170979836"]},{"raw_affiliation_string":"[CSE, Jadavpur University, 30167 Kolkata, West Bengal India (e-mail: soumyabane@gmail.com)]","institution_ids":["https://openalex.org/I170979836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018474833","display_name":"Piyali Chatterjee","orcid":"https://orcid.org/0000-0002-7655-0485"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Piyali Chatterjee","raw_affiliation_strings":["Department of Computer Science and Engineering, Netaji Subhash Engineering College, Kolkata, West Bengal, India","[Computer Science and Engineering, Netaji Subhash Engineering College, 418379 Kolkata, West Bengal India (e-mail: piyali.gini@gmail.com)]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Netaji Subhash Engineering College, Kolkata, West Bengal, India","institution_ids":[]},{"raw_affiliation_string":"[Computer Science and Engineering, Netaji Subhash Engineering College, 418379 Kolkata, West Bengal India (e-mail: piyali.gini@gmail.com)]","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000210772","display_name":"Mita Nasipuri","orcid":"https://orcid.org/0000-0002-3906-5309"},"institutions":[{"id":"https://openalex.org/I170979836","display_name":"Jadavpur University","ror":"https://ror.org/02af4h012","country_code":"IN","type":"education","lineage":["https://openalex.org/I170979836"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Mita Nasipuri","raw_affiliation_strings":["Department of Computer Science and Engineering, Jadavpur University, Kolkata, West Bengal, India","[Computer Science and Engineering, Jadavpur University, 30167 Kolkata, West Bengal India (e-mail: mitanasipuri@gmail.com)]"],"raw_orcid":"https://orcid.org/0000-0002-3906-5309","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Jadavpur University, Kolkata, West Bengal, India","institution_ids":["https://openalex.org/I170979836"]},{"raw_affiliation_string":"[Computer Science and Engineering, Jadavpur University, 30167 Kolkata, West Bengal India (e-mail: mitanasipuri@gmail.com)]","institution_ids":["https://openalex.org/I170979836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021916927","display_name":"Dariusz Plewczy\u0144ski","orcid":"https://orcid.org/0000-0002-3840-7610"},"institutions":[{"id":"https://openalex.org/I108403487","display_name":"Warsaw University of Technology","ror":"https://ror.org/00y0xnp53","country_code":"PL","type":"education","lineage":["https://openalex.org/I108403487"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Dariusz Plewczynski","raw_affiliation_strings":["Centre of New Technologies, University of Warsaw, Warsaw, Poland","Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland","Centre of New Technologies, University of Warsaw, Warsaw, Poland; Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland"],"raw_orcid":"https://orcid.org/0000-0002-3840-7610","affiliations":[{"raw_affiliation_string":"Centre of New Technologies, University of Warsaw, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland","institution_ids":["https://openalex.org/I108403487"]},{"raw_affiliation_string":"Centre of New Technologies, University of Warsaw, Warsaw, Poland; Faculty of Mathematics and Information Science, Warsaw University of Technology, Warsaw, Poland","institution_ids":["https://openalex.org/I108403487","https://openalex.org/I4654613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043105133","display_name":"Subhadip Basu","orcid":"https://orcid.org/0000-0003-1780-0461"},"institutions":[{"id":"https://openalex.org/I170979836","display_name":"Jadavpur University","ror":"https://ror.org/02af4h012","country_code":"IN","type":"education","lineage":["https://openalex.org/I170979836"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Subhadip Basu","raw_affiliation_strings":["Department of Computer Science and Engineering, Jadavpur University, Kolkata, West Bengal, India","[CSE, Jadavpur University, 30167 Kolkata, West Bengal India (e-mail: Subhadip.Basu@JadavpurUniversity.in)]"],"raw_orcid":"https://orcid.org/0000-0003-1780-0461","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Jadavpur University, Kolkata, West Bengal, India","institution_ids":["https://openalex.org/I170979836"]},{"raw_affiliation_string":"[CSE, Jadavpur University, 30167 Kolkata, West Bengal India (e-mail: Subhadip.Basu@JadavpurUniversity.in)]","institution_ids":["https://openalex.org/I170979836"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2983,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.52161336,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"19","issue":"1","first_page":"531","last_page":"542"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7319846153259277},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7266766428947449},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5901237726211548},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5704379081726074},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5698685646057129},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.5433732271194458},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5345845222473145},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5123306512832642},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5108811259269714},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4708252251148224},{"id":"https://openalex.org/keywords/cross-validation","display_name":"Cross-validation","score":0.4703757166862488},{"id":"https://openalex.org/keywords/test-set","display_name":"Test set","score":0.4279007017612457},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11370348930358887}],"concepts":[{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7319846153259277},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7266766428947449},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5901237726211548},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5704379081726074},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5698685646057129},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.5433732271194458},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5345845222473145},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5123306512832642},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5108811259269714},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4708252251148224},{"id":"https://openalex.org/C27181475","wikidata":"https://www.wikidata.org/wiki/Q541014","display_name":"Cross-validation","level":2,"score":0.4703757166862488},{"id":"https://openalex.org/C169903167","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Test set","level":2,"score":0.4279007017612457},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11370348930358887},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2020.3004970","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.3004970","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043","2998-4165"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32750875","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32750875","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G1446169879","display_name":null,"funder_award_id":"#2014/15/B/ST6/05082","funder_id":"https://openalex.org/F4320322511","funder_display_name":"Narodowe Centrum Nauki"}],"funders":[{"id":"https://openalex.org/F4320322511","display_name":"Narodowe Centrum Nauki","ror":"https://ror.org/03ha2q922"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W1544009106","https://openalex.org/W1975449945","https://openalex.org/W1982267716","https://openalex.org/W2008840001","https://openalex.org/W2009106746","https://openalex.org/W2020541351","https://openalex.org/W2023531407","https://openalex.org/W2029588446","https://openalex.org/W2030811942","https://openalex.org/W2037036397","https://openalex.org/W2038122249","https://openalex.org/W2044523575","https://openalex.org/W2055431298","https://openalex.org/W2056124433","https://openalex.org/W2057545775","https://openalex.org/W2067375208","https://openalex.org/W2084619201","https://openalex.org/W2087612189","https://openalex.org/W2095867585","https://openalex.org/W2099862356","https://openalex.org/W2101220662","https://openalex.org/W2111805188","https://openalex.org/W2119359534","https://openalex.org/W2120770540","https://openalex.org/W2122863289","https://openalex.org/W2123500593","https://openalex.org/W2130687290","https://openalex.org/W2131562240","https://openalex.org/W2133654213","https://openalex.org/W2134197776","https://openalex.org/W2137786672","https://openalex.org/W2150452800","https://openalex.org/W2152705149","https://openalex.org/W2155723007","https://openalex.org/W2156125289","https://openalex.org/W2161922860","https://openalex.org/W2166468869","https://openalex.org/W2167821759","https://openalex.org/W2170525533","https://openalex.org/W2224056471","https://openalex.org/W2337686908","https://openalex.org/W2472351724","https://openalex.org/W2524367868","https://openalex.org/W2618265628","https://openalex.org/W2618529956","https://openalex.org/W2757598598","https://openalex.org/W2765553901","https://openalex.org/W2805806886","https://openalex.org/W2885583144","https://openalex.org/W2890911678","https://openalex.org/W2907485791","https://openalex.org/W2911844753","https://openalex.org/W2914020633","https://openalex.org/W2915536738","https://openalex.org/W2948793799","https://openalex.org/W2986210726","https://openalex.org/W4237572013","https://openalex.org/W4255855797","https://openalex.org/W6752627451"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W2745001401","https://openalex.org/W2100523380","https://openalex.org/W2141738404","https://openalex.org/W1907816360","https://openalex.org/W2019678805","https://openalex.org/W2134888474","https://openalex.org/W2080355854","https://openalex.org/W2388825802","https://openalex.org/W4206358301"],"abstract_inverted_index":{"Over":[0],"the":[1,9,70,104,119,135,139,165,186],"years,":[2],"several":[3],"methods":[4,27],"have":[5],"been":[6,67],"proposed":[7,46,100],"for":[8,96,147,152,156,174],"computational":[10],"PPI":[11,50,130,148],"prediction":[12,51,153],"with":[13,30,92,116,178],"different":[14],"performance":[15,22],"evaluation":[16,64,71,101],"strategies.":[17],"While":[18],"attempting":[19],"to":[20],"benchmark":[21],"scores,":[23],"most":[24],"of":[25,36,112,118,154],"these":[26,42],"often":[28],"suffer":[29],"ill-treated":[31],"cross-validation":[32],"strategies,":[33],"adhoc":[34],"selection":[35],"positive/negative":[37],"samples":[38],"etc.":[39],"To":[40],"address":[41],"issues,":[43],"in":[44,108,122,171],"our":[45],"multi-level":[47],"feature":[48],"based":[49,88],"approach":[52],"(JUPPI),":[53],"using":[54,80],"sequence,":[55],"domain":[56,124,173],"and":[57,83,125,164],"GO":[58],"information":[59],"as":[60],"features,":[61],"a":[62,86],"refined":[63],"strategy":[65,91,102],"has":[66],"introduced.":[68],"During":[69],"process,":[72],"we":[73],"first":[74],"extract":[75],"high":[76],"quality":[77],"negative":[78],"data":[79],"three-stage":[81],"filtering,":[82],"then":[84],"introduce":[85],"pair-input":[87],"cross":[89],"validation":[90],"three":[93],"difficulty":[94],"levels":[95],"test-set":[97],"predictions.":[98],"Our":[99],"reduces":[103],"component-level":[105],"overlapping":[106],"issue":[107],"test":[109],"sets.":[110],"Performance":[111],"JUPPI":[113,137,162],"is":[114],"compared":[115],"those":[117],"state-of-the-art":[120,140],"approaches":[121],"this":[123],"tested":[126],"on":[127,185],"six":[128],"independent":[129],"datasets.":[131],"In":[132],"almost":[133],"all":[134],"datasets,":[136],"outperforms":[138],"not":[141],"only":[142],"at":[143,191],"human":[144,159],"proteome":[145],"level":[146],"prediction,":[149],"but":[150],"also":[151],"interactors":[155],"intrinsic":[157],"disordered":[158],"proteins.":[160],"https://figshare.com/projects/JUPPI_A_Multi-level_Feature_Based_Method_for_PPI_Prediction_and_a_Refined_Strategy_for_Performance_Assessment/81656":[161],"tool":[163],"developed":[166],"datasets":[167],"(JUPPId)":[168],"are":[169],"available":[170],"public":[172],"academic":[175],"use":[176],"along":[177],"supplementary":[179],"materials,":[180],"which":[181],"can":[182],"be":[183],"found":[184],"Computer":[187],"Society":[188],"Digital":[189],"Library":[190],"http://doi.ieeecomputersociety.org/10.1109/TCBB.2020.3004970.":[192]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2020-07-02T00:00:00"}
