{"id":"https://openalex.org/W3005809651","doi":"https://doi.org/10.1109/tcbb.2020.2973084","title":"Definition and Usage of Texture Feature for Biological Sequence","display_name":"Definition and Usage of Texture Feature for Biological Sequence","publication_year":2020,"publication_date":"2020-02-11","ids":{"openalex":"https://openalex.org/W3005809651","doi":"https://doi.org/10.1109/tcbb.2020.2973084","mag":"3005809651","pmid":"https://pubmed.ncbi.nlm.nih.gov/32070991"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2020.2973084","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.2973084","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014011487","display_name":"Weiyang Chen","orcid":"https://orcid.org/0000-0001-8430-7381"},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weiyang Chen","raw_affiliation_strings":["School of computer science and technology, Qilu University of Technology (Shandong Academy of Sciences), Jinan, Shandong, China","School of Computer Science and Technology, Qilu University of Technology (Shandong Academy of Sciences), Jinan, Shandong, China"],"raw_orcid":"https://orcid.org/0000-0001-8430-7381","affiliations":[{"raw_affiliation_string":"School of computer science and technology, Qilu University of Technology (Shandong Academy of Sciences), Jinan, Shandong, China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]},{"raw_affiliation_string":"School of Computer Science and Technology, Qilu University of Technology (Shandong Academy of Sciences), Jinan, Shandong, China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101957792","display_name":"Weiwei Li","orcid":"https://orcid.org/0000-0002-0414-3792"},"institutions":[{"id":"https://openalex.org/I152269853","display_name":"Qilu University of Technology","ror":"https://ror.org/04hyzq608","country_code":"CN","type":"education","lineage":["https://openalex.org/I152269853"]},{"id":"https://openalex.org/I4210142748","display_name":"Shandong Academy of Sciences","ror":"https://ror.org/04y8d6y55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210142748"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weiwei Li","raw_affiliation_strings":["School of computer science and technology, Qilu University of Technology (Shandong Academy of Sciences), Jinan, Shandong, China","School of Computer Science and Technology, Qilu University of Technology (Shandong Academy of Sciences), Jinan, Shandong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of computer science and technology, Qilu University of Technology (Shandong Academy of Sciences), Jinan, Shandong, China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]},{"raw_affiliation_string":"School of Computer Science and Technology, Qilu University of Technology (Shandong Academy of Sciences), Jinan, Shandong, China","institution_ids":["https://openalex.org/I152269853","https://openalex.org/I4210142748"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.3255,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.55033038,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"18","issue":"2","first_page":"773","last_page":"776"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6664855480194092},{"id":"https://openalex.org/keywords/texture","display_name":"Texture (cosmology)","score":0.6368585824966431},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5851706266403198},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5634281635284424},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5605867505073547},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.534794270992279},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5301260352134705},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4889620542526245},{"id":"https://openalex.org/keywords/image-texture","display_name":"Image texture","score":0.47119900584220886},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.46004724502563477},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.2753663957118988},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.2433106005191803},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.18232440948486328},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17276474833488464},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0910203754901886}],"concepts":[{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6664855480194092},{"id":"https://openalex.org/C2781195486","wikidata":"https://www.wikidata.org/wiki/Q289436","display_name":"Texture (cosmology)","level":3,"score":0.6368585824966431},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5851706266403198},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5634281635284424},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5605867505073547},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.534794270992279},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5301260352134705},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4889620542526245},{"id":"https://openalex.org/C63099799","wikidata":"https://www.wikidata.org/wiki/Q17147001","display_name":"Image texture","level":4,"score":0.47119900584220886},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.46004724502563477},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.2753663957118988},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.2433106005191803},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.18232440948486328},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17276474833488464},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0910203754901886},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2020.2973084","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.2973084","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32070991","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32070991","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2643111717","display_name":null,"funder_award_id":"ZR2017BF041","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G5938657414","display_name":null,"funder_award_id":"ZR2017BF041","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W45534775","https://openalex.org/W1800636980","https://openalex.org/W1971209198","https://openalex.org/W2021007752","https://openalex.org/W2044465660","https://openalex.org/W2055417485","https://openalex.org/W2079837759","https://openalex.org/W2105184687","https://openalex.org/W2117438495","https://openalex.org/W2120048439","https://openalex.org/W2125508887","https://openalex.org/W2127227873","https://openalex.org/W2145232949","https://openalex.org/W2166162901","https://openalex.org/W2172236671","https://openalex.org/W2333002605","https://openalex.org/W2602538792","https://openalex.org/W2809852815","https://openalex.org/W6638095514"],"related_works":["https://openalex.org/W4298130764","https://openalex.org/W2804364458","https://openalex.org/W2132641928","https://openalex.org/W4310225030","https://openalex.org/W2044270176","https://openalex.org/W2374828682","https://openalex.org/W2153116791","https://openalex.org/W2388733570","https://openalex.org/W4230530180","https://openalex.org/W1980033651"],"abstract_inverted_index":{"In":[0],"recent":[1],"years,":[2],"sequencing":[3],"technology":[4],"has":[5],"developed":[6],"rapidly.":[7],"This":[8,143,170,180],"produces":[9],"a":[10,33,172,184],"large":[11],"number":[12],"of":[13,18,35,46,64,66,74,81,88,97,127,139,175,187,192],"biological":[14,27,47,75,82,98,151,155,176,193],"sequence":[15,83,99,111,177,194],"data.":[16],"Because":[17],"its":[19],"importance,":[20],"there":[21,30],"have":[22],"been":[23],"many":[24],"studies":[25],"on":[26,136],"sequences.":[28,48],"However,":[29],"is":[31,50,56,171],"still":[32],"lack":[34],"an":[36,51],"effective":[37],"quantitative":[38,188],"method":[39,87,108,144],"for":[40],"defining":[41],"and":[42,100,114,130,153,161,189],"calculating":[43],"texture":[44,72,90,95,162,178],"features":[45,73,96,112,163],"Texture":[49],"important":[52],"visual":[53],"feature.":[54],"It":[55],"generally":[57],"used":[58],"to":[59,109,148],"describe":[60],"the":[61,71,78,85,94,102,123,132,137,140],"spatial":[62],"arrangement":[63],"intensities":[65],"images.":[67],"Here":[68],"we":[69,92,120],"defined":[70,93],"sequence.":[76],"Combining":[77],"digital":[79],"coding":[80],"with":[84],"calculation":[86,103,191],"image":[89],"features,":[91,119],"designed":[101],"method.":[104,169],"We":[105],"applied":[106,147],"this":[107,168],"DNA":[110,128],"quantification":[113],"analysis.":[115],"Using":[116],"these":[117],"quantified":[118,141],"can":[121,145,157,164],"compute":[122],"similarity":[124],"distance":[125],"matrix":[126],"sequences":[129,156],"construct":[131],"phylogenetic":[133],"relationships":[134],"based":[135],"clustering":[138],"features.":[142,179,195],"be":[146,158,165],"analyze":[149],"any":[150],"sequence,":[152],"all":[154],"digitally":[159],"coded":[160],"calculated":[166],"by":[167],"novel":[173],"study":[174],"will":[181],"usher":[182],"in":[183],"new":[185],"era":[186],"mathematical":[190]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
