{"id":"https://openalex.org/W3016103461","doi":"https://doi.org/10.1109/tcbb.2020.2985349","title":"Foretelling the Phenotype of a Genomic Sequence","display_name":"Foretelling the Phenotype of a Genomic Sequence","publication_year":2020,"publication_date":"2020-04-07","ids":{"openalex":"https://openalex.org/W3016103461","doi":"https://doi.org/10.1109/tcbb.2020.2985349","mag":"3016103461","pmid":"https://pubmed.ncbi.nlm.nih.gov/32287003"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2020.2985349","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.2985349","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067184138","display_name":"Sambriddhi Mainali","orcid":"https://orcid.org/0000-0003-4705-5714"},"institutions":[{"id":"https://openalex.org/I94658018","display_name":"University of Memphis","ror":"https://ror.org/01cq23130","country_code":"US","type":"education","lineage":["https://openalex.org/I94658018"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sambriddhi Mainali","raw_affiliation_strings":["The University of Memphis, Memphis, TN, USA"],"affiliations":[{"raw_affiliation_string":"The University of Memphis, Memphis, TN, USA","institution_ids":["https://openalex.org/I94658018"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031188564","display_name":"Fredy A. Colorado","orcid":null},"institutions":[{"id":"https://openalex.org/I36243813","display_name":"Universidad Nacional de Colombia","ror":"https://ror.org/059yx9a68","country_code":"CO","type":"education","lineage":["https://openalex.org/I36243813"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Fredy A. Colorado","raw_affiliation_strings":["The National University of Colombia, Bogota, Colombia"],"affiliations":[{"raw_affiliation_string":"The National University of Colombia, Bogota, Colombia","institution_ids":["https://openalex.org/I36243813"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006855445","display_name":"Max Garz\u00f3n","orcid":"https://orcid.org/0000-0001-9552-2255"},"institutions":[{"id":"https://openalex.org/I94658018","display_name":"University of Memphis","ror":"https://ror.org/01cq23130","country_code":"US","type":"education","lineage":["https://openalex.org/I94658018"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Max H. Garzon","raw_affiliation_strings":["The University of Memphis, Memphis, TN, USA"],"affiliations":[{"raw_affiliation_string":"The University of Memphis, Memphis, TN, USA","institution_ids":["https://openalex.org/I94658018"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5067184138"],"corresponding_institution_ids":["https://openalex.org/I94658018"],"apc_list":null,"apc_paid":null,"fwci":1.1234,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.77164796,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"18","issue":"2","first_page":"777","last_page":"783"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11706","display_name":"Forensic Entomology and Diptera Studies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11706","display_name":"Forensic Entomology and Diptera Studies","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12043","display_name":"Insect behavior and control techniques","score":0.9825000166893005,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8401950597763062},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.7732561826705933},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.7617616653442383},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5937850475311279},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.573381245136261},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.5553949475288391},{"id":"https://openalex.org/keywords/phenotypic-trait","display_name":"Phenotypic trait","score":0.5551872253417969},{"id":"https://openalex.org/keywords/entomology","display_name":"Entomology","score":0.46194133162498474},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37943071126937866},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.30365175008773804},{"id":"https://openalex.org/keywords/zoology","display_name":"Zoology","score":0.21733751893043518}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8401950597763062},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.7732561826705933},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.7617616653442383},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5937850475311279},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.573381245136261},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.5553949475288391},{"id":"https://openalex.org/C130073038","wikidata":"https://www.wikidata.org/wiki/Q1211967","display_name":"Phenotypic trait","level":4,"score":0.5551872253417969},{"id":"https://openalex.org/C147135968","wikidata":"https://www.wikidata.org/wiki/Q39286","display_name":"Entomology","level":2,"score":0.46194133162498474},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37943071126937866},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.30365175008773804},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.21733751893043518}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007814","descriptor_name":"Larva","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012843","descriptor_name":"Simuliidae","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":true},{"descriptor_ui":"D012843","descriptor_name":"Simuliidae","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":true},{"descriptor_ui":"D012843","descriptor_name":"Simuliidae","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":true},{"descriptor_ui":"D012843","descriptor_name":"Simuliidae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D012843","descriptor_name":"Simuliidae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D012843","descriptor_name":"Simuliidae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D012843","descriptor_name":"Simuliidae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012843","descriptor_name":"Simuliidae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012843","descriptor_name":"Simuliidae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049750","descriptor_name":"Genome, Insect","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D049750","descriptor_name":"Genome, Insect","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D049750","descriptor_name":"Genome, Insect","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2020.2985349","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.2985349","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32287003","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32287003","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1569512666","https://openalex.org/W1966458987","https://openalex.org/W1985041785","https://openalex.org/W2039618894","https://openalex.org/W2052261418","https://openalex.org/W2067818819","https://openalex.org/W2069796695","https://openalex.org/W2081781433","https://openalex.org/W2099901798","https://openalex.org/W2126466006","https://openalex.org/W2135274825","https://openalex.org/W2150403567","https://openalex.org/W2172820226","https://openalex.org/W2565875728","https://openalex.org/W2766352633","https://openalex.org/W2896645289","https://openalex.org/W2902896987","https://openalex.org/W2908351833","https://openalex.org/W2915583118","https://openalex.org/W2949849645","https://openalex.org/W2952310764","https://openalex.org/W3022175766","https://openalex.org/W3085257274","https://openalex.org/W4230715464","https://openalex.org/W4244099834","https://openalex.org/W6685423195"],"related_works":["https://openalex.org/W4223896405","https://openalex.org/W2059629050","https://openalex.org/W2074740504","https://openalex.org/W3013644380","https://openalex.org/W1996935079","https://openalex.org/W3210243923","https://openalex.org/W2145833061","https://openalex.org/W2258998699","https://openalex.org/W4290380913","https://openalex.org/W1998405066"],"abstract_inverted_index":{"Estimating":[0],"phenotypic":[1,40,68,127,150,178],"features":[2,41,128,151,179],"(physical":[3],"and":[4,25,37,63,73,105,192],"biochemical":[5],"traits)":[6],"in":[7,22,54,58,109,114,173],"a":[8,84,122,181],"biological":[9,182],"organism":[10],"from":[11,198],"their":[12],"genomic":[13,34,142,199],"sequence":[14],"alone":[15],"and/or":[16],"environmental":[17,44],"conditions":[18,45],"has":[19],"major":[20],"applications":[21],"anthropological":[23],"paleontology":[24],"criminal":[26],"forensics,":[27],"for":[28],"example.":[29],"To":[30],"what":[31],"extent":[32],"do":[33],"sequences":[35],"generally":[36],"causally":[38,139],"determine":[39],"of":[42,50,76,83,91,116,125,176,180,190],"organisms,":[43],"aside?":[46],"We":[47],"present":[48],"results":[49,162],"two":[51,59],"studies,":[52],"one":[53],"blackfly":[55],"(Insecta:Diptera:Simuliidae)":[56],"larvae":[57],"species":[60],"(Simulium":[61],"ignescens":[62],"S.":[64],"tunja)":[65],"with":[66],"four":[67],"features,":[69],"including":[70],"the":[71,77,81,88,92,94,99,102,112,146,170,174,187],"area":[72],"spot":[74],"pattern":[75],"cephalic":[78],"apotome":[79],"(in":[80],"form":[82],"latin":[85],"cross":[86],"on":[87,101],"dorsal":[89],"side":[90],"head),":[93],"postgenal":[95],"cleft":[96],"(area":[97],"under":[98],"head":[100],"ventral":[103],"side)":[104],"general":[106],"body":[107],"color":[108],"larva":[110],"specimens;":[111],"second":[113],"strains":[115],"Arabidopsis":[117],"thaliana.":[118],"They":[119],"establish":[120],"that":[121,148,164],"substantial":[123],"component":[124],"these":[126,149],"(over":[129],"75":[130],"percent)":[131],"are":[132,152],"at":[133],"least":[134],"logically":[135],"inferable,":[136],"if":[137],"not":[138,153],"determined,":[140],"by":[141,158],"fragments":[143],"alone,":[144],"despite":[145],"fact":[147],"100":[154],"percent":[155],"determined":[156],"entirely":[157],"genetic":[159,171],"traits.":[160],"These":[161],"suggest":[163],"it":[165],"is":[166],"possible":[167],"to":[168,186,196],"infer":[169],"contribution":[172],"determination":[175],"specific":[177],"organism,":[183],"without":[184],"recourse":[185],"causal":[188],"chain":[189],"metabolomics":[191],"proteomic":[193],"events":[194],"leading":[195],"them":[197],"sequences.":[200]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
