{"id":"https://openalex.org/W3003053789","doi":"https://doi.org/10.1109/tcbb.2020.2968882","title":"A Deep Learning Framework for Gene Ontology Annotations With Sequence- and Network-Based Information","display_name":"A Deep Learning Framework for Gene Ontology Annotations With Sequence- and Network-Based Information","publication_year":2020,"publication_date":"2020-01-23","ids":{"openalex":"https://openalex.org/W3003053789","doi":"https://doi.org/10.1109/tcbb.2020.2968882","mag":"3003053789","pmid":"https://pubmed.ncbi.nlm.nih.gov/31985440"},"language":"en","primary_location":{"id":"doi:10.1109/tcbb.2020.2968882","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.2968882","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032947862","display_name":"Fuhao Zhang","orcid":"https://orcid.org/0000-0002-5339-0714"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fuhao Zhang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, Hunan, P. R. China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan, P. R. China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045276990","display_name":"Hong Song","orcid":"https://orcid.org/0000-0003-3997-6468"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hong Song","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, Hunan, P. R. China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan, P. R. China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033885404","display_name":"Min Zeng","orcid":"https://orcid.org/0000-0002-1726-0955"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Zeng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, Hunan, P. R. China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan, P. R. China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["Division of Biomedical Engineering and Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK, Canada"],"affiliations":[{"raw_affiliation_string":"Division of Biomedical Engineering and Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079316675","display_name":"Yaohang Li","orcid":"https://orcid.org/0000-0003-0178-1876"},"institutions":[{"id":"https://openalex.org/I81365321","display_name":"Old Dominion University","ror":"https://ror.org/04zjtrb98","country_code":"US","type":"education","lineage":["https://openalex.org/I81365321"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yaohang Li","raw_affiliation_strings":["Department of Computer Science, Old Dominion University, Norfolk, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Old Dominion University, Norfolk, VA, USA","institution_ids":["https://openalex.org/I81365321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101465265","display_name":"Yi Pan","orcid":"https://orcid.org/0000-0002-2766-3096"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi Pan","raw_affiliation_strings":["Department of Computer Science, Georgia State University, Atlanta, GA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Georgia State University, Atlanta, GA, USA","institution_ids":["https://openalex.org/I181565077"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, Hunan, P. R. China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan, P. R. China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5032947862"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":null,"apc_paid":null,"fwci":2.2571,"has_fulltext":false,"cited_by_count":50,"citation_normalized_percentile":{"value":0.88604831,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"18","issue":"6","first_page":"2208","last_page":"2217"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6990949511528015},{"id":"https://openalex.org/keywords/subsequence","display_name":"Subsequence","score":0.6628778576850891},{"id":"https://openalex.org/keywords/word2vec","display_name":"Word2vec","score":0.6082975268363953},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5879983305931091},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.5541481375694275},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.527000367641449},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5242602825164795},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5184051990509033},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.46982669830322266},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39652565121650696},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.37912803888320923},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3586028814315796},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2704582214355469},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18207231163978577},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.16706278920173645},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.16482391953468323},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1050061583518982},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08682301640510559}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6990949511528015},{"id":"https://openalex.org/C137877099","wikidata":"https://www.wikidata.org/wiki/Q1332977","display_name":"Subsequence","level":3,"score":0.6628778576850891},{"id":"https://openalex.org/C2776461190","wikidata":"https://www.wikidata.org/wiki/Q22673982","display_name":"Word2vec","level":3,"score":0.6082975268363953},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5879983305931091},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.5541481375694275},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.527000367641449},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5242602825164795},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5184051990509033},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.46982669830322266},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39652565121650696},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.37912803888320923},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3586028814315796},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2704582214355469},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18207231163978577},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.16706278920173645},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.16482391953468323},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1050061583518982},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08682301640510559},{"id":"https://openalex.org/C34388435","wikidata":"https://www.wikidata.org/wiki/Q2267362","display_name":"Bounded function","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcbb.2020.2968882","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcbb.2020.2968882","pdf_url":null,"source":{"id":"https://openalex.org/S36029991","display_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","issn_l":"1545-5963","issn":["1545-5963","1557-9964","2374-0043"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM Transactions on Computational Biology and Bioinformatics","raw_type":"journal-article"},{"id":"pmid:31985440","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31985440","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE/ACM transactions on computational biology and bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1527238211","display_name":null,"funder_award_id":"2018WK4001","funder_id":"https://openalex.org/F4320321471","funder_display_name":"Hunan Provincial Science and Technology Department"},{"id":"https://openalex.org/G3328780670","display_name":null,"funder_award_id":"61728211","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4043378463","display_name":null,"funder_award_id":"61832019","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8210156615","display_name":null,"funder_award_id":"61622213","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8215791582","display_name":null,"funder_award_id":"G20190018001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321471","display_name":"Hunan Provincial Science and Technology Department","ror":"https://ror.org/04qgr7x96"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W1500518213","https://openalex.org/W1533329293","https://openalex.org/W1663797894","https://openalex.org/W1832693441","https://openalex.org/W1888005072","https://openalex.org/W1976463269","https://openalex.org/W1988841006","https://openalex.org/W1998490996","https://openalex.org/W2004251312","https://openalex.org/W2079735306","https://openalex.org/W2096173332","https://openalex.org/W2103017472","https://openalex.org/W2117486996","https://openalex.org/W2118957335","https://openalex.org/W2129448726","https://openalex.org/W2151946481","https://openalex.org/W2152825437","https://openalex.org/W2153544371","https://openalex.org/W2154851992","https://openalex.org/W2164461702","https://openalex.org/W2166468869","https://openalex.org/W2168118433","https://openalex.org/W2172574008","https://openalex.org/W2223752691","https://openalex.org/W2319227129","https://openalex.org/W2387462954","https://openalex.org/W2472351724","https://openalex.org/W2511002675","https://openalex.org/W2514044079","https://openalex.org/W2522417827","https://openalex.org/W2586452838","https://openalex.org/W2595947069","https://openalex.org/W2611792444","https://openalex.org/W2615066396","https://openalex.org/W2622849676","https://openalex.org/W2750770743","https://openalex.org/W2778113763","https://openalex.org/W2793303269","https://openalex.org/W2803920401","https://openalex.org/W2911960890","https://openalex.org/W2912802963","https://openalex.org/W2935275081","https://openalex.org/W2946834067","https://openalex.org/W2951282333","https://openalex.org/W2951422523","https://openalex.org/W2951731136","https://openalex.org/W2962756421","https://openalex.org/W2963502130","https://openalex.org/W2964350391","https://openalex.org/W2971405760","https://openalex.org/W3104097132","https://openalex.org/W4236236547","https://openalex.org/W4248637428","https://openalex.org/W4254816979","https://openalex.org/W4294170691","https://openalex.org/W4298082496","https://openalex.org/W6682691769","https://openalex.org/W6694260854"],"related_works":["https://openalex.org/W2809728348","https://openalex.org/W3132344302","https://openalex.org/W2100936651","https://openalex.org/W2373976973","https://openalex.org/W2534353930","https://openalex.org/W2159663778","https://openalex.org/W2889660853","https://openalex.org/W2374032786","https://openalex.org/W1958717431","https://openalex.org/W2995540154"],"abstract_inverted_index":{"Knowledge":[0],"of":[1,16,22,33,52,55,100,143,193,199,212],"protein":[2,39,65,83,86,94,116,144,155,206],"functions":[3,43,46,66,84],"plays":[4],"an":[5],"important":[6],"role":[7],"in":[8],"biology":[9],"and":[10,44,67,88,105,118,123,128,139,164,218,230],"medicine.":[11],"With":[12],"the":[13,110,137,150,167,180,183,196,210],"rapid":[14],"development":[15],"high-throughput":[17],"technologies,":[18],"a":[19,30,53,61,75,120,172],"huge":[20],"number":[21,32],"proteins":[23,34],"have":[24],"been":[25],"discovered.":[26],"However,":[27],"there":[28],"are":[29,201,220],"great":[31],"without":[35],"functional":[36],"annotations.":[37],"A":[38],"usually":[40],"has":[41],"multiple":[42],"some":[45],"or":[47],"biological":[48],"processes":[49],"require":[50],"interactions":[51],"plurality":[54],"proteins.":[56],"Additionally,":[57,147],"Gene":[58],"Ontology":[59],"provides":[60],"useful":[62],"classification":[63],"for":[64,157],"contains":[68],"more":[69],"than":[70],"40,000":[71],"terms.":[72],"We":[73,108],"propose":[74],"deep":[76],"learning":[77],"framework":[78],"called":[79],"DeepGOA":[80,227],"to":[81,113,135,153,175,188,204],"predict":[82,205],"with":[85],"sequences":[87,156],"protein-protein":[89],"interaction":[90],"(PPI)":[91],"networks.":[92],"For":[93,179],"sequences,":[95,117,145],"we":[96,148],"extract":[97],"two":[98,197],"types":[99,198],"information:":[101],"sequence":[102],"semantic":[103,141],"information":[104,168,192],"subsequence-based":[106,159],"features.":[107,178],"use":[109,149],"word2vec":[111],"technique":[112],"numerically":[114],"represent":[115],"utilize":[119],"Bi-directional":[121],"Long":[122],"Short":[124],"Time":[125],"Memory":[126],"(Bi-LSTM)":[127],"multi-scale":[129],"convolutional":[130],"neural":[131,173],"network":[132,174],"(multi-scale":[133],"CNN)":[134],"obtain":[136],"global":[138],"local":[140],"features":[142,200],"respectively.":[146],"InterPro":[151],"tool":[152],"scan":[154],"extracting":[158],"information,":[160],"such":[161],"as":[162],"domains":[163],"motifs.":[165],"Then,":[166],"is":[169,186],"plugged":[170],"into":[171],"generate":[176,189],"high-quality":[177],"PPI":[181],"network,":[182],"Deepwalk":[184],"algorithm":[185],"applied":[187],"its":[190],"embedding":[191],"PPI.":[194],"Then":[195],"concatenated":[202],"together":[203],"functions.":[207],"To":[208],"evaluate":[209],"performance":[211],"DeepGOA,":[213],"several":[214],"different":[215],"evaluation":[216],"methods":[217],"metrics":[219],"utilized.":[221],"The":[222],"experimental":[223],"results":[224],"show":[225],"that":[226],"outperforms":[228],"DeepGO":[229],"BLAST.":[231]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
