{"id":"https://openalex.org/W3036664406","doi":"https://doi.org/10.1109/tcbb.2020.3003830","title":"GuiltyTargets: Prioritization of Novel Therapeutic Targets With Network Representation Learning","display_name":"GuiltyTargets: Prioritization of Novel Therapeutic Targets With Network Representation Learning","publication_year":2020,"publication_date":"2020-06-19","ids":{"openalex":"https://openalex.org/W3036664406","doi":"https://doi.org/10.1109/tcbb.2020.3003830","mag":"3036664406","pmid":"https://pubmed.ncbi.nlm.nih.gov/32750869"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2020.3003830","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.3003830","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/9702518/09121705.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ieeexplore.ieee.org/ielx7/8857/9702518/09121705.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Ozlem Muslu","orcid":"https://orcid.org/0000-0003-0408-6190"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ozlem Muslu","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-0408-6190","affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Charles Tapley Hoyt","orcid":"https://orcid.org/0000-0003-4423-4370"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Charles Tapley Hoyt","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany","Business Area Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany"],"raw_orcid":"https://orcid.org/0000-0003-4423-4370","affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Business Area Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Mauricio Lacerda","orcid":"https://orcid.org/0000-0002-1770-3007"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mauricio Lacerda","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany"],"raw_orcid":"https://orcid.org/0000-0002-1770-3007","affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Martin Hofmann-Apitius","orcid":"https://orcid.org/0000-0001-9012-6720"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Hofmann-Apitius","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany","Business Area Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany"],"raw_orcid":"https://orcid.org/0000-0001-9012-6720","affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Business Area Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven, Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"last","author":{"id":null,"display_name":"Holger Frohlich","orcid":"https://orcid.org/0000-0002-5328-1243"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Holger Frohlich","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-5328-1243","affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.5964,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.6339986,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"19","issue":"1","first_page":"491","last_page":"500"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.891700029373169,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.891700029373169,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.05420000106096268,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.009600000455975533,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5942000150680542},{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.5856999754905701},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.5277000069618225},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.48510000109672546},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4115000069141388},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.3869999945163727},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.38679999113082886},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.3630000054836273}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7472000122070312},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.710099995136261},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6309999823570251},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5942000150680542},{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.5856999754905701},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.5277000069618225},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.48510000109672546},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4115000069141388},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.3869999945163727},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.38679999113082886},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.3630000054836273},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.3172999918460846},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.3091999888420105},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.30820000171661377},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.302700012922287},{"id":"https://openalex.org/C28006648","wikidata":"https://www.wikidata.org/wiki/Q6934509","display_name":"Multi-task learning","level":3,"score":0.29660001397132874},{"id":"https://openalex.org/C136389625","wikidata":"https://www.wikidata.org/wiki/Q334384","display_name":"Supervised learning","level":3,"score":0.2924000024795532},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.27410000562667847},{"id":"https://openalex.org/C94124525","wikidata":"https://www.wikidata.org/wiki/Q912550","display_name":"Categorization","level":2,"score":0.2531000077724457}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1109/tcbb.2020.3003830","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.3003830","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/9702518/09121705.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32750869","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32750869","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null},{"id":"pmh:oai:fraunhofer.de:N-596945","is_oa":false,"landing_page_url":"http://publica.fraunhofer.de/documents/N-596945.html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400801","display_name":"Publikationsdatenbank der Fraunhofer-Gesellschaft (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fraunhofer SCAI","raw_type":"article"},{"id":"pmh:oai:publica.fraunhofer.de:publica/263424","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/263424","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1109/tcbb.2020.3003830","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.3003830","pdf_url":"https://ieeexplore.ieee.org/ielx7/8857/9702518/09121705.pdf","source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1052080286","display_name":null,"funder_award_id":"211002","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G1576660248","display_name":null,"funder_award_id":"U24 NS072026","funder_id":"https://openalex.org/F4320306136","funder_display_name":"Michael J. Fox Foundation for Parkinson's Research"},{"id":"https://openalex.org/G1601244738","display_name":null,"funder_award_id":"R01 AG032990","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G1606131442","display_name":null,"funder_award_id":"P30 AG19610","funder_id":"https://openalex.org/F4320309677","funder_display_name":"Arizona Department of Health Services"},{"id":"https://openalex.org/G1999460359","display_name":null,"funder_award_id":"05-901","funder_id":"https://openalex.org/F4320306143","funder_display_name":"Mayo Clinic"},{"id":"https://openalex.org/G2037330952","display_name":null,"funder_award_id":"R01 NS080820","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G2079542735","display_name":null,"funder_award_id":"P50 AG016574","funder_id":"https://openalex.org/F4320309677","funder_display_name":"Arizona Department of Health Services"},{"id":"https://openalex.org/G2161113364","display_name":null,"funder_award_id":"P30 AG19610","funder_id":"https://openalex.org/F4320332140","funder_display_name":"Arizona Biomedical Research Commission"},{"id":"https://openalex.org/G2345704987","display_name":null,"funder_award_id":"R01 AG003949","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G2378970294","display_name":null,"funder_award_id":"U24 NS072026","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G2387188009","display_name":null,"funder_award_id":"U24 NS072026","funder_id":"https://openalex.org/F4320306143","funder_display_name":"Mayo Clinic"},{"id":"https://openalex.org/G250893170","display_name":null,"funder_award_id":"05-901","funder_id":"https://openalex.org/F4320306136","funder_display_name":"Michael J. Fox Foundation for Parkinson's Research"},{"id":"https://openalex.org/G2623777770","display_name":null,"funder_award_id":"P50 AG016574","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G2642611343","display_name":null,"funder_award_id":"AG046139","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G2736512263","display_name":null,"funder_award_id":"R01 AG017216","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G2742243682","display_name":null,"funder_award_id":"R01 AG018023","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G2898431357","display_name":null,"funder_award_id":"211002","funder_id":"https://openalex.org/F4320306136","funder_display_name":"Michael J. Fox Foundation for Parkinson's Research"},{"id":"https://openalex.org/G2908616768","display_name":null,"funder_award_id":"U01 AG046139","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G3036763132","display_name":null,"funder_award_id":"AG016574","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G3251040009","display_name":null,"funder_award_id":"U24 NS072026","funder_id":"https://openalex.org/F4320309677","funder_display_name":"Arizona Department of Health Services"},{"id":"https://openalex.org/G3255618601","display_name":null,"funder_award_id":"U01 AG046139","funder_id":"https://openalex.org/F4320306143","funder_display_name":"Mayo Clinic"},{"id":"https://openalex.org/G3360496542","display_name":null,"funder_award_id":"U01 AG032984","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G3521153818","display_name":null,"funder_award_id":"05-901","funder_id":"https://openalex.org/F4320309677","funder_display_name":"Arizona Department of Health Services"},{"id":"https://openalex.org/G3608827835","display_name":null,"funder_award_id":"U01 AG006576","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G3743240706","display_name":null,"funder_award_id":"R01 AG017917","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G3772590983","display_name":null,"funder_award_id":"U24 NS072026","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G3959875274","display_name":null,"funder_award_id":"R01AG17917","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G4091101013","display_name":null,"funder_award_id":"U01 AG006786","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G4193400840","display_name":null,"funder_award_id":"NS072026","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G4314454130","display_name":null,"funder_award_id":"05-901","funder_id":"https://openalex.org/F4320332140","funder_display_name":"Arizona Biomedical Research Commission"},{"id":"https://openalex.org/G4369927624","display_name":null,"funder_award_id":"P30 AG19610","funder_id":"https://openalex.org/F4320306143","funder_display_name":"Mayo Clinic"},{"id":"https://openalex.org/G4498631077","display_name":null,"funder_award_id":"P50 AG016574","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G4741916379","display_name":null,"funder_award_id":"P50 AG016574","funder_id":"https://openalex.org/F4320306143","funder_display_name":"Mayo Clinic"},{"id":"https://openalex.org/G4786804247","display_name":null,"funder_award_id":"contracts 4001, 0011, 05-901 and 1001","funder_id":"https://openalex.org/F4320332140","funder_display_name":"Arizona Biomedical Research Commission"},{"id":"https://openalex.org/G4791902628","display_name":null,"funder_award_id":"211002","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G5018925220","display_name":null,"funder_award_id":"P30AG10161","funder_id":"https://openalex.org/F4320308102","funder_display_name":"Illinois Department of Public Health"},{"id":"https://openalex.org/G5030236256","display_name":null,"funder_award_id":"NS080820","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G5277034656","display_name":null,"funder_award_id":"R01 AG015819","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G541333419","display_name":null,"funder_award_id":"R01AG15819","funder_id":"https://openalex.org/F4320308102","funder_display_name":"Illinois Department of Public Health"},{"id":"https://openalex.org/G5484535055","display_name":null,"funder_award_id":"AG016574","funder_id":"https://openalex.org/F4320309464","funder_display_name":"Mayo Foundation for Medical Education and Research"},{"id":"https://openalex.org/G5713958695","display_name":null,"funder_award_id":"R01AG17917","funder_id":"https://openalex.org/F4320308102","funder_display_name":"Illinois Department of Public Health"},{"id":"https://openalex.org/G6030318873","display_name":null,"funder_award_id":"211002","funder_id":"https://openalex.org/F4320309677","funder_display_name":"Arizona Department of Health Services"},{"id":"https://openalex.org/G6166194768","display_name":null,"funder_award_id":"R01AG30146","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G6319212866","display_name":null,"funder_award_id":"U01 AG046152","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G6328368104","display_name":null,"funder_award_id":"R01 AG025711","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G6498701745","display_name":null,"funder_award_id":"R01 AG030146","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G6530347775","display_name":null,"funder_award_id":"AG025711","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G6635027732","display_name":null,"funder_award_id":"R01AG36836","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G6814118465","display_name":null,"funder_award_id":"R01 AG032990","funder_id":"https://openalex.org/F4320306143","funder_display_name":"Mayo Clinic"},{"id":"https://openalex.org/G6875889451","display_name":null,"funder_award_id":"U01 AG006786","funder_id":"https://openalex.org/F4320306143","funder_display_name":"Mayo Clinic"},{"id":"https://openalex.org/G6903560910","display_name":null,"funder_award_id":"R01AG15819","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G7161884846","display_name":null,"funder_award_id":"05-901","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G7224231729","display_name":null,"funder_award_id":"P30 AG010161","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G7479973302","display_name":null,"funder_award_id":"R01AG30146","funder_id":"https://openalex.org/F4320308102","funder_display_name":"Illinois Department of Public Health"},{"id":"https://openalex.org/G7601837854","display_name":null,"funder_award_id":"U01AG46152","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G7747731141","display_name":null,"funder_award_id":"05-901","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G7788227861","display_name":null,"funder_award_id":"U24 NS072026 National Brain","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G7788936411","display_name":null,"funder_award_id":"AG19610","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G7836467104","display_name":null,"funder_award_id":"U24 NS072026","funder_id":"https://openalex.org/F4320332140","funder_display_name":"Arizona Biomedical Research Commission"},{"id":"https://openalex.org/G7887587830","display_name":null,"funder_award_id":"P30 AG19610","funder_id":"https://openalex.org/F4320306136","funder_display_name":"Michael J. Fox Foundation for Parkinson's Research"},{"id":"https://openalex.org/G7922594232","display_name":null,"funder_award_id":"P30 AG19610","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G7930350901","display_name":null,"funder_award_id":"R01 AG036836","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G8044459106","display_name":null,"funder_award_id":"P30AG10161","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G8108503723","display_name":null,"funder_award_id":"AG006786","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G8289575266","display_name":null,"funder_award_id":"AG017216","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G8346902290","display_name":null,"funder_award_id":"R01 AG032990","funder_id":"https://openalex.org/F4320309677","funder_display_name":"Arizona Department of Health Services"},{"id":"https://openalex.org/G8394098095","display_name":null,"funder_award_id":"4001, 0011, 05-901 and 1001","funder_id":"https://openalex.org/F4320332140","funder_display_name":"Arizona Biomedical Research Commission"},{"id":"https://openalex.org/G8508790466","display_name":null,"funder_award_id":"P30 AG19610","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G8629123209","display_name":null,"funder_award_id":"AG003949","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G8762639507","display_name":null,"funder_award_id":"R01 NS080820","funder_id":"https://openalex.org/F4320306143","funder_display_name":"Mayo Clinic"},{"id":"https://openalex.org/G961669115","display_name":null,"funder_award_id":"211002","funder_id":"https://openalex.org/F4320332140","funder_display_name":"Arizona Biomedical Research Commission"},{"id":"https://openalex.org/G989695202","display_name":null,"funder_award_id":"211002","funder_id":"https://openalex.org/F4320306143","funder_display_name":"Mayo Clinic"}],"funders":[{"id":"https://openalex.org/F4320306136","display_name":"Michael J. Fox Foundation for Parkinson's Research","ror":"https://ror.org/03arq3225"},{"id":"https://openalex.org/F4320306143","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03"},{"id":"https://openalex.org/F4320308102","display_name":"Illinois Department of Public Health","ror":"https://ror.org/027bk5v43"},{"id":"https://openalex.org/F4320309464","display_name":"Mayo Foundation for Medical Education and Research","ror":"https://ror.org/02qp3tb03"},{"id":"https://openalex.org/F4320309677","display_name":"Arizona Department of Health Services","ror":"https://ror.org/01smpj292"},{"id":"https://openalex.org/F4320310601","display_name":"CurePSP","ror":"https://ror.org/00qfsn733"},{"id":"https://openalex.org/F4320310664","display_name":"Rush University","ror":"https://ror.org/01k9xac83"},{"id":"https://openalex.org/F4320317673","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21"},{"id":"https://openalex.org/F4320332140","display_name":"Arizona Biomedical Research Commission","ror":"https://ror.org/01smpj292"},{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3036664406.pdf","grobid_xml":"https://content.openalex.org/works/W3036664406.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W1500036797","https://openalex.org/W1605885548","https://openalex.org/W1967286178","https://openalex.org/W1973094248","https://openalex.org/W1978839489","https://openalex.org/W1980177098","https://openalex.org/W1984389071","https://openalex.org/W2002330353","https://openalex.org/W2006185455","https://openalex.org/W2010022125","https://openalex.org/W2020541351","https://openalex.org/W2037935996","https://openalex.org/W2065540447","https://openalex.org/W2070053976","https://openalex.org/W2088545291","https://openalex.org/W2100239923","https://openalex.org/W2110065044","https://openalex.org/W2113951828","https://openalex.org/W2118258530","https://openalex.org/W2118953105","https://openalex.org/W2120600363","https://openalex.org/W2123958887","https://openalex.org/W2124166542","https://openalex.org/W2134510195","https://openalex.org/W2140239055","https://openalex.org/W2146512944","https://openalex.org/W2159132187","https://openalex.org/W2161818848","https://openalex.org/W2266524792","https://openalex.org/W2285480412","https://openalex.org/W2410375143","https://openalex.org/W2483054670","https://openalex.org/W2507587187","https://openalex.org/W2519842263","https://openalex.org/W2531904292","https://openalex.org/W2534390616","https://openalex.org/W2537623931","https://openalex.org/W2557530941","https://openalex.org/W2558217333","https://openalex.org/W2592839484","https://openalex.org/W2610795807","https://openalex.org/W2744720080","https://openalex.org/W2753633147","https://openalex.org/W2772340642","https://openalex.org/W2787229753","https://openalex.org/W2801306368","https://openalex.org/W2804633924","https://openalex.org/W2808373515","https://openalex.org/W2809893308","https://openalex.org/W2883033187","https://openalex.org/W2889790826","https://openalex.org/W2892573831","https://openalex.org/W2950753203","https://openalex.org/W4249273120","https://openalex.org/W6636510571","https://openalex.org/W6675354045","https://openalex.org/W6692670341","https://openalex.org/W6714488965","https://openalex.org/W6751535803","https://openalex.org/W6755496507","https://openalex.org/W6763255599"],"related_works":[],"abstract_inverted_index":{"The":[0,48,215],"majority":[1],"of":[2,10,19,42,50,72,90,121,169,178,198,286,298],"clinical":[3],"trials":[4],"fail":[5],"due":[6],"to":[7,26,54,64,171,247,276],"low":[8],"efficacy":[9],"investigated":[11],"drugs,":[12],"often":[13],"resulting":[14],"from":[15,118],"a":[16,43,67,77,91,128,176,272,313],"poor":[17],"choice":[18],"target":[20,28,79,161,197,210,269,292],"protein.":[21],"Existing":[22],"computational":[23,301],"approaches":[24,146],"aim":[25],"support":[27],"selection":[29],"either":[30],"via":[31],"genetic":[32],"evidence":[33],"or":[34],"by":[35],"putting":[36],"potential":[37,208,285],"targets":[38,187],"into":[39],"the":[40,189,196,207,233,250,254,263,284,295,317],"context":[41],"disease":[44,165,173],"specific":[45],"network":[46,57,87,95,239,288,307],"reconstruction.":[47],"purpose":[49],"this":[51,261],"work":[52,282],"was":[53],"investigate":[55],"whether":[56],"representation":[58,88,240,289,308],"learning":[59,69,89,107,241,267,290,309],"techniques":[60,242,310],"could":[61,311],"be":[62,230],"used":[63,226],"allow":[65],"for":[66,108,160,203,209,227,268,291],"machine":[68,106],"based":[70],"prioritization":[71,80,270],"putative":[73],"targets.":[74],"We":[75,111],"propose":[76],"novel":[78],"approach,":[81],"GuiltyTargets,":[82],"which":[83],"relies":[84],"on":[85,115,149,221],"attributed":[86,287,306],"genome-wide":[92],"protein-protein":[93],"interaction":[94],"annotated":[96],"with":[97,212,265],"disease-specific":[98],"differential":[99],"gene":[100],"expression":[101],"and":[102,135,223],"uses":[103],"positive-unlabeled":[104,266],"(PU)":[105],"candidate":[109],"ranking.":[110],"evaluated":[112],"our":[113,213],"approach":[114,246],"12":[116],"datasets":[117],"six":[119],"diseases":[120],"different":[122,258],"type":[123],"(cancer,":[124],"metabolic,":[125],"neurodegenerative)":[126],"within":[127],"10":[129],"times":[130],"repeated":[131],"5-fold":[132],"stratified":[133],"cross-validation":[134],"achieved":[136],"AUROC":[137],"values":[138],"between":[139],"0.92":[140],"-":[141],"0.97,":[142],"significantly":[143],"outperforming":[144],"previous":[145],"that":[147,157,182,305],"relied":[148],"manually":[150],"engineered":[151],"topological":[152],"features.":[153],"Moreover,":[154],"we":[155,303],"showed":[156],"GuiltyTargets":[158,170,216],"allows":[159],"repositioning":[162,211],"across":[163],"related":[164],"areas.":[166],"An":[167],"application":[168],"Alzheimer's":[172],"resulted":[174],"in":[175,188,257,300,316],"number":[177],"highly":[179],"ranked":[180],"candidates":[181],"are":[183],"currently":[184],"discussed":[185],"as":[186],"literature.":[190],"Interestingly,":[191],"one":[192],"(COMT)":[193],"is":[194,219],"also":[195],"an":[199,244],"approved":[200],"drug":[201],"(Tolcapone)":[202],"Parkinson's":[204],"disease,":[205],"highlighting":[206],"method.":[214],"Python":[217],"package":[218],"available":[220],"PyPI":[222],"all":[224],"code":[225],"analysis":[228],"can":[229],"found":[231],"under":[232],"MIT":[234],"License":[235],"at":[236],"https://github.com/GuiltyTargets.":[237],"Attributed":[238],"provide":[243],"interesting":[245],"effectively":[248],"leverage":[249],"existing":[251],"knowledge":[252],"about":[253],"molecular":[255],"mechanisms":[256],"diseases.":[259],"In":[260],"work,":[262],"combination":[264],"demonstrated":[271],"clear":[273],"superiority":[274],"compared":[275],"classical":[277],"feature":[278],"engineering":[279],"approaches.":[280],"Our":[281],"highlights":[283],"prioritization.":[293],"Given":[294],"overarching":[296],"relevance":[297],"networks":[299],"biology":[302],"believe":[304],"have":[312],"broader":[314],"impact":[315],"future.":[318]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-25T15:57:00.446498","created_date":"2020-06-25T00:00:00"}
