{"id":"https://openalex.org/W3034095044","doi":"https://doi.org/10.1109/tcbb.2020.2999399","title":"AMP<sub>0</sub>: Species-Specific Prediction of Anti-microbial Peptides Using Zero and Few Shot Learning","display_name":"AMP<sub>0</sub>: Species-Specific Prediction of Anti-microbial Peptides Using Zero and Few Shot Learning","publication_year":2020,"publication_date":"2020-06-02","ids":{"openalex":"https://openalex.org/W3034095044","doi":"https://doi.org/10.1109/tcbb.2020.2999399","mag":"3034095044","pmid":"https://pubmed.ncbi.nlm.nih.gov/32750857"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2020.2999399","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.2999399","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066299009","display_name":"Sadaf Gull","orcid":null},"institutions":[{"id":"https://openalex.org/I134276161","display_name":"Pakistan Institute of Engineering and Applied Sciences","ror":"https://ror.org/04d4mbk19","country_code":"PK","type":"education","lineage":["https://openalex.org/I134276161"]}],"countries":["PK"],"is_corresponding":true,"raw_author_name":"Sadaf Gull","raw_affiliation_strings":["PIEAS Biomedical Informatics Lab, Department of Computer and Information Sciences, Pakistan Institute of Engineering and Applied Sciences, Islamabad, Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"PIEAS Biomedical Informatics Lab, Department of Computer and Information Sciences, Pakistan Institute of Engineering and Applied Sciences, Islamabad, Pakistan","institution_ids":["https://openalex.org/I134276161"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086173090","display_name":"Fayyaz Minhas","orcid":"https://orcid.org/0000-0001-9129-1189"},"institutions":[{"id":"https://openalex.org/I134276161","display_name":"Pakistan Institute of Engineering and Applied Sciences","ror":"https://ror.org/04d4mbk19","country_code":"PK","type":"education","lineage":["https://openalex.org/I134276161"]},{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB","PK"],"is_corresponding":false,"raw_author_name":"Fayyaz Minhas","raw_affiliation_strings":["Department of Computer Science, University of Warwick, Coventry, U.K","PIEAS Biomedical Informatics Lab, Islamabad, Pakistan"],"raw_orcid":"https://orcid.org/0000-0001-9129-1189","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Warwick, Coventry, U.K","institution_ids":["https://openalex.org/I39555362"]},{"raw_affiliation_string":"PIEAS Biomedical Informatics Lab, Islamabad, Pakistan","institution_ids":["https://openalex.org/I134276161"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5066299009"],"corresponding_institution_ids":["https://openalex.org/I134276161"],"apc_list":null,"apc_paid":null,"fwci":0.9169,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.7301496,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"19","issue":"1","first_page":"275","last_page":"283"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antimicrobial","display_name":"Antimicrobial","score":0.788025975227356},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6705336570739746},{"id":"https://openalex.org/keywords/antimicrobial-peptides","display_name":"Antimicrobial peptides","score":0.6330611705780029},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.5669424533843994},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5206693410873413},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5183290243148804},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.335258811712265},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3217596411705017},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.31881603598594666},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21694308519363403},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.21550080180168152},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.21364876627922058}],"concepts":[{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.788025975227356},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6705336570739746},{"id":"https://openalex.org/C540938839","wikidata":"https://www.wikidata.org/wiki/Q1201508","display_name":"Antimicrobial peptides","level":3,"score":0.6330611705780029},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.5669424533843994},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5206693410873413},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5183290243148804},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.335258811712265},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3217596411705017},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.31881603598594666},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21694308519363403},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.21550080180168152},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.21364876627922058}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2020.2999399","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.2999399","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32750857","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32750857","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6100000143051147}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322799","display_name":"Higher Education Commission, Pakistan","ror":"https://ror.org/038y3sz68"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":81,"referenced_works":["https://openalex.org/W93016980","https://openalex.org/W652269744","https://openalex.org/W1821527815","https://openalex.org/W1969080446","https://openalex.org/W1976526581","https://openalex.org/W1979298603","https://openalex.org/W1993267991","https://openalex.org/W2020816856","https://openalex.org/W2023275798","https://openalex.org/W2044341938","https://openalex.org/W2044719651","https://openalex.org/W2048721314","https://openalex.org/W2082521980","https://openalex.org/W2083835441","https://openalex.org/W2097606916","https://openalex.org/W2101968807","https://openalex.org/W2103743593","https://openalex.org/W2105570105","https://openalex.org/W2113075000","https://openalex.org/W2115733720","https://openalex.org/W2117486996","https://openalex.org/W2119821739","https://openalex.org/W2122111042","https://openalex.org/W2127771490","https://openalex.org/W2129075788","https://openalex.org/W2133887562","https://openalex.org/W2140170361","https://openalex.org/W2140211206","https://openalex.org/W2141350700","https://openalex.org/W2141524685","https://openalex.org/W2160979370","https://openalex.org/W2163316049","https://openalex.org/W2171033594","https://openalex.org/W2189116376","https://openalex.org/W2222575139","https://openalex.org/W2295598076","https://openalex.org/W2296592747","https://openalex.org/W2418882863","https://openalex.org/W2511835277","https://openalex.org/W2588463038","https://openalex.org/W2589065420","https://openalex.org/W2611632661","https://openalex.org/W2615066396","https://openalex.org/W2753160622","https://openalex.org/W2774174188","https://openalex.org/W2783167480","https://openalex.org/W2791375079","https://openalex.org/W2792631429","https://openalex.org/W2798836702","https://openalex.org/W2801924301","https://openalex.org/W2803620206","https://openalex.org/W2807001312","https://openalex.org/W2896127999","https://openalex.org/W2897109701","https://openalex.org/W2898250100","https://openalex.org/W2898262866","https://openalex.org/W2917874934","https://openalex.org/W2936088767","https://openalex.org/W2943975068","https://openalex.org/W2945297971","https://openalex.org/W2951756882","https://openalex.org/W2952218450","https://openalex.org/W2953146702","https://openalex.org/W2962876782","https://openalex.org/W2964086552","https://openalex.org/W2964105864","https://openalex.org/W2979348084","https://openalex.org/W3009864380","https://openalex.org/W3035374961","https://openalex.org/W4251386234","https://openalex.org/W4253233875","https://openalex.org/W4293412117","https://openalex.org/W4301971222","https://openalex.org/W6601146891","https://openalex.org/W6603820874","https://openalex.org/W6678360021","https://openalex.org/W6682222085","https://openalex.org/W6686723365","https://openalex.org/W6735236233","https://openalex.org/W6743661861","https://openalex.org/W6746260573"],"related_works":["https://openalex.org/W2358368915","https://openalex.org/W2380741856","https://openalex.org/W1973192249","https://openalex.org/W2354039930","https://openalex.org/W4211241221","https://openalex.org/W2044458410","https://openalex.org/W2388831772","https://openalex.org/W3087020980","https://openalex.org/W2511368942","https://openalex.org/W2107525095"],"abstract_inverted_index":{"Evolution":[0],"of":[1,7,15,34,52,67,130,142,187],"drug-resistant":[2],"microbial":[3,100,144],"species":[4,145],"is":[5,38,85,157,195],"one":[6],"the":[8,32,61,94,128,139,154],"major":[9],"challenges":[10],"to":[11,24,27,58,91,114,146,166],"global":[12],"health.":[13],"Development":[14],"new":[16],"antimicrobial":[17,21,36,54,69,118,162,176],"treatments":[18],"such":[19],"as":[20],"peptides":[22,37,177],"needs":[23],"be":[25,47,171],"accelerated":[26],"combat":[28],"this":[29,103],"threat.":[30],"However,":[31],"discovery":[33],"novel":[35,191],"hampered":[39],"by":[40],"low-throughput":[41],"biochemical":[42],"assays.":[43],"Computational":[44],"techniques":[45],"can":[46,78,96,170],"used":[48,107,172],"for":[49,160,173,190],"rapid":[50],"screening":[51,174],"promising":[53],"peptide":[55,70,83,119,132],"candidates":[56],"prior":[57],"testing":[59],"in":[60,74,164,178],"wet":[62],"lab.":[63],"The":[64,124],"vast":[65],"majority":[66],"existing":[68,167],"predictors":[71],"are":[72,89],"<i>non-targeted</i>":[73],"nature,":[75],"i.e.,":[76],"they":[77,88],"predict":[79,92],"whether":[80,93],"a":[81,98,116,131,143,179,184],"given":[82],"sequence":[84,95,129,141],"antimicrobial,":[86],"but":[87],"unable":[90],"target":[97],"particular":[99],"species.":[101,192],"In":[102],"work,":[104],"we":[105],"have":[106],"zero":[108],"and":[109,133,169],"few":[110],"shot":[111],"machine":[112],"learning":[113],"develop":[115],"targeted":[117,148,161,180],"activity":[120],"predictor":[121,126],"called":[122],"AMP<sub>0</sub>.":[123],"proposed":[125,155],"takes":[127],"any":[134],"N/C-termini":[135],"modifications":[136],"together":[137],"with":[138,182],"genomic":[140],"generate":[147],"predictions.":[149],"Cross-validation":[150],"results":[151],"show":[152],"that":[153],"scheme":[156],"particularly":[158],"effective":[159],"prediction":[163],"comparison":[165],"approaches":[168],"potential":[175],"manner":[181],"only":[183],"small":[185],"number":[186],"training":[188],"examples":[189],"AMP<sub>0</sub>":[193],"webserver":[194],"available":[196],"at":[197],"<uri>http://ampzero.pythonanywhere.com</uri>.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-31T08:46:17.908082","created_date":"2025-10-10T00:00:00"}
