{"id":"https://openalex.org/W3017223498","doi":"https://doi.org/10.1109/tcbb.2020.2985838","title":"Multi-Neighborhood Learning for Global Alignment in Biological Networks","display_name":"Multi-Neighborhood Learning for Global Alignment in Biological Networks","publication_year":2020,"publication_date":"2020-04-14","ids":{"openalex":"https://openalex.org/W3017223498","doi":"https://doi.org/10.1109/tcbb.2020.2985838","mag":"3017223498","pmid":"https://pubmed.ncbi.nlm.nih.gov/32305933"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2020.2985838","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.2985838","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103127486","display_name":"Lijia Ma","orcid":"https://orcid.org/0000-0002-1201-8051"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lijia Ma","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","School of Computer Science and Soft Engineery, Shenzhen University, 47890 Shenzhen, Guangdong China 518060 (e-mail: OMEGAMaLJ@gmail.com)"],"raw_orcid":"https://orcid.org/0000-0002-1201-8051","affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"School of Computer Science and Soft Engineery, Shenzhen University, 47890 Shenzhen, Guangdong China 518060 (e-mail: OMEGAMaLJ@gmail.com)","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100443969","display_name":"Shiqiang Wang","orcid":"https://orcid.org/0000-0003-3006-6767"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shiqiang Wang","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","[Shenzhen University, 47890 Shenzhen, Guangdong China (e-mail: wangshiqiang2018@email.szu.edu.cn)]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"[Shenzhen University, 47890 Shenzhen, Guangdong China (e-mail: wangshiqiang2018@email.szu.edu.cn)]","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066935890","display_name":"Qiuzhen Lin","orcid":"https://orcid.org/0000-0003-2415-0401"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiuzhen Lin","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","College of Computer Sciences and Software Engineering, Shenzhen University, 47890 Shenzhen, Guangdong China 518060 (e-mail: qiuzhlin@szu.edu.cn)"],"raw_orcid":"https://orcid.org/0000-0003-2415-0401","affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"College of Computer Sciences and Software Engineering, Shenzhen University, 47890 Shenzhen, Guangdong China 518060 (e-mail: qiuzhlin@szu.edu.cn)","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100393871","display_name":"Jianqiang Li","orcid":"https://orcid.org/0000-0002-2208-962X"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianqiang Li","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","[College of Computer Science and Software Engineering, Shenzhen University, 47890 Shenzhen, Guangdong China (e-mail: lijq@szu.edu.cn)]"],"raw_orcid":"https://orcid.org/0000-0002-2208-962X","affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"[College of Computer Science and Software Engineering, Shenzhen University, 47890 Shenzhen, Guangdong China (e-mail: lijq@szu.edu.cn)]","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I4210106108","display_name":"Xinjiang Technical Institute of Physics & Chemistry","ror":"https://ror.org/00x44h034","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106108"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhuhong You","raw_affiliation_strings":["Xinjiang Technical Institute of Physics and Chemistry, Chinese Academic of Science, Xinjiang, China"],"raw_orcid":"https://orcid.org/0000-0003-1266-2696","affiliations":[{"raw_affiliation_string":"Xinjiang Technical Institute of Physics and Chemistry, Chinese Academic of Science, Xinjiang, China","institution_ids":["https://openalex.org/I4210106108"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114108152","display_name":"Jiaxiang Huang","orcid":"https://orcid.org/0000-0001-7064-1231"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiaxiang Huang","raw_affiliation_strings":["School of Electronic Engineering, Xidian University, Xi'an, China","[Xidian University, 47905 Xian, Shaanxi China (e-mail: huangjx.gm@gmail.com)]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronic Engineering, Xidian University, Xi'an, China","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"[Xidian University, 47905 Xian, Shaanxi China (e-mail: huangjx.gm@gmail.com)]","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091227928","display_name":"Maoguo Gong","orcid":"https://orcid.org/0000-0002-0415-8556"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Maoguo Gong","raw_affiliation_strings":["School of Electronic Engineering, Xidian University, Xi'an, China","Key Lab of Intelligent Perception and Image Understanding of Ministry of Education of China, Xidian University, Xi'an, Shaanxi China 710071 (e-mail: gong@ieee.org)"],"raw_orcid":"https://orcid.org/0000-0002-0415-8556","affiliations":[{"raw_affiliation_string":"School of Electronic Engineering, Xidian University, Xi'an, China","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"Key Lab of Intelligent Perception and Image Understanding of Ministry of Education of China, Xidian University, Xi'an, Shaanxi China 710071 (e-mail: gong@ieee.org)","institution_ids":["https://openalex.org/I149594827"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.9764,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.73791643,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"18","issue":"6","first_page":"2598","last_page":"2611"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.6781980991363525},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6517642736434937},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5751825571060181},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4891963005065918},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4467144012451172},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3728521466255188},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3608875274658203},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1959436535835266},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.1720210313796997},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14117884635925293},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.12728020548820496}],"concepts":[{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.6781980991363525},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6517642736434937},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5751825571060181},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4891963005065918},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4467144012451172},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3728521466255188},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3608875274658203},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1959436535835266},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.1720210313796997},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14117884635925293},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.12728020548820496},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2020.2985838","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.2985838","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32305933","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32305933","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.6700000166893005,"id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G4238711426","display_name":null,"funder_award_id":"61876110","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4385782370","display_name":null,"funder_award_id":"61803269","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5693537545","display_name":"\u590d\u6742\u73af\u5883\u4e0b\u7a7a\u4e2d/\u5730\u9762\u591a\u5f02\u6784\u673a\u5668\u4eba\u7acb\u4f53\u534f\u540c\u7b56\u7565\u7814\u7a76","funder_award_id":"61572330","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6733505969","display_name":null,"funder_award_id":"U1713212","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6815789538","display_name":null,"funder_award_id":"2019B151502018","funder_id":"https://openalex.org/F4320321921","funder_display_name":"Natural Science Foundation of Guangdong Province"},{"id":"https://openalex.org/G7097245526","display_name":"\u7c7b\u4eba\u4efb\u52a1\u89c4\u5212\u3001\u63a8\u7406\u53ca\u5176\u9a8c\u8bc1\u7cfb\u7edf\u7684\u7814\u7a76\u548c\u5e94\u7528","funder_award_id":"61836005","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7207572663","display_name":"\u79fb\u52a8\u652f\u4ed8\u5b89\u5168\u7406\u8bba\u6a21\u578b\u53ca\u5173\u952e\u6280\u672f\u7814\u7a76","funder_award_id":"61672358","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G928586019","display_name":null,"funder_award_id":"61772393","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321921","display_name":"Natural Science Foundation of Guangdong Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1564354600","https://openalex.org/W1686696692","https://openalex.org/W1992250165","https://openalex.org/W2002189912","https://openalex.org/W2010707723","https://openalex.org/W2011843642","https://openalex.org/W2026595597","https://openalex.org/W2038920443","https://openalex.org/W2041020482","https://openalex.org/W2056124433","https://openalex.org/W2056903220","https://openalex.org/W2062533676","https://openalex.org/W2086254934","https://openalex.org/W2095293504","https://openalex.org/W2118853019","https://openalex.org/W2119151462","https://openalex.org/W2126105956","https://openalex.org/W2127957894","https://openalex.org/W2131298592","https://openalex.org/W2131681506","https://openalex.org/W2136845897","https://openalex.org/W2137648512","https://openalex.org/W2140084895","https://openalex.org/W2142343225","https://openalex.org/W2149037310","https://openalex.org/W2153929049","https://openalex.org/W2155834877","https://openalex.org/W2164928285","https://openalex.org/W2289831356","https://openalex.org/W2320144048","https://openalex.org/W2326369546","https://openalex.org/W2343098366","https://openalex.org/W2409564679","https://openalex.org/W2537484932","https://openalex.org/W2584993989","https://openalex.org/W2587997094","https://openalex.org/W2738984681","https://openalex.org/W2745416959","https://openalex.org/W2801747814","https://openalex.org/W2889969897","https://openalex.org/W2914821591","https://openalex.org/W2964024205","https://openalex.org/W3099768174","https://openalex.org/W4210430020","https://openalex.org/W4236236547","https://openalex.org/W4256632267","https://openalex.org/W6657234764"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W4385510321","https://openalex.org/W15348386","https://openalex.org/W2379232404","https://openalex.org/W2314128295","https://openalex.org/W1509942269","https://openalex.org/W4287026692","https://openalex.org/W2077895977","https://openalex.org/W2609388058"],"abstract_inverted_index":{"The":[0,33],"global":[1],"alignment":[2,12,152],"of":[3,27,54,70,99,111,137,146,159,169],"biological":[4,21,72,107,138],"networks":[5,139],"(GABN)":[6],"aims":[7],"to":[8,42,62,126],"find":[9],"an":[10,97,112],"optimal":[11],"between":[13,67],"proteins":[14,29],"across":[15,140],"species,":[16],"such":[17],"that":[18],"both":[19],"the":[20,24,28,55,68,71,105,128,144,149,157,167,170],"structures":[22,26,73],"and":[23,50,74,108,114,121],"topological":[25,75,109],"are":[30,60],"maximally":[31],"conserved.":[32],"research":[34],"on":[35,45,134,165],"GABN":[36,59,88,95],"has":[37],"attracted":[38],"great":[39],"attention":[40],"due":[41],"its":[43],"applications":[44],"species":[46,142],"evolution,":[47],"orthology":[48],"detection":[49],"genetic":[51],"analyses.":[52],"Most":[53],"existing":[56],"methods":[57],"for":[58,86],"difficult":[61],"obtain":[63],"a":[64,82,100,118,162],"good":[65],"tradeoff":[66],"conservation":[69],"structures.":[76],"In":[77],"this":[78],"paper,":[79],"we":[80],"propose":[81],"multi-neighborhood":[83],"learning":[84,124],"method":[85,164],"solving":[87],"(called":[89],"as":[90,96,161],"CLMNA).":[91],"CLMNA":[92,147,160],"first":[93],"models":[94],"optimization":[98],"weighted":[101],"similarity":[102],"which":[103],"evaluates":[104],"conserved":[106],"similarities":[110],"alignment,":[113],"then":[115],"it":[116],"combines":[117],"first-proximity,":[119],"second-proximity":[120],"individual-aware":[122],"proximity":[123],"algorithm":[125],"solve":[127],"modeled":[129],"problem.":[130],"Finally,":[131],"systematic":[132],"experiments":[133],"10":[135],"pairs":[136],"5":[141],"show":[143],"superiority":[145],"over":[148],"state-of-the-art":[150],"network":[151],"algorithms.":[153,172],"They":[154],"also":[155],"validate":[156],"effectiveness":[158],"refinement":[163],"improving":[166],"performance":[168],"compared":[171]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":3},{"year":2020,"cited_by_count":4}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
